Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:01:00 (1737646): wrapper (7.7.26015): starting
05:01:00 (1737646): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:01:00] Arguments: --nthreads 8
[2025-06-05 05:01:00] Threads: 8
[2025-06-05 05:01:00] Checking for CVMFS
[2025-06-05 05:01:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:01:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:01:01] 2.12.6.0 2000804 24486 498572 146812 2 348 24842774 32935937 18267 16776704 0 132920765 99.700 103095154 24599 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 05:01:01] CVMFS is ok
[2025-06-05 05:01:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:01:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:01:01] Further information can be found at the LHC@home message board.
[2025-06-05 05:01:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:01:01] Checking for apptainer binary...
[2025-06-05 05:01:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:01:01] Running /usr/bin/apptainer --version
[2025-06-05 05:01:01] apptainer version 1.4.1-1.el9
[2025-06-05 05:01:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:01:01] c6-12-27-3.aglt2.org
[2025-06-05 05:01:01] apptainer works
[2025-06-05 05:01:01] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:01:01] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:01:01] Starting ATLAS job with PandaID=6668443413
[2025-06-05 05:01:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:49:52 (1932924): wrapper (7.7.26015): starting
05:49:52 (1932924): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:49:52] Arguments: --nthreads 8
[2025-06-05 05:49:52] Threads: 8
[2025-06-05 05:49:52] This job has been restarted, cleaning up previous attempt
[2025-06-05 05:49:52] Checking for CVMFS
[2025-06-05 05:49:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:49:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:49:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:49:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:49:52] 2.12.6.0 2000804 24535 510384 146814 2 679 25027499 32935936 15863 16776704 0 133137611 99.701 103165293 24603 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 05:49:52] CVMFS is ok
[2025-06-05 05:49:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:49:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:49:52] Further information can be found at the LHC@home message board.
[2025-06-05 05:49:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:49:52] Checking for apptainer binary...
[2025-06-05 05:49:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:49:52] Running /usr/bin/apptainer --version
[2025-06-05 05:49:52] apptainer version 1.4.1-1.el9
[2025-06-05 05:49:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:49:52] c6-12-27-3.aglt2.org
[2025-06-05 05:49:52] apptainer works
[2025-06-05 05:49:52] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:49:52] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:49:52] Starting ATLAS job with PandaID=6668443413
[2025-06-05 05:49:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:21:49]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:21:49] 2025-06-05 13:21:34,559 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668443413/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,559 | INFO     | extracted standard info from prmon json
[2025-06-05 09:21:49] 2025-06-05 13:21:34,560 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 09:21:49] 2025-06-05 13:21:34,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:21:49] 2025-06-05 13:21:34,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:21:49] 2025-06-05 13:21:34,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:21:49] 2025-06-05 13:21:34,564 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:21:49] 2025-06-05 13:21:34,565 | INFO     | sum of square deviations: 2790280313.057704
[2025-06-05 09:21:49] 2025-06-05 13:21:34,566 | INFO     | sum of deviations: 25812205230.79809
[2025-06-05 09:21:49] 2025-06-05 13:21:34,566 | INFO     | mean x: 1749123342.5673077
[2025-06-05 09:21:49] 2025-06-05 13:21:34,567 | INFO     | mean y: 2114726.764423077
[2025-06-05 09:21:49] 2025-06-05 13:21:34,567 | INFO     | -- intersect: -16178600336.53725
[2025-06-05 09:21:49] 2025-06-05 13:21:34,567 | INFO     | intersect: -16178600336.53725
[2025-06-05 09:21:49] 2025-06-05 13:21:34,567 | INFO     | chi2: 2.349966219922546
[2025-06-05 09:21:49] 2025-06-05 13:21:34,568 | INFO     | sum of square deviations: 2593852993.0344825
[2025-06-05 09:21:49] 2025-06-05 13:21:34,569 | INFO     | sum of deviations: 39973510006.000015
[2025-06-05 09:21:49] 2025-06-05 13:21:34,569 | INFO     | mean x: 1749123190.0689654
[2025-06-05 09:21:49] 2025-06-05 13:21:34,569 | INFO     | mean y: 2125555.1428571427
[2025-06-05 09:21:49] 2025-06-05 13:21:34,569 | INFO     | -- intersect: -26953370198.74429
[2025-06-05 09:21:49] 2025-06-05 13:21:34,569 | INFO     | intersect: -26953370198.74429
[2025-06-05 09:21:49] 2025-06-05 13:21:34,570 | INFO     | chi2: 1.657072038817505
[2025-06-05 09:21:49] 2025-06-05 13:21:34,570 | INFO     | current chi2=1.657072038817505 (change=29.485282606652895 %)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,570 | INFO     | sum of square deviations: 2406867710.510089
[2025-06-05 09:21:49] 2025-06-05 13:21:34,571 | INFO     | sum of deviations: 38938513039.944435
[2025-06-05 09:21:49] 2025-06-05 13:21:34,571 | INFO     | mean x: 1749123037.570707
[2025-06-05 09:21:49] 2025-06-05 13:21:34,571 | INFO     | mean y: 2124700.611111111
[2025-06-05 09:21:49] 2025-06-05 13:21:34,572 | INFO     | -- intersect: -28295338391.98236
[2025-06-05 09:21:49] 2025-06-05 13:21:34,572 | INFO     | intersect: -28295338391.98236
[2025-06-05 09:21:49] 2025-06-05 13:21:34,572 | INFO     | chi2: 1.6560734288102767
[2025-06-05 09:21:49] 2025-06-05 13:21:34,572 | INFO     | current chi2=1.6560734288102767 (change=0.060263524085588514 %)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,572 | INFO     | right removable region: 197
[2025-06-05 09:21:49] 2025-06-05 13:21:34,573 | INFO     | sum of square deviations: 2593844453.0344825
[2025-06-05 09:21:49] 2025-06-05 13:21:34,574 | INFO     | sum of deviations: -5265159029.379313
[2025-06-05 09:21:49] 2025-06-05 13:21:34,574 | INFO     | mean x: 1749123495.0689654
[2025-06-05 09:21:49] 2025-06-05 13:21:34,574 | INFO     | mean y: 2138657.8128078817
[2025-06-05 09:21:49] 2025-06-05 13:21:34,574 | INFO     | -- intersect: 3552626564.976236
[2025-06-05 09:21:49] 2025-06-05 13:21:34,574 | INFO     | intersect: 3552626564.976236
[2025-06-05 09:21:49] 2025-06-05 13:21:34,575 | INFO     | chi2: 0.8129456579115983
[2025-06-05 09:21:49] 2025-06-05 13:21:34,575 | INFO     | current chi2=0.8129456579115983 (change=65.40607047796658 %)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,575 | INFO     | sum of square deviations: 2406875028.7727256
[2025-06-05 09:21:49] 2025-06-05 13:21:34,576 | INFO     | sum of deviations: -6304382459.484848
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | mean x: 1749123647.560606
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | mean y: 2139473.0404040404
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | -- intersect: 4583658792.210882
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | intersect: 4583658792.210882
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | chi2: 0.7985229424712642
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | current chi2=0.7985229424712642 (change=1.7741303246990827 %)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,577 | INFO     | left removable region: 20
[2025-06-05 09:21:49] 2025-06-05 13:21:34,578 | INFO     | sum of square deviations: 1719413596.542375
[2025-06-05 09:21:49] 2025-06-05 13:21:34,579 | INFO     | sum of deviations: 11929251251.169504
[2025-06-05 09:21:49] 2025-06-05 13:21:34,579 | INFO     | mean x: 1749123617.0508475
[2025-06-05 09:21:49] 2025-06-05 13:21:34,579 | INFO     | mean y: 2146641.8700564974
[2025-06-05 09:21:49] 2025-06-05 13:21:34,579 | INFO     | -- intersect: -12133232035.554352
[2025-06-05 09:21:49] 2025-06-05 13:21:34,579 | INFO     | intersect: -12133232035.554352
[2025-06-05 09:21:49] 2025-06-05 13:21:34,580 | INFO     | chi2: 0.06619020792071088
[2025-06-05 09:21:49] 2025-06-05 13:21:34,580 | INFO     | -- intersect: -12133232035.554352
[2025-06-05 09:21:49] 2025-06-05 13:21:34,580 | INFO     | current memory leak: 6.94 B/s (using 177 data points, chi2=0.07)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,580 | INFO     | ..............................
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . Timing measurements:
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . get job = 0 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . initial setup = 1 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . payload setup = 6 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . stage-in = 0 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . payload execution = 12654 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . stage-out = 2 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | . log creation = 0 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,581 | INFO     | ..............................
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | 
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | job summary report
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | --------------------------------------------------
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | PanDA job id: 6668443413
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | task id: 44871837
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | errors: (none)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:21:49] 2025-06-05 13:21:34,954 | INFO     | pilot state: finished 
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | transexitcode: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | exeerrorcode: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | exeerrordiag: 
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | exitcode: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | exitmsg: OK
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | cpuconsumptiontime: 58054 s
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | nevents: 400
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | neventsw: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | pid: 1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | pgrp: 1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | corecount: 8
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | event service: False
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 12665: 2427471, 12668: 2436412, 12671: 2436596, 12678: 2436766}
[2025-06-05 09:21:49] 2025-06-05 13:21:34,955 | INFO     | --------------------------------------------------
[2025-06-05 09:21:49] 2025-06-05 13:21:34,956 | INFO     | 
[2025-06-05 09:21:49] 2025-06-05 13:21:34,956 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 09:21:49] 2025-06-05 13:21:34,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | job 6668443413 has completed (purged errors)
[2025-06-05 09:21:49] 2025-06-05 13:21:34,980 | INFO     | overall cleanup function is called
[2025-06-05 09:21:49] 2025-06-05 13:21:35,988 | INFO     | --- collectZombieJob: --- 10, [1965655]
[2025-06-05 09:21:49] 2025-06-05 13:21:35,988 | INFO     | zombie collector waiting for pid 1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:35,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:21:49] 2025-06-05 13:21:35,988 | INFO     | collected zombie processes
[2025-06-05 09:21:49] 2025-06-05 13:21:35,988 | INFO     | will attempt to kill all subprocesses of pid=1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:36,352 | INFO     | process IDs to be killed: [1965655] (in reverse order)
[2025-06-05 09:21:49] 2025-06-05 13:21:36,462 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:21:49] 2025-06-05 13:21:36,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:21:49] 2025-06-05 13:21:36,477 | INFO     | did not find any defunct processes belonging to 1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:36,492 | INFO     | did not find any defunct processes belonging to 1965655
[2025-06-05 09:21:49] 2025-06-05 13:21:36,493 | INFO     | ready for new job
[2025-06-05 09:21:49] 2025-06-05 13:21:36,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:21:49] 2025-06-05 13:21:36,495 | INFO     | **************************************
[2025-06-05 09:21:49] 2025-06-05 13:21:36,495 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:21:49] 2025-06-05 13:21:36,495 | INFO     | **************************************
[2025-06-05 09:21:49] 2025-06-05 13:21:36,495 | INFO     | 
[2025-06-05 09:21:49] 2025-06-05 13:21:36,515 | INFO     | architecture information:
[2025-06-05 09:21:49] 2025-06-05 13:21:36,515 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:21:49] 2025-06-05 13:21:36,531 | INFO     | cat /etc/os-release:
[2025-06-05 09:21:49] NAME="CentOS Linux"
[2025-06-05 09:21:49] VERSION="7 (Core)"
[2025-06-05 09:21:49] ID="centos"
[2025-06-05 09:21:49] ID_LIKE="rhel fedora"
[2025-06-05 09:21:49] VERSION_ID="7"
[2025-06-05 09:21:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:21:49] ANSI_COLOR="0;31"
[2025-06-05 09:21:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:21:49] HOME_URL="https://www.centos.org/"
[2025-06-05 09:21:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:21:49] 
[2025-06-05 09:21:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:21:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:21:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:21:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:21:49] 
[2025-06-05 09:21:49] 2025-06-05 13:21:36,532 | INFO     | **************************************
[2025-06-05 09:21:49] 2025-06-05 13:21:37,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 09:21:49] 2025-06-05 13:21:37,054 | INFO     | sufficient remaining disk space (95515836416 B)
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | INFO     | update_server=False
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:21:49] 2025-06-05 13:21:37,055 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:21:49] 2025-06-05 13:21:37,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:21:49] 2025-06-05 13:21:37,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:21:49] 2025-06-05 13:21:37,305 | INFO     | all payload control threads have been joined
[2025-06-05 09:21:49] 2025-06-05 13:21:37,520 | INFO     | all data control threads have been joined
[2025-06-05 09:21:49] 2025-06-05 13:21:37,617 | INFO     | all job control threads have been joined
[2025-06-05 09:21:49] 2025-06-05 13:21:37,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:21:49] 2025-06-05 13:21:37,675 | INFO     | aborting loop
[2025-06-05 09:21:49] 2025-06-05 13:21:37,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:21:49] 2025-06-05 13:21:38,061 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,249 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,311 | INFO     | [payload] control thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,352 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,525 | INFO     | [data] control thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:21:49] 2025-06-05 13:21:38,622 | INFO     | [job] control thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,681 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,731 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,884 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:38,980 | INFO     | [job] validate thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:39,020 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:39,403 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:39,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:21:49] 2025-06-05 13:21:39,925 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:40,703 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:42,569 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:21:49] 2025-06-05 13:21:43,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640947963712)>', '<ExcThread(monitor, started 140640096605952)>']
[2025-06-05 09:21:49] 2025-06-05 13:21:44,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:21:49] 2025-06-05 13:21:44,095 | INFO     | [monitor] control thread has ended
[2025-06-05 09:21:49] 2025-06-05 13:21:48,710 | INFO     | all workflow threads have been joined
[2025-06-05 09:21:49] 2025-06-05 13:21:48,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:21:49] 2025-06-05 13:21:48,710 | INFO     | traces error code: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:48,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:21:49] 2025-06-05 13:21:48,868 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:21:49] 2025-06-05 13:21:48,871 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:21:49] 2025-06-05 13:21:48,875 [wrapper] pilotpid: 1944775
[2025-06-05 09:21:49] 2025-06-05 13:21:48,878 [wrapper] Pilot exit status: 0
[2025-06-05 09:21:49] 2025-06-05 13:21:48,889 [wrapper] pandaids: 6668443413 6668443413
[2025-06-05 09:21:49] 2025-06-05 13:21:48,968 [wrapper] cleanup supervisor_pilot 2538543 1944777
[2025-06-05 09:21:49] 2025-06-05 13:21:48,971 [wrapper] Test setup, not cleaning
[2025-06-05 09:21:49] 2025-06-05 13:21:48,974 [wrapper] apfmon messages muted
[2025-06-05 09:21:49] 2025-06-05 13:21:48,977 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:21:49] 2025-06-05 13:21:48,980 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:21:49]  *** Error codes and diagnostics ***
[2025-06-05 09:21:49]     "exeErrorCode": 0,
[2025-06-05 09:21:49]     "exeErrorDiag": "",
[2025-06-05 09:21:49]     "pilotErrorCode": 0,
[2025-06-05 09:21:49]     "pilotErrorDiag": "",
[2025-06-05 09:21:49]  *** Listing of results directory ***
[2025-06-05 09:21:49] total 646736
[2025-06-05 09:21:49] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas    495897 May 28 09:01 pilot3.tar.gz
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas      5111 May 28 09:13 queuedata.json
[2025-06-05 09:21:49] -rwx------. 1 boincer umatlas     37140 May 28 09:14 runpilot2-wrapper.sh
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas       100 Jun  5 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:21:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 05:01 run_atlas
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas       105 Jun  5 05:01 job.xml
[2025-06-05 09:21:49] -rw-r--r--. 3 boincer umatlas 227607027 Jun  5 05:01 EVNT.44871834._003307.pool.root.1
[2025-06-05 09:21:49] -rw-r--r--. 3 boincer umatlas 227607027 Jun  5 05:01 ATLAS.root_0
[2025-06-05 09:21:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 05:01 start_atlas.sh
[2025-06-05 09:21:49] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 05:01 shared
[2025-06-05 09:21:49] -rw-r--r--. 2 boincer umatlas    508882 Jun  5 05:01 input.tar.gz
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas         0 Jun  5 05:01 boinc_lockfile
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 05:49 pandaJob.out
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas    983289 Jun  5 05:50 agis_schedconf.cvmfs.json
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas 200294955 Jun  5 09:20 HITS.44871837._084756.pool.root.1
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas       530 Jun  5 09:20 boinc_task_state.xml
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas        96 Jun  5 09:20 pilot_heartbeat.json
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas      6860 Jun  5 09:20 init_data.xml
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas      1042 Jun  5 09:21 memory_monitor_summary.json
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas   1598969 Jun  5 09:21 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas        28 Jun  5 09:21 wrapper_checkpoint.txt
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas    376663 Jun  5 09:21 log.44871837._084756.job.log.tgz.1
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 09:21 boinc_mmap_file
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas      7730 Jun  5 09:21 heartbeat.json
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas      4476 Jun  5 09:21 pilotlog.txt
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas   1076600 Jun  5 09:21 log.44871837._084756.job.log.1
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas       357 Jun  5 09:21 output.list
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas       620 Jun  5 09:21 runtime_log
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas   1474560 Jun  5 09:21 result.tar.gz
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas      8755 Jun  5 09:21 runtime_log.err
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas       784 Jun  5 09:21 7NsNDmjmVe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoXTKDmeFtwOo.diag
[2025-06-05 09:21:49] -rw-r--r--. 1 boincer umatlas     23129 Jun  5 09:21 stderr.txt
[2025-06-05 09:21:49] HITS file was successfully produced:
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas 200294955 Jun  5 09:20 shared/HITS.pool.root.1
[2025-06-05 09:21:49]  *** Contents of shared directory: ***
[2025-06-05 09:21:49] total 419844
[2025-06-05 09:21:49] -rw-r--r--. 3 boincer umatlas 227607027 Jun  5 05:01 ATLAS.root_0
[2025-06-05 09:21:49] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 05:01 start_atlas.sh
[2025-06-05 09:21:49] -rw-r--r--. 2 boincer umatlas    508882 Jun  5 05:01 input.tar.gz
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas 200294955 Jun  5 09:20 HITS.pool.root.1
[2025-06-05 09:21:49] -rw-------. 1 boincer umatlas   1474560 Jun  5 09:21 result.tar.gz
09:21:50 (1932924): run_atlas exited; CPU time 58536.867284
09:21:50 (1932924): called boinc_finish(0)

</stderr_txt>
]]>

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