Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:48:02 (1949244): wrapper (7.7.26015): starting
04:48:02 (1949244): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 04:48:02] Arguments: --nthreads 12
[2025-06-05 04:48:02] Threads: 12
[2025-06-05 04:48:02] Checking for CVMFS
[2025-06-05 04:48:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:48:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:48:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:48:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:48:02] 2.12.6.0 40552 2017 178052 146812 1 725 31889201 32935937 11144 16776704 0 3912366 99.131 9976603 41623 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 04:48:02] CVMFS is ok
[2025-06-05 04:48:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:48:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:48:02] Further information can be found at the LHC@home message board.
[2025-06-05 04:48:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:48:02] Checking for apptainer binary...
[2025-06-05 04:48:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:48:02] Running /usr/bin/apptainer --version
[2025-06-05 04:48:02] apptainer version 1.4.1-1.el9
[2025-06-05 04:48:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:48:02] c6-1-26-4.aglt2.org
[2025-06-05 04:48:02] apptainer works
[2025-06-05 04:48:02] Set ATHENA_PROC_NUMBER=12
[2025-06-05 04:48:02] Set ATHENA_CORE_NUMBER=12
[2025-06-05 04:48:02] Starting ATLAS job with PandaID=6667885809
[2025-06-05 04:48:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:37:34]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:37:34] 2025-06-05 10:37:14,700 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:37:34] 2025-06-05 10:37:14,705 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:37:34] 2025-06-05 10:37:14,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:37:34] 2025-06-05 10:37:14,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:37:34] 2025-06-05 10:37:14,710 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:37:34] 2025-06-05 10:37:14,711 | INFO     | sum of square deviations: 379845911.06542003
[2025-06-05 06:37:34] 2025-06-05 10:37:14,711 | INFO     | sum of deviations: -8294579450.448592
[2025-06-05 06:37:34] 2025-06-05 10:37:14,711 | INFO     | mean x: 1749116555.093458
[2025-06-05 06:37:34] 2025-06-05 10:37:14,712 | INFO     | mean y: 2395168.644859813
[2025-06-05 06:37:34] 2025-06-05 10:37:14,712 | INFO     | -- intersect: 38197320562.53416
[2025-06-05 06:37:34] 2025-06-05 10:37:14,712 | INFO     | intersect: 38197320562.53416
[2025-06-05 06:37:34] 2025-06-05 10:37:14,713 | INFO     | chi2: 1.902673462253622
[2025-06-05 06:37:34] 2025-06-05 10:37:14,713 | INFO     | sum of square deviations: 329041480.7058816
[2025-06-05 06:37:34] 2025-06-05 10:37:14,713 | INFO     | sum of deviations: -6607602737.117647
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | mean x: 1749116402.5882354
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | mean y: 2400112.7352941176
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | -- intersect: 35127048544.55475
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | intersect: 35127048544.55475
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | chi2: 1.8924619657752737
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | current chi2=1.8924619657752737 (change=0.5366920115789807 %)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | right removable region: 101
[2025-06-05 06:37:34] 2025-06-05 10:37:14,714 | INFO     | sum of square deviations: 329041908.51960725
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | sum of deviations: -24805423036.058834
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | mean x: 1749116707.5980392
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | mean y: 2443858.705882353
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | -- intersect: 131862789753.89256
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | intersect: 131862789753.89256
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | chi2: 0.2815777002686073
[2025-06-05 06:37:34] 2025-06-05 10:37:14,715 | INFO     | current chi2=0.2815777002686073 (change=85.20094457326942 %)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | sum of square deviations: 282982180.96907264
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | sum of deviations: -20744355405.41237
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | mean x: 1749116860.1030927
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | mean y: 2430346.0412371135
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | -- intersect: 128223584297.57942
[2025-06-05 06:37:34] 2025-06-05 10:37:14,716 | INFO     | intersect: 128223584297.57942
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | chi2: 0.27813695558915674
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | current chi2=0.27813695558915674 (change=1.221952120557947 %)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | left removable region: 20
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | sum of square deviations: 164765643.99999985
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | sum of deviations: -8413025258.333332
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | mean x: 1749116982.1111112
[2025-06-05 06:37:34] 2025-06-05 10:37:14,717 | INFO     | mean y: 2394094.1481481483
[2025-06-05 06:37:34] 2025-06-05 10:37:14,718 | INFO     | -- intersect: 89313278287.21793
[2025-06-05 06:37:34] 2025-06-05 10:37:14,718 | INFO     | intersect: 89313278287.21793
[2025-06-05 06:37:34] 2025-06-05 10:37:14,718 | INFO     | chi2: 0.19305859156271796
[2025-06-05 06:37:34] 2025-06-05 10:37:14,718 | INFO     | -- intersect: 89313278287.21793
[2025-06-05 06:37:34] 2025-06-05 10:37:14,718 | INFO     | current memory leak: -51.06 B/s (using 81 data points, chi2=0.19)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | ..............................
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . Timing measurements:
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . get job = 0 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . initial setup = 2 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . payload setup = 7 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . stage-in = 0 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . payload execution = 6508 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,719 | INFO     | . stage-out = 0 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,720 | INFO     | . log creation = 0 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,720 | INFO     | ..............................
[2025-06-05 06:37:34] 2025-06-05 10:37:14,721 | INFO     | sufficient remaining disk space (75860279296 B)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,741 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,778 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6667885809: 4430777 B (within 2537553920 B limit)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,779 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6667885809/HITS.44871837._077544.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,789 | INFO     | total size of present files: 0 B (workdir size: 4430777 B)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,795 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6667885809/HITS.44871837._077544.pool.root.1 since it does not exist
[2025-06-05 06:37:34] 2025-06-05 10:37:14,937 | INFO     | 
[2025-06-05 06:37:34] 2025-06-05 10:37:14,937 | INFO     | job summary report
[2025-06-05 06:37:34] 2025-06-05 10:37:14,937 | INFO     | --------------------------------------------------
[2025-06-05 06:37:34] 2025-06-05 10:37:14,937 | INFO     | PanDA job id: 6667885809
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | task id: 44871837
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | errors: (none)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | pilot state: finished 
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | transexitcode: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | exeerrorcode: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:14,938 | INFO     | exeerrordiag: 
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | exitcode: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | exitmsg: OK
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | cpuconsumptiontime: 50028 s
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | nevents: 400
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | neventsw: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | pid: 1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:14,939 | INFO     | pgrp: 1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | corecount: 12
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | event service: False
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | sizes: {0: 2397170, 1: 2397369, 5: 2397575, 12: 2397631, 6519: 2424476, 6520: 2424475, 6521: 2433600, 6522: 2433656, 6526: 2433854}
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | --------------------------------------------------
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | 
[2025-06-05 06:37:34] 2025-06-05 10:37:14,940 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 06:37:34] 2025-06-05 10:37:14,958 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,958 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,958 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,958 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | job 6667885809 has completed (purged errors)
[2025-06-05 06:37:34] 2025-06-05 10:37:14,959 | INFO     | overall cleanup function is called
[2025-06-05 06:37:34] 2025-06-05 10:37:15,074 | INFO     | number of running child processes to parent process 1975593: 1
[2025-06-05 06:37:34] 2025-06-05 10:37:15,075 | INFO     | maximum number of monitored processes: 6
[2025-06-05 06:37:34] 2025-06-05 10:37:15,075 | INFO     | aborting job monitoring since job object (job id=6667885809) has expired
[2025-06-05 06:37:34] 2025-06-05 10:37:15,967 | INFO     | --- collectZombieJob: --- 10, [1975593]
[2025-06-05 06:37:34] 2025-06-05 10:37:15,967 | INFO     | zombie collector waiting for pid 1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:15,968 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:37:34] 2025-06-05 10:37:15,968 | INFO     | collected zombie processes
[2025-06-05 06:37:34] 2025-06-05 10:37:15,968 | INFO     | will attempt to kill all subprocesses of pid=1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:16,221 | INFO     | process IDs to be killed: [1975593] (in reverse order)
[2025-06-05 06:37:34] 2025-06-05 10:37:16,311 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:37:34] 2025-06-05 10:37:16,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:37:34] 2025-06-05 10:37:16,322 | INFO     | did not find any defunct processes belonging to 1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:16,332 | INFO     | did not find any defunct processes belonging to 1975593
[2025-06-05 06:37:34] 2025-06-05 10:37:16,333 | INFO     | ready for new job
[2025-06-05 06:37:34] 2025-06-05 10:37:16,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:37:34] 2025-06-05 10:37:16,335 | INFO     | **************************************
[2025-06-05 06:37:34] 2025-06-05 10:37:16,335 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:37:34] 2025-06-05 10:37:16,335 | INFO     | **************************************
[2025-06-05 06:37:34] 2025-06-05 10:37:16,335 | INFO     | 
[2025-06-05 06:37:34] 2025-06-05 10:37:16,351 | INFO     | architecture information:
[2025-06-05 06:37:34] 2025-06-05 10:37:16,352 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:37:34] 2025-06-05 10:37:16,366 | INFO     | cat /etc/os-release:
[2025-06-05 06:37:34] NAME="CentOS Linux"
[2025-06-05 06:37:34] VERSION="7 (Core)"
[2025-06-05 06:37:34] ID="centos"
[2025-06-05 06:37:34] ID_LIKE="rhel fedora"
[2025-06-05 06:37:34] VERSION_ID="7"
[2025-06-05 06:37:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:37:34] ANSI_COLOR="0;31"
[2025-06-05 06:37:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:37:34] HOME_URL="https://www.centos.org/"
[2025-06-05 06:37:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:37:34] 
[2025-06-05 06:37:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:37:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:37:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:37:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:37:34] 
[2025-06-05 06:37:34] 2025-06-05 10:37:16,367 | INFO     | **************************************
[2025-06-05 06:37:34] 2025-06-05 10:37:16,870 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 06:37:34] 2025-06-05 10:37:16,886 | INFO     | sufficient remaining disk space (75865522176 B)
[2025-06-05 06:37:34] 2025-06-05 10:37:16,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:37:34] 2025-06-05 10:37:16,887 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:37:34] 2025-06-05 10:37:16,887 | INFO     | update_server=False
[2025-06-05 06:37:34] 2025-06-05 10:37:16,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | INFO     | aborting loop
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:37:34] 2025-06-05 10:37:16,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:37:34] 2025-06-05 10:37:16,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:37:34] 2025-06-05 10:37:17,027 | INFO     | all data control threads have been joined
[2025-06-05 06:37:34] 2025-06-05 10:37:17,348 | INFO     | all job control threads have been joined
[2025-06-05 06:37:34] 2025-06-05 10:37:17,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:37:34] 2025-06-05 10:37:17,893 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:17,893 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,008 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,033 | INFO     | [data] control thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,100 | INFO     | [job] validate thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,221 | INFO     | all payload control threads have been joined
[2025-06-05 06:37:34] 2025-06-05 10:37:18,354 | INFO     | [job] control thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,441 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,775 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:18,958 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:19,110 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:19,226 | INFO     | [payload] control thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:19,303 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:19,495 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:19,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:37:34] 2025-06-05 10:37:20,838 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:20,934 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:27,618 | INFO     | job.realtimelogging is not enabled
[2025-06-05 06:37:34] 2025-06-05 10:37:28,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:37:34] 2025-06-05 10:37:29,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395836266304)>', '<ExcThread(monitor, started 140394889209600)>']
[2025-06-05 06:37:34] 2025-06-05 10:37:29,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:37:34] 2025-06-05 10:37:29,955 | INFO     | [monitor] control thread has ended
[2025-06-05 06:37:34] 2025-06-05 10:37:34,429 | INFO     | all workflow threads have been joined
[2025-06-05 06:37:34] 2025-06-05 10:37:34,430 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:37:34] 2025-06-05 10:37:34,430 | INFO     | traces error code: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:34,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:37:34] 2025-06-05 10:37:34,625 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:37:34] 2025-06-05 10:37:34,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:37:34] 2025-06-05 10:37:34,630 [wrapper] pilotpid: 1955623
[2025-06-05 06:37:34] 2025-06-05 10:37:34,632 [wrapper] Pilot exit status: 0
[2025-06-05 06:37:34] 2025-06-05 10:37:34,642 [wrapper] pandaids: 6667885809
[2025-06-05 06:37:34] 2025-06-05 10:37:34,703 [wrapper] cleanup supervisor_pilot 2472769 1955625
[2025-06-05 06:37:34] 2025-06-05 10:37:34,706 [wrapper] Test setup, not cleaning
[2025-06-05 06:37:34] 2025-06-05 10:37:34,708 [wrapper] apfmon messages muted
[2025-06-05 06:37:34] 2025-06-05 10:37:34,711 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:37:34] 2025-06-05 10:37:34,714 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:37:34]  *** Error codes and diagnostics ***
[2025-06-05 06:37:34]     "exeErrorCode": 0,
[2025-06-05 06:37:34]     "exeErrorDiag": "",
[2025-06-05 06:37:34]     "pilotErrorCode": 0,
[2025-06-05 06:37:34]     "pilotErrorDiag": "",
[2025-06-05 06:37:34]  *** Listing of results directory ***
[2025-06-05 06:37:34] total 415148
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas    495897 May 27 22:39 pilot3.tar.gz
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas      5111 May 27 22:45 queuedata.json
[2025-06-05 06:37:34] -rwx------. 1 boincer umatlas     37140 May 27 22:46 runpilot2-wrapper.sh
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas       100 Jun  5 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:37:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 04:48 run_atlas
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas       105 Jun  5 04:48 job.xml
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas 224231788 Jun  5 04:48 EVNT.44871834._003034.pool.root.1
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 04:48 input.tar.gz
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:48 start_atlas.sh
[2025-06-05 06:37:34] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 04:48 shared
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas         0 Jun  5 04:48 boinc_lockfile
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 04:48 pandaJob.out
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas    983281 Jun  5 04:48 agis_schedconf.cvmfs.json
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas   1598969 Jun  5 04:48 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:37:34] drwx------. 4 boincer umatlas      4096 Jun  5 04:48 pilot3
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas      6841 Jun  5 06:36 init_data.xml
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas        95 Jun  5 06:36 pilot_heartbeat.json
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas       529 Jun  5 06:36 boinc_task_state.xml
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas 195040105 Jun  5 06:36 HITS.44871837._077544.pool.root.1
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas      1037 Jun  5 06:37 memory_monitor_summary.json
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas    381675 Jun  5 06:37 log.44871837._077544.job.log.tgz.1
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas      7713 Jun  5 06:37 heartbeat.json
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas        27 Jun  5 06:37 wrapper_checkpoint.txt
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 06:37 boinc_mmap_file
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas      4548 Jun  5 06:37 pilotlog.txt
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas    618050 Jun  5 06:37 log.44871837._077544.job.log.1
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas       357 Jun  5 06:37 output.list
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas       620 Jun  5 06:37 runtime_log
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas   1024000 Jun  5 06:37 result.tar.gz
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 06:37 runtime_log.err
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas       654 Jun  5 06:37 QncLDmnzLe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh3aKDmfQPl3m.diag
[2025-06-05 06:37:34] -rw-r--r--. 1 boincer umatlas     21341 Jun  5 06:37 stderr.txt
[2025-06-05 06:37:34] HITS file was successfully produced:
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas 195040105 Jun  5 06:36 shared/HITS.pool.root.1
[2025-06-05 06:37:34]  *** Contents of shared directory: ***
[2025-06-05 06:37:34] total 410976
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas 224231788 Jun  5 04:48 ATLAS.root_0
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas    508874 Jun  5 04:48 input.tar.gz
[2025-06-05 06:37:34] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:48 start_atlas.sh
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas 195040105 Jun  5 06:36 HITS.pool.root.1
[2025-06-05 06:37:34] -rw-------. 1 boincer umatlas   1024000 Jun  5 06:37 result.tar.gz
06:37:36 (1949244): run_atlas exited; CPU time 50110.508535
06:37:36 (1949244): called boinc_finish(0)

</stderr_txt>
]]>

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