Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:42:47 (12346): wrapper (7.7.26015): starting
10:42:47 (12346): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 10:42:47] Arguments: --nthreads 8
[2025-06-05 10:42:47] Threads: 8
[2025-06-05 10:42:47] Checking for CVMFS
[2025-06-05 10:42:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:42:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:42:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:42:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:42:48] 2.11.2.0 18967 34518 94984 146812 3 167 24636396 25165824 3321 130560 0 17666552 99.819 19196895 2466 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 10:42:48] CVMFS is ok
[2025-06-05 10:42:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:42:48] Checking for apptainer binary...
[2025-06-05 10:42:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 10:42:48] Running /usr/bin/apptainer --version
[2025-06-05 10:42:48] apptainer version 1.3.2-1.el7
[2025-06-05 10:42:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:42:49] cg-vwn474.simple-grid.lan
[2025-06-05 10:42:49] apptainer works
[2025-06-05 10:42:49] Set ATHENA_PROC_NUMBER=8
[2025-06-05 10:42:49] Set ATHENA_CORE_NUMBER=8
[2025-06-05 10:42:49] Starting ATLAS job with PandaID=6668989957
[2025-06-05 10:42:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:22:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:22:37] 2025-06-05 13:13:28,698 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6668989957/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,699 | INFO     | extracted standard info from prmon json
[2025-06-05 15:22:37] 2025-06-05 13:13:28,699 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:22:37] 2025-06-05 13:13:28,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:22:37] 2025-06-05 13:13:28,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:22:37] 2025-06-05 13:13:28,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:22:37] 2025-06-05 13:13:28,705 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:22:37] 2025-06-05 13:13:28,706 | INFO     | sum of square deviations: 5640782972.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,708 | INFO     | sum of deviations: -15080373090.999996
[2025-06-05 15:22:37] 2025-06-05 13:13:28,708 | INFO     | mean x: 1749121050.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,708 | INFO     | mean y: 2492152.4714828897
[2025-06-05 15:22:37] 2025-06-05 13:13:28,708 | INFO     | -- intersect: 4678686600.344253
[2025-06-05 15:22:37] 2025-06-05 13:13:28,708 | INFO     | intersect: 4678686600.344253
[2025-06-05 15:22:37] 2025-06-05 13:13:28,709 | INFO     | chi2: 2.6268188826507344
[2025-06-05 15:22:37] 2025-06-05 13:13:28,709 | INFO     | sum of square deviations: 5325139844.5
[2025-06-05 15:22:37] 2025-06-05 13:13:28,711 | INFO     | sum of deviations: 3064017525.4999948
[2025-06-05 15:22:37] 2025-06-05 13:13:28,711 | INFO     | mean x: 1749120897.5
[2025-06-05 15:22:37] 2025-06-05 13:13:28,711 | INFO     | mean y: 2500785.003875969
[2025-06-05 15:22:37] 2025-06-05 13:13:28,712 | INFO     | -- intersect: -1003921063.1835665
[2025-06-05 15:22:37] 2025-06-05 13:13:28,712 | INFO     | intersect: -1003921063.1835665
[2025-06-05 15:22:37] 2025-06-05 13:13:28,712 | INFO     | chi2: 1.806181993109462
[2025-06-05 15:22:37] 2025-06-05 13:13:28,712 | INFO     | current chi2=1.806181993109462 (change=31.240710768500495 %)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,713 | INFO     | sum of square deviations: 5021496942.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,714 | INFO     | sum of deviations: 2937518256.999996
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | mean x: 1749120745.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | mean y: 2500721.4743083003
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | -- intersect: -1020714901.5722536
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | intersect: -1020714901.5722536
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | chi2: 1.8062490900927526
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | current chi2=1.8062490900927526 (change=-0.0037148517450911415 %)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,715 | INFO     | right removable region: 252
[2025-06-05 15:22:37] 2025-06-05 13:13:28,716 | INFO     | sum of square deviations: 5325139844.5
[2025-06-05 15:22:37] 2025-06-05 13:13:28,718 | INFO     | sum of deviations: -59919683533.99999
[2025-06-05 15:22:37] 2025-06-05 13:13:28,718 | INFO     | mean x: 1749121202.5
[2025-06-05 15:22:37] 2025-06-05 13:13:28,718 | INFO     | mean y: 2513658.3720930233
[2025-06-05 15:22:37] 2025-06-05 13:13:28,718 | INFO     | -- intersect: 19684022872.568188
[2025-06-05 15:22:37] 2025-06-05 13:13:28,718 | INFO     | intersect: 19684022872.568188
[2025-06-05 15:22:37] 2025-06-05 13:13:28,719 | INFO     | chi2: 1.0415044852010322
[2025-06-05 15:22:37] 2025-06-05 13:13:28,719 | INFO     | current chi2=1.0415044852010322 (change=60.351111678090064 %)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,719 | INFO     | sum of square deviations: 5021496942.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,721 | INFO     | sum of deviations: -56864302419.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,721 | INFO     | mean x: 1749121355.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,721 | INFO     | mean y: 2512095.822134387
[2025-06-05 15:22:37] 2025-06-05 13:13:28,721 | INFO     | -- intersect: 19809865729.02705
[2025-06-05 15:22:37] 2025-06-05 13:13:28,721 | INFO     | intersect: 19809865729.02705
[2025-06-05 15:22:37] 2025-06-05 13:13:28,722 | INFO     | chi2: 1.0261138253125373
[2025-06-05 15:22:37] 2025-06-05 13:13:28,722 | INFO     | current chi2=1.0261138253125373 (change=1.477733423829111 %)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,722 | INFO     | left removable region: 20
[2025-06-05 15:22:37] 2025-06-05 13:13:28,722 | INFO     | sum of square deviations: 3871990738.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,724 | INFO     | sum of deviations: -21241989130.0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,724 | INFO     | mean x: 1749121324.5
[2025-06-05 15:22:37] 2025-06-05 13:13:28,724 | INFO     | mean y: 2512212.724137931
[2025-06-05 15:22:37] 2025-06-05 13:13:28,724 | INFO     | -- intersect: 9598303803.194674
[2025-06-05 15:22:37] 2025-06-05 13:13:28,724 | INFO     | intersect: 9598303803.194674
[2025-06-05 15:22:37] 2025-06-05 13:13:28,725 | INFO     | chi2: 0.1347536058168085
[2025-06-05 15:22:37] 2025-06-05 13:13:28,725 | INFO     | -- intersect: 9598303803.194674
[2025-06-05 15:22:37] 2025-06-05 13:13:28,725 | INFO     | current memory leak: -5.49 B/s (using 232 data points, chi2=0.13)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | ..............................
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . Timing measurements:
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . get job = 0 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . initial setup = 2 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . payload setup = 17 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . stage-in = 0 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . payload execution = 16076 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . stage-out = 3 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,726 | INFO     | . log creation = 1 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,727 | INFO     | ..............................
[2025-06-05 15:22:37] 2025-06-05 13:13:28,834 | INFO     | 
[2025-06-05 15:22:37] 2025-06-05 13:13:28,834 | INFO     | job summary report
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | --------------------------------------------------
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | PanDA job id: 6668989957
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | task id: 44871837
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | errors: (none)
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | pilot state: finished 
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | transexitcode: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | exeerrorcode: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | exeerrordiag: 
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | exitcode: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | exitmsg: OK
[2025-06-05 15:22:37] 2025-06-05 13:13:28,835 | INFO     | cpuconsumptiontime: 62319 s
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | nevents: 400
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | neventsw: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | pid: 24964
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | pgrp: 24964
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | corecount: 8
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | event service: False
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | sizes: {0: 2397392, 1: 2397392, 8: 2397626, 11: 2397654, 16098: 2428325, 16102: 2437266, 16106: 2437450, 16203: 2437620}
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | --------------------------------------------------
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | 
[2025-06-05 15:22:37] 2025-06-05 13:13:28,836 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:22:37] 2025-06-05 13:13:29,231 | INFO     | job 6668989957 has completed (purged errors)
[2025-06-05 15:22:37] 2025-06-05 13:13:29,231 | INFO     | overall cleanup function is called
[2025-06-05 15:22:37] 2025-06-05 13:13:30,240 | INFO     | --- collectZombieJob: --- 10, [24964]
[2025-06-05 15:22:37] 2025-06-05 13:13:30,240 | INFO     | zombie collector waiting for pid 24964
[2025-06-05 15:22:37] 2025-06-05 13:13:30,241 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:22:37] 2025-06-05 13:13:30,241 | INFO     | collected zombie processes
[2025-06-05 15:22:37] 2025-06-05 13:13:30,241 | INFO     | will attempt to kill all subprocesses of pid=24964
[2025-06-05 15:22:37] 2025-06-05 13:13:30,357 | INFO     | process IDs to be killed: [24964] (in reverse order)
[2025-06-05 15:22:37] 2025-06-05 13:13:31,163 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:22:37] 2025-06-05 13:13:31,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:22:37] 2025-06-05 13:13:31,167 | INFO     | did not find any defunct processes belonging to 24964
[2025-06-05 15:22:37] 2025-06-05 13:13:31,173 | INFO     | did not find any defunct processes belonging to 24964
[2025-06-05 15:22:37] 2025-06-05 13:13:31,173 | INFO     | ready for new job
[2025-06-05 15:22:37] 2025-06-05 13:13:31,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:22:37] 2025-06-05 13:13:31,175 | INFO     | **************************************
[2025-06-05 15:22:37] 2025-06-05 13:13:31,176 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:22:37] 2025-06-05 13:13:31,176 | INFO     | **************************************
[2025-06-05 15:22:37] 2025-06-05 13:13:31,176 | INFO     | 
[2025-06-05 15:22:37] 2025-06-05 13:13:31,176 | INFO     | pilot is running in a VM
[2025-06-05 15:22:37] 2025-06-05 13:13:31,177 | INFO     | architecture information:
[2025-06-05 15:22:37] 2025-06-05 13:13:31,191 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:22:37] 2025-06-05 13:13:31,482 | INFO     | cat /etc/os-release:
[2025-06-05 15:22:37] NAME="CentOS Linux"
[2025-06-05 15:22:37] VERSION="7 (Core)"
[2025-06-05 15:22:37] ID="centos"
[2025-06-05 15:22:37] ID_LIKE="rhel fedora"
[2025-06-05 15:22:37] VERSION_ID="7"
[2025-06-05 15:22:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:22:37] ANSI_COLOR="0;31"
[2025-06-05 15:22:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:22:37] HOME_URL="https://www.centos.org/"
[2025-06-05 15:22:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:22:37] 
[2025-06-05 15:22:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:22:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:22:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:22:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:22:37] 
[2025-06-05 15:22:37] 2025-06-05 13:13:31,483 | INFO     | **************************************
[2025-06-05 15:22:37] 2025-06-05 13:13:31,986 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 15:22:37] 2025-06-05 13:13:32,177 | INFO     | sufficient remaining disk space (496993566720 B)
[2025-06-05 15:22:37] 2025-06-05 13:13:32,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:22:37] 2025-06-05 13:13:32,177 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:22:37] 2025-06-05 13:13:32,177 | INFO     | update_server=False
[2025-06-05 15:22:37] 2025-06-05 13:13:32,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:22:37] 2025-06-05 13:13:32,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:22:37] 2025-06-05 13:13:32,178 | INFO     | aborting loop
[2025-06-05 15:22:37] 2025-06-05 13:13:32,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:22:37] 2025-06-05 13:13:32,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:22:37] 2025-06-05 13:13:32,776 | INFO     | all data control threads have been joined
[2025-06-05 15:22:37] 2025-06-05 13:13:33,068 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:22:37] 2025-06-05 13:13:33,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:22:37] 2025-06-05 13:13:33,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:22:37] 2025-06-05 13:13:33,137 | INFO     | all job control threads have been joined
[2025-06-05 15:22:37] 2025-06-05 13:13:33,183 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,184 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,214 | INFO     | [job] validate thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,241 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,288 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,466 | INFO     | all payload control threads have been joined
[2025-06-05 15:22:37] 2025-06-05 13:13:33,550 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,782 | INFO     | [data] control thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:33,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:22:37] 2025-06-05 13:13:33,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,143 | INFO     | [job] control thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,186 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,386 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,440 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,472 | INFO     | [payload] control thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,608 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:34,857 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:36,196 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:22:37] 2025-06-05 13:13:37,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315891681088)>', '<ExcThread(monitor, started 140315222595328)>']
[2025-06-05 15:22:37] 2025-06-05 13:13:38,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:22:37] 2025-06-05 13:13:38,097 | INFO     | [monitor] control thread has ended
[2025-06-05 15:22:37] 2025-06-05 13:13:42,128 | INFO     | all workflow threads have been joined
[2025-06-05 15:22:37] 2025-06-05 13:13:42,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:22:37] 2025-06-05 13:13:42,129 | INFO     | traces error code: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:42,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:22:37] 2025-06-05 13:13:42,537 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:22:37] 2025-06-05 13:13:42,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:22:37] 2025-06-05 13:13:42,705 [wrapper] pilotpid: 15986
[2025-06-05 15:22:37] 2025-06-05 13:13:42,821 [wrapper] Pilot exit status: 0
[2025-06-05 15:22:37] 2025-06-05 13:13:43,179 [wrapper] pandaids: 6668989957
[2025-06-05 15:22:37] 2025-06-05 13:13:44,064 [wrapper] cleanup supervisor_pilot 18763 15987
[2025-06-05 15:22:37] 2025-06-05 13:13:44,135 [wrapper] Test setup, not cleaning
[2025-06-05 15:22:37] 2025-06-05 13:13:44,179 [wrapper] apfmon messages muted
[2025-06-05 15:22:37] 2025-06-05 13:13:44,260 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:22:37] 2025-06-05 13:13:44,314 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:22:37]  *** Error codes and diagnostics ***
[2025-06-05 15:22:37]     "exeErrorCode": 0,
[2025-06-05 15:22:37]     "exeErrorDiag": "",
[2025-06-05 15:22:37]     "pilotErrorCode": 0,
[2025-06-05 15:22:37]     "pilotErrorDiag": "",
[2025-06-05 15:22:37]  *** Listing of results directory ***
[2025-06-05 15:22:37] total 409032
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc    495897 May 29 00:52 pilot3.tar.gz
[2025-06-05 15:22:37] -rwx------. 1 boinc boinc     37140 May 29 01:07 runpilot2-wrapper.sh
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc      5111 May 29 01:07 queuedata.json
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc       100 Jun  5 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:22:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 10:42 run_atlas
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc       105 Jun  5 10:42 job.xml
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc 222595522 Jun  5 10:42 EVNT.44871834._003565.pool.root.1
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc      6392 Jun  5 10:42 init_data.xml
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:42 start_atlas.sh
[2025-06-05 15:22:37] drwxrwx--x. 2 boinc boinc        68 Jun  5 10:42 shared
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc    508873 Jun  5 10:42 input.tar.gz
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc         0 Jun  5 10:42 boinc_lockfile
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc      2559 Jun  5 10:42 pandaJob.out
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc    983281 Jun  5 10:43 agis_schedconf.cvmfs.json
[2025-06-05 15:22:37] drwx------. 4 boinc boinc      4096 Jun  5 10:43 pilot3
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc 188803533 Jun  5 15:10 HITS.44871837._091689.pool.root.1
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc       531 Jun  5 15:10 boinc_task_state.xml
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc      1014 Jun  5 15:11 memory_monitor_summary.json
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc   1598969 Jun  5 15:11 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc    418879 Jun  5 15:11 log.44871837._091689.job.log.tgz.1
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc        95 Jun  5 15:12 pilot_heartbeat.json
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc      7684 Jun  5 15:13 heartbeat.json
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc      4416 Jun  5 15:13 pilotlog.txt
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc   1396802 Jun  5 15:13 log.44871837._091689.job.log.1
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc       357 Jun  5 15:13 output.list
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc       620 Jun  5 15:13 runtime_log
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc   1832960 Jun  5 15:13 result.tar.gz
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc      8659 Jun  5 15:13 runtime_log.err
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc       657 Jun  5 15:13 QzhKDmC3ee7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoGdKDmQiSvUm.diag
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc      8192 Jun  5 15:22 boinc_mmap_file
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc        28 Jun  5 15:22 wrapper_checkpoint.txt
[2025-06-05 15:22:37] -rw-r--r--. 1 boinc boinc     20493 Jun  5 15:22 stderr.txt
[2025-06-05 15:22:37] HITS file was successfully produced:
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc 188803533 Jun  5 15:10 shared/HITS.pool.root.1
[2025-06-05 15:22:37]  *** Contents of shared directory: ***
[2025-06-05 15:22:37] total 404068
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc 222595522 Jun  5 10:42 ATLAS.root_0
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc     15093 Jun  5 10:42 start_atlas.sh
[2025-06-05 15:22:37] -rw-r--r--. 2 boinc boinc    508873 Jun  5 10:42 input.tar.gz
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc 188803533 Jun  5 15:10 HITS.pool.root.1
[2025-06-05 15:22:37] -rw-------. 1 boinc boinc   1832960 Jun  5 15:13 result.tar.gz
15:22:39 (12346): run_atlas exited; CPU time 62511.988305
15:22:39 (12346): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN