Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:37:06 (978633): wrapper (7.7.26015): starting
04:37:06 (978633): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 04:37:06] Arguments: --nthreads 12
[2025-06-05 04:37:06] Threads: 12
[2025-06-05 04:37:06] Checking for CVMFS
[2025-06-05 04:37:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:37:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:37:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:37:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:37:06] 2.12.6.0 84603 980 121712 146812 0 227 15407558 25181184 19242 16776704 0 3011586 99.351 4654031 23233 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 04:37:06] CVMFS is ok
[2025-06-05 04:37:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:37:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:37:06] Further information can be found at the LHC@home message board.
[2025-06-05 04:37:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:37:06] Checking for apptainer binary...
[2025-06-05 04:37:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:37:06] Running /usr/bin/apptainer --version
[2025-06-05 04:37:06] apptainer version 1.4.1-1.el9
[2025-06-05 04:37:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:37:06] c-16-37.aglt2.org
[2025-06-05 04:37:06] apptainer works
[2025-06-05 04:37:06] Set ATHENA_PROC_NUMBER=12
[2025-06-05 04:37:06] Set ATHENA_CORE_NUMBER=12
[2025-06-05 04:37:06] Starting ATLAS job with PandaID=6668191119
[2025-06-05 04:37:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:57:09]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:57:09] 2025-06-05 11:56:55,089 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 07:57:09] 2025-06-05 11:56:55,090 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668191119/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,091 | INFO     | extracted standard info from prmon json
[2025-06-05 07:57:09] 2025-06-05 11:56:55,091 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:57:09] 2025-06-05 11:56:55,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:57:09] 2025-06-05 11:56:55,092 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:57:09] 2025-06-05 11:56:55,092 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:57:09] 2025-06-05 11:56:55,097 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:57:09] 2025-06-05 11:56:55,097 | INFO     | sum of square deviations: 2334674143.566327
[2025-06-05 07:57:09] 2025-06-05 11:56:55,099 | INFO     | sum of deviations: -18624842799.79081
[2025-06-05 07:57:09] 2025-06-05 11:56:55,099 | INFO     | mean x: 1749118618.7193878
[2025-06-05 07:57:09] 2025-06-05 11:56:55,099 | INFO     | mean y: 2358013.076530612
[2025-06-05 07:57:09] 2025-06-05 11:56:55,099 | INFO     | -- intersect: 13955936674.839071
[2025-06-05 07:57:09] 2025-06-05 11:56:55,100 | INFO     | intersect: 13955936674.839071
[2025-06-05 07:57:09] 2025-06-05 11:56:55,100 | INFO     | chi2: 3.0058719576126682
[2025-06-05 07:57:09] 2025-06-05 11:56:55,100 | INFO     | sum of square deviations: 2160525853.3193817
[2025-06-05 07:57:09] 2025-06-05 11:56:55,102 | INFO     | sum of deviations: 132027543.24084353
[2025-06-05 07:57:09] 2025-06-05 11:56:55,102 | INFO     | mean x: 1749118466.2251308
[2025-06-05 07:57:09] 2025-06-05 11:56:55,102 | INFO     | mean y: 2374227.3664921466
[2025-06-05 07:57:09] 2025-06-05 11:56:55,102 | INFO     | -- intersect: -104512627.78411764
[2025-06-05 07:57:09] 2025-06-05 11:56:55,102 | INFO     | intersect: -104512627.78411764
[2025-06-05 07:57:09] 2025-06-05 11:56:55,103 | INFO     | chi2: 2.1250657867089267
[2025-06-05 07:57:09] 2025-06-05 11:56:55,103 | INFO     | current chi2=2.1250657867089267 (change=29.302850664447394 %)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,104 | INFO     | sum of square deviations: 1995261450.5591407
[2025-06-05 07:57:09] 2025-06-05 11:56:55,105 | INFO     | sum of deviations: 2477972860.3118305
[2025-06-05 07:57:09] 2025-06-05 11:56:55,105 | INFO     | mean x: 1749118313.7311828
[2025-06-05 07:57:09] 2025-06-05 11:56:55,105 | INFO     | mean y: 2376370.946236559
[2025-06-05 07:57:09] 2025-06-05 11:56:55,105 | INFO     | -- intersect: -2169904213.97944
[2025-06-05 07:57:09] 2025-06-05 11:56:55,105 | INFO     | intersect: -2169904213.97944
[2025-06-05 07:57:09] 2025-06-05 11:56:55,106 | INFO     | chi2: 2.122362453457983
[2025-06-05 07:57:09] 2025-06-05 11:56:55,106 | INFO     | current chi2=2.122362453457983 (change=0.12721174411876732 %)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,106 | INFO     | right removable region: 185
[2025-06-05 07:57:09] 2025-06-05 11:56:55,106 | INFO     | sum of square deviations: 2160499623.3193817
[2025-06-05 07:57:09] 2025-06-05 11:56:55,108 | INFO     | sum of deviations: -50149839683.214645
[2025-06-05 07:57:09] 2025-06-05 11:56:55,108 | INFO     | mean x: 1749118771.2251308
[2025-06-05 07:57:09] 2025-06-05 11:56:55,108 | INFO     | mean y: 2385369.5863874345
[2025-06-05 07:57:09] 2025-06-05 11:56:55,108 | INFO     | -- intersect: 40603191320.69881
[2025-06-05 07:57:09] 2025-06-05 11:56:55,108 | INFO     | intersect: 40603191320.69881
[2025-06-05 07:57:09] 2025-06-05 11:56:55,109 | INFO     | chi2: 1.4177716436338197
[2025-06-05 07:57:09] 2025-06-05 11:56:55,109 | INFO     | current chi2=1.4177716436338197 (change=52.833265567311585 %)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,109 | INFO     | sum of square deviations: 1995208990.5591407
[2025-06-05 07:57:09] 2025-06-05 11:56:55,110 | INFO     | sum of deviations: -60964173464.78496
[2025-06-05 07:57:09] 2025-06-05 11:56:55,111 | INFO     | mean x: 1749118923.7311828
[2025-06-05 07:57:09] 2025-06-05 11:56:55,111 | INFO     | mean y: 2395367.704301075
[2025-06-05 07:57:09] 2025-06-05 11:56:55,111 | INFO     | -- intersect: 53447217429.679184
[2025-06-05 07:57:09] 2025-06-05 11:56:55,111 | INFO     | intersect: 53447217429.679184
[2025-06-05 07:57:09] 2025-06-05 11:56:55,111 | INFO     | chi2: 1.2075818900318118
[2025-06-05 07:57:09] 2025-06-05 11:56:55,112 | INFO     | current chi2=1.2075818900318118 (change=14.825360243718869 %)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,112 | INFO     | left removable region: 20
[2025-06-05 07:57:09] 2025-06-05 11:56:55,112 | INFO     | sum of square deviations: 1392851829.7818189
[2025-06-05 07:57:09] 2025-06-05 11:56:55,113 | INFO     | sum of deviations: -26203364806.199997
[2025-06-05 07:57:09] 2025-06-05 11:56:55,113 | INFO     | mean x: 1749118893.2363636
[2025-06-05 07:57:09] 2025-06-05 11:56:55,114 | INFO     | mean y: 2403194.1333333333
[2025-06-05 07:57:09] 2025-06-05 11:56:55,114 | INFO     | -- intersect: 32908129035.817898
[2025-06-05 07:57:09] 2025-06-05 11:56:55,114 | INFO     | intersect: 32908129035.817898
[2025-06-05 07:57:09] 2025-06-05 11:56:55,114 | INFO     | chi2: 0.2700406115251216
[2025-06-05 07:57:09] 2025-06-05 11:56:55,114 | INFO     | -- intersect: 32908129035.817898
[2025-06-05 07:57:09] 2025-06-05 11:56:55,115 | INFO     | current memory leak: -18.81 B/s (using 165 data points, chi2=0.27)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,115 | INFO     | ..............................
[2025-06-05 07:57:09] 2025-06-05 11:56:55,115 | INFO     | . Timing measurements:
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . get job = 0 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . initial setup = 3 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . payload setup = 8 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . stage-in = 0 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . payload execution = 11933 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . stage-out = 2 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | . log creation = 0 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,116 | INFO     | ..............................
[2025-06-05 07:57:09] 2025-06-05 11:56:55,588 | INFO     | 
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | job summary report
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | --------------------------------------------------
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | PanDA job id: 6668191119
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | task id: 44871837
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | errors: (none)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:57:09] 2025-06-05 11:56:55,589 | INFO     | pilot state: finished 
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | transexitcode: 0
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | exeerrorcode: 0
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | exeerrordiag: 
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | exitcode: 0
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | exitmsg: OK
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | cpuconsumptiontime: 72529 s
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | nevents: 400
[2025-06-05 07:57:09] 2025-06-05 11:56:55,590 | INFO     | neventsw: 0
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | pid: 990057
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | pgrp: 990057
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | corecount: 12
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | event service: False
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | sizes: {0: 2397278, 1: 2397420, 6: 2397626, 11: 2397654, 11946: 2426853, 11949: 2435794, 11953: 2435978, 11959: 2436148}
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | --------------------------------------------------
[2025-06-05 07:57:09] 2025-06-05 11:56:55,591 | INFO     | 
[2025-06-05 07:57:09] 2025-06-05 11:56:55,592 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 07:57:09] 2025-06-05 11:56:55,614 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,614 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,614 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,614 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:57:09] 2025-06-05 11:56:55,616 | INFO     | job 6668191119 has completed (purged errors)
[2025-06-05 07:57:09] 2025-06-05 11:56:55,617 | INFO     | overall cleanup function is called
[2025-06-05 07:57:09] 2025-06-05 11:56:56,625 | INFO     | --- collectZombieJob: --- 10, [990057]
[2025-06-05 07:57:09] 2025-06-05 11:56:56,625 | INFO     | zombie collector waiting for pid 990057
[2025-06-05 07:57:09] 2025-06-05 11:56:56,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:57:09] 2025-06-05 11:56:56,625 | INFO     | collected zombie processes
[2025-06-05 07:57:09] 2025-06-05 11:56:56,625 | INFO     | will attempt to kill all subprocesses of pid=990057
[2025-06-05 07:57:09] 2025-06-05 11:56:57,078 | INFO     | process IDs to be killed: [990057] (in reverse order)
[2025-06-05 07:57:09] 2025-06-05 11:56:57,209 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:57:09] 2025-06-05 11:56:57,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:57:09] 2025-06-05 11:56:57,225 | INFO     | did not find any defunct processes belonging to 990057
[2025-06-05 07:57:09] 2025-06-05 11:56:57,242 | INFO     | did not find any defunct processes belonging to 990057
[2025-06-05 07:57:09] 2025-06-05 11:56:57,242 | INFO     | ready for new job
[2025-06-05 07:57:09] 2025-06-05 11:56:57,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:57:09] 2025-06-05 11:56:57,245 | INFO     | **************************************
[2025-06-05 07:57:09] 2025-06-05 11:56:57,245 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:57:09] 2025-06-05 11:56:57,246 | INFO     | **************************************
[2025-06-05 07:57:09] 2025-06-05 11:56:57,246 | INFO     | 
[2025-06-05 07:57:09] 2025-06-05 11:56:57,261 | INFO     | architecture information:
[2025-06-05 07:57:09] 2025-06-05 11:56:57,261 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:57:09] 2025-06-05 11:56:57,278 | INFO     | cat /etc/os-release:
[2025-06-05 07:57:09] NAME="CentOS Linux"
[2025-06-05 07:57:09] VERSION="7 (Core)"
[2025-06-05 07:57:09] ID="centos"
[2025-06-05 07:57:09] ID_LIKE="rhel fedora"
[2025-06-05 07:57:09] VERSION_ID="7"
[2025-06-05 07:57:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:57:09] ANSI_COLOR="0;31"
[2025-06-05 07:57:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:57:09] HOME_URL="https://www.centos.org/"
[2025-06-05 07:57:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:57:09] 
[2025-06-05 07:57:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:57:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:57:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:57:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:57:09] 
[2025-06-05 07:57:09] 2025-06-05 11:56:57,278 | INFO     | **************************************
[2025-06-05 07:57:09] 2025-06-05 11:56:57,783 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 07:57:09] 2025-06-05 11:56:57,802 | INFO     | sufficient remaining disk space (64544047104 B)
[2025-06-05 07:57:09] 2025-06-05 11:56:57,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:57:09] 2025-06-05 11:56:57,803 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:57:09] 2025-06-05 11:56:57,803 | INFO     | update_server=False
[2025-06-05 07:57:09] 2025-06-05 11:56:57,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:57:09] 2025-06-05 11:56:57,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:57:09] 2025-06-05 11:56:57,804 | INFO     | aborting loop
[2025-06-05 07:57:09] 2025-06-05 11:56:57,822 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:57:09] 2025-06-05 11:56:57,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:57:09] 2025-06-05 11:56:57,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:57:09] 2025-06-05 11:56:58,298 | INFO     | all data control threads have been joined
[2025-06-05 07:57:09] 2025-06-05 11:56:58,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:57:09] 2025-06-05 11:56:58,809 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:58,809 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:58,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:58,983 | INFO     | all payload control threads have been joined
[2025-06-05 07:57:09] 2025-06-05 11:56:59,050 | INFO     | all job control threads have been joined
[2025-06-05 07:57:09] 2025-06-05 11:56:59,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:57:09] 2025-06-05 11:56:59,303 | INFO     | [data] control thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,329 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,443 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,447 | INFO     | [job] validate thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,451 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,460 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,646 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,757 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:56:59,988 | INFO     | [payload] control thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:57:00,057 | INFO     | [job] control thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:57:00,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:57:09] 2025-06-05 11:57:00,450 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:57:01,256 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:57:03,230 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:57:09] 2025-06-05 11:57:03,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140468286269248)>', '<ExcThread(monitor, started 140467559716608)>']
[2025-06-05 07:57:09] 2025-06-05 11:57:03,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:57:09] 2025-06-05 11:57:03,856 | INFO     | [monitor] control thread has ended
[2025-06-05 07:57:09] 2025-06-05 11:57:08,787 | INFO     | all workflow threads have been joined
[2025-06-05 07:57:09] 2025-06-05 11:57:08,787 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:57:09] 2025-06-05 11:57:08,787 | INFO     | traces error code: 0
[2025-06-05 07:57:09] 2025-06-05 11:57:08,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:57:09] 2025-06-05 11:57:08,977 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:57:09] 2025-06-05 11:57:08,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:57:09] 2025-06-05 11:57:08,984 [wrapper] pilotpid: 983608
[2025-06-05 07:57:09] 2025-06-05 11:57:08,987 [wrapper] Pilot exit status: 0
[2025-06-05 07:57:09] 2025-06-05 11:57:09,001 [wrapper] pandaids: 6668191119
[2025-06-05 07:57:09] 2025-06-05 11:57:09,093 [wrapper] cleanup supervisor_pilot 2124578 983609
[2025-06-05 07:57:09] 2025-06-05 11:57:09,097 [wrapper] Test setup, not cleaning
[2025-06-05 07:57:09] 2025-06-05 11:57:09,100 [wrapper] apfmon messages muted
[2025-06-05 07:57:09] 2025-06-05 11:57:09,103 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:57:09] 2025-06-05 11:57:09,106 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:57:09]  *** Error codes and diagnostics ***
[2025-06-05 07:57:09]     "exeErrorCode": 0,
[2025-06-05 07:57:09]     "exeErrorDiag": "",
[2025-06-05 07:57:09]     "pilotErrorCode": 0,
[2025-06-05 07:57:09]     "pilotErrorDiag": "",
[2025-06-05 07:57:09]  *** Listing of results directory ***
[2025-06-05 07:57:09] total 424936
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas      5111 May 28 01:56 queuedata.json
[2025-06-05 07:57:09] -rwx------. 1 boincer umatlas     37140 May 28 01:58 runpilot2-wrapper.sh
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas       100 Jun  5 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:57:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 04:37 run_atlas
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas       105 Jun  5 04:37 job.xml
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas 223392485 Jun  5 04:37 EVNT.44871834._003111.pool.root.1
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:37 start_atlas.sh
[2025-06-05 07:57:09] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 04:37 shared
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas    508879 Jun  5 04:37 input.tar.gz
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas         0 Jun  5 04:37 boinc_lockfile
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 04:37 pandaJob.out
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas    983281 Jun  5 04:37 agis_schedconf.cvmfs.json
[2025-06-05 07:57:09] drwx------. 4 boincer umatlas      4096 Jun  5 04:37 pilot3
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas      6610 Jun  5 07:55 init_data.xml
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas       531 Jun  5 07:55 boinc_task_state.xml
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas 205019457 Jun  5 07:56 HITS.44871837._079681.pool.root.1
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas        95 Jun  5 07:56 pilot_heartbeat.json
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas      1044 Jun  5 07:56 memory_monitor_summary.json
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas   1598969 Jun  5 07:56 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas    437149 Jun  5 07:56 log.44871837._079681.job.log.tgz.1
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas      7724 Jun  5 07:56 heartbeat.json
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 07:57 boinc_mmap_file
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas        28 Jun  5 07:57 wrapper_checkpoint.txt
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas      4353 Jun  5 07:57 pilotlog.txt
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas   1006559 Jun  5 07:57 log.44871837._079681.job.log.1
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas       357 Jun  5 07:57 output.list
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas       620 Jun  5 07:57 runtime_log
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas   1464320 Jun  5 07:57 result.tar.gz
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas      8657 Jun  5 07:57 runtime_log.err
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas       656 Jun  5 07:57 8phMDmWzOe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEQbKDmmlkwOm.diag
[2025-06-05 07:57:09] -rw-r--r--. 1 boincer umatlas     20898 Jun  5 07:57 stderr.txt
[2025-06-05 07:57:09] HITS file was successfully produced:
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas 205019457 Jun  5 07:56 shared/HITS.pool.root.1
[2025-06-05 07:57:09]  *** Contents of shared directory: ***
[2025-06-05 07:57:09] total 420332
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas 223392485 Jun  5 04:37 ATLAS.root_0
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:37 start_atlas.sh
[2025-06-05 07:57:09] -rw-r--r--. 2 boincer umatlas    508879 Jun  5 04:37 input.tar.gz
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas 205019457 Jun  5 07:56 HITS.pool.root.1
[2025-06-05 07:57:09] -rw-------. 1 boincer umatlas   1464320 Jun  5 07:57 result.tar.gz
07:57:10 (978633): run_atlas exited; CPU time 72964.177507
07:57:10 (978633): called boinc_finish(0)

</stderr_txt>
]]>

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