Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:18:58 (3550179): wrapper (7.7.26015): starting
04:18:58 (3550179): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 04:18:58] Arguments: --nthreads 12
[2025-06-05 04:18:58] Threads: 12
[2025-06-05 04:18:58] Checking for CVMFS
[2025-06-05 04:18:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:18:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:18:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:18:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:18:59] 2.12.6.0 3367424 24479 466944 146812 1 52 22154743 32935936 11000 16776704 0 89834565 99.616 89898247 32577 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 04:18:59] CVMFS is ok
[2025-06-05 04:18:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:18:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:18:59] Further information can be found at the LHC@home message board.
[2025-06-05 04:18:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:18:59] Checking for apptainer binary...
[2025-06-05 04:18:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:18:59] Running /usr/bin/apptainer --version
[2025-06-05 04:18:59] apptainer version 1.4.1-1.el9
[2025-06-05 04:18:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:18:59] c6-2-29-4.aglt2.org
[2025-06-05 04:18:59] apptainer works
[2025-06-05 04:18:59] Set ATHENA_PROC_NUMBER=12
[2025-06-05 04:18:59] Set ATHENA_CORE_NUMBER=12
[2025-06-05 04:18:59] Starting ATLAS job with PandaID=6667435959
[2025-06-05 04:18:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:41:25]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:41:25]  guid=9cb8af20-cfd7-4957-addb-1137c2b4a584
[2025-06-05 05:41:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 05:41:25]  is_altstaged=None
[2025-06-05 05:41:25]  is_tar=False
[2025-06-05 05:41:25]  lfn=log.44871837._072618.job.log.tgz.1
[2025-06-05 05:41:25]  mtime=0
[2025-06-05 05:41:25]  protocol_id=None
[2025-06-05 05:41:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 05:41:25]  replicas=None
[2025-06-05 05:41:25]  scope=mc23_13p6TeV
[2025-06-05 05:41:25]  status=None
[2025-06-05 05:41:25]  status_code=0
[2025-06-05 05:41:25]  storage_token=
[2025-06-05 05:41:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667435959/log.44871837._072618.job.log.tgz.1
[2025-06-05 05:41:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/11/log.44871837._072618.job.log.tgz.1
[2025-06-05 05:41:25]  workdir=None
[2025-06-05 05:41:25] ]
[2025-06-05 05:41:25] 2025-06-05 09:40:57,118 | INFO     | transferring file log.44871837._072618.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667435959/log.44871837._072618.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 05:41:25] 2025-06-05 09:40:57,118 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667435959/log.44871837._072618.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._072618.job
[2025-06-05 05:41:25] 2025-06-05 09:40:57,136 | INFO     | adding to output.list: log.44871837._072618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/11/log.44871837._072618.job.log.tg
[2025-06-05 05:41:25] 2025-06-05 09:40:57,137 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 05:41:25] 2025-06-05 09:40:57,137 | INFO     | summary of transferred files:
[2025-06-05 05:41:25] 2025-06-05 09:40:57,137 | INFO     |  -- lfn=log.44871837._072618.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 05:41:25] 2025-06-05 09:40:57,138 | INFO     | stage-out finished correctly
[2025-06-05 05:41:25] 2025-06-05 09:40:57,224 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 05:41:25] 2025-06-05 09:40:58,735 | INFO     | monitor loop #365: job 0:6667435959 is in state 'finished'
[2025-06-05 05:41:25] 2025-06-05 09:40:58,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:41:25] 2025-06-05 09:41:00,307 | INFO     | job 6667435959 has state=finished
[2025-06-05 05:41:25] 2025-06-05 09:41:00,307 | INFO     | preparing for final server update for job 6667435959 in state='finished'
[2025-06-05 05:41:25] 2025-06-05 09:41:00,308 | INFO     | this job has now completed (state=finished)
[2025-06-05 05:41:25] 2025-06-05 09:41:00,308 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 05:41:25] 2025-06-05 09:41:00,308 | INFO     | log transfer has been attempted: DONE
[2025-06-05 05:41:25] 2025-06-05 09:41:00,308 | INFO     | job 6667435959 has finished - writing final server update
[2025-06-05 05:41:25] 2025-06-05 09:41:00,308 | INFO     | total number of processed events: 400 (read)
[2025-06-05 05:41:25] 2025-06-05 09:41:00,323 | INFO     | executing command: lscpu
[2025-06-05 05:41:25] 2025-06-05 09:41:00,386 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 05:41:25] 2025-06-05 09:41:01,238 | INFO     | monitor loop #366: job 0:6667435959 is in state 'finished'
[2025-06-05 05:41:25] 2025-06-05 09:41:01,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:41:25] 2025-06-05 09:41:03,741 | INFO     | monitor loop #367: job 0:6667435959 is in state 'finished'
[2025-06-05 05:41:25] 2025-06-05 09:41:03,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,014 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 05:41:25] 2025-06-05 09:41:04,015 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667435959/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,015 | INFO     | extracted standard info from prmon json
[2025-06-05 05:41:25] 2025-06-05 09:41:04,015 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:41:25] 2025-06-05 09:41:04,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:41:25] 2025-06-05 09:41:04,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:41:25] 2025-06-05 09:41:04,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:41:25] 2025-06-05 09:41:04,018 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:41:25] 2025-06-05 09:41:04,018 | INFO     | sum of square deviations: 120605052.0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | sum of deviations: -8950969383.0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | mean x: 1749114081.0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | mean y: 2655312.0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | -- intersect: 129817006591.45703
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | intersect: 129817006591.45703
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | chi2: 0.24901249612950035
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | -- intersect: 129817006591.45703
[2025-06-05 05:41:25] 2025-06-05 09:41:04,019 | INFO     | current memory leak: -74.22 B/s (using 73 data points, chi2=0.25)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | ..............................
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . Timing measurements:
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . get job = 0 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . initial setup = 2 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . payload setup = 7 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . stage-in = 0 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . payload execution = 4878 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . stage-out = 0 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | . log creation = 0 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,020 | INFO     | ..............................
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | 
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | job summary report
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | --------------------------------------------------
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | PanDA job id: 6667435959
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | task id: 44871837
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | errors: (none)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,555 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | pilot state: finished 
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | transexitcode: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | exeerrorcode: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | exeerrordiag: 
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | exitcode: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | exitmsg: OK
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | cpuconsumptiontime: 47719 s
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | nevents: 400
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | neventsw: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | pid: 3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | pgrp: 3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | corecount: 12
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | event service: False
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 12: 2397682, 4888: 2423747, 4889: 2423746, 4890: 2432927, 4897: 2433041}
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | --------------------------------------------------
[2025-06-05 05:41:25] 2025-06-05 09:41:04,556 | INFO     | 
[2025-06-05 05:41:25] 2025-06-05 09:41:04,557 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | job 6667435959 has completed (purged errors)
[2025-06-05 05:41:25] 2025-06-05 09:41:04,573 | INFO     | overall cleanup function is called
[2025-06-05 05:41:25] 2025-06-05 09:41:05,580 | INFO     | --- collectZombieJob: --- 10, [3565086]
[2025-06-05 05:41:25] 2025-06-05 09:41:05,580 | INFO     | zombie collector waiting for pid 3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:05,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:41:25] 2025-06-05 09:41:05,580 | INFO     | collected zombie processes
[2025-06-05 05:41:25] 2025-06-05 09:41:05,580 | INFO     | will attempt to kill all subprocesses of pid=3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:05,767 | INFO     | process IDs to be killed: [3565086] (in reverse order)
[2025-06-05 05:41:25] 2025-06-05 09:41:05,849 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:41:25] 2025-06-05 09:41:05,849 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:41:25] 2025-06-05 09:41:05,857 | INFO     | did not find any defunct processes belonging to 3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:05,865 | INFO     | did not find any defunct processes belonging to 3565086
[2025-06-05 05:41:25] 2025-06-05 09:41:05,865 | INFO     | ready for new job
[2025-06-05 05:41:25] 2025-06-05 09:41:05,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:41:25] 2025-06-05 09:41:05,867 | INFO     | **************************************
[2025-06-05 05:41:25] 2025-06-05 09:41:05,867 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:41:25] 2025-06-05 09:41:05,867 | INFO     | **************************************
[2025-06-05 05:41:25] 2025-06-05 09:41:05,867 | INFO     | 
[2025-06-05 05:41:25] 2025-06-05 09:41:05,883 | INFO     | architecture information:
[2025-06-05 05:41:25] 2025-06-05 09:41:05,883 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:41:25] 2025-06-05 09:41:05,897 | INFO     | cat /etc/os-release:
[2025-06-05 05:41:25] NAME="CentOS Linux"
[2025-06-05 05:41:25] VERSION="7 (Core)"
[2025-06-05 05:41:25] ID="centos"
[2025-06-05 05:41:25] ID_LIKE="rhel fedora"
[2025-06-05 05:41:25] VERSION_ID="7"
[2025-06-05 05:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:41:25] ANSI_COLOR="0;31"
[2025-06-05 05:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:41:25] HOME_URL="https://www.centos.org/"
[2025-06-05 05:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:41:25] 
[2025-06-05 05:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:41:25] 
[2025-06-05 05:41:25] 2025-06-05 09:41:05,898 | INFO     | **************************************
[2025-06-05 05:41:25] 2025-06-05 09:41:06,400 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 05:41:25] 2025-06-05 09:41:06,416 | INFO     | sufficient remaining disk space (76552339456 B)
[2025-06-05 05:41:25] 2025-06-05 09:41:06,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:41:25] 2025-06-05 09:41:06,417 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:41:25] 2025-06-05 09:41:06,417 | INFO     | update_server=False
[2025-06-05 05:41:25] 2025-06-05 09:41:06,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:41:25] 2025-06-05 09:41:06,795 | INFO     | all job control threads have been joined
[2025-06-05 05:41:25] 2025-06-05 09:41:07,089 | INFO     | all data control threads have been joined
[2025-06-05 05:41:25] 2025-06-05 09:41:07,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:41:25] 2025-06-05 09:41:07,249 | INFO     | aborting loop
[2025-06-05 05:41:25] 2025-06-05 09:41:07,296 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:41:25] 2025-06-05 09:41:07,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:41:25] 2025-06-05 09:41:07,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:41:25] 2025-06-05 09:41:07,423 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:07,452 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:07,642 | INFO     | all payload control threads have been joined
[2025-06-05 05:41:25] 2025-06-05 09:41:07,699 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:07,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:41:25] 2025-06-05 09:41:07,801 | INFO     | [job] control thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:07,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:41:25] 2025-06-05 09:41:07,823 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:07,823 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,094 | INFO     | [data] control thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,254 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,309 | INFO     | [job] validate thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,560 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,647 | INFO     | [payload] control thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:08,662 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:09,108 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:41:25] 2025-06-05 09:41:09,741 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:10,113 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:11,820 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:17,167 | INFO     | job.realtimelogging is not enabled
[2025-06-05 05:41:25] 2025-06-05 09:41:18,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:41:25] 2025-06-05 09:41:19,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140112322099008)>', '<ExcThread(monitor, started 140111538800384)>']
[2025-06-05 05:41:25] 2025-06-05 09:41:20,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:41:25] 2025-06-05 09:41:20,361 | INFO     | [monitor] control thread has ended
[2025-06-05 05:41:25] 2025-06-05 09:41:24,862 | INFO     | all workflow threads have been joined
[2025-06-05 05:41:25] 2025-06-05 09:41:24,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:41:25] 2025-06-05 09:41:24,863 | INFO     | traces error code: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:24,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:41:25] 2025-06-05 09:41:24,986 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:41:25] 2025-06-05 09:41:24,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:41:25] 2025-06-05 09:41:24,991 [wrapper] pilotpid: 3554025
[2025-06-05 05:41:25] 2025-06-05 09:41:24,993 [wrapper] Pilot exit status: 0
[2025-06-05 05:41:25] 2025-06-05 09:41:25,002 [wrapper] pandaids: 6667435959
[2025-06-05 05:41:25] 2025-06-05 09:41:25,053 [wrapper] cleanup supervisor_pilot 3781787 3554026
[2025-06-05 05:41:25] 2025-06-05 09:41:25,055 [wrapper] Test setup, not cleaning
[2025-06-05 05:41:25] 2025-06-05 09:41:25,058 [wrapper] apfmon messages muted
[2025-06-05 05:41:25] 2025-06-05 09:41:25,060 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:41:25] 2025-06-05 09:41:25,062 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:41:25]  *** Error codes and diagnostics ***
[2025-06-05 05:41:25]     "exeErrorCode": 0,
[2025-06-05 05:41:25]     "exeErrorDiag": "",
[2025-06-05 05:41:25]     "pilotErrorCode": 0,
[2025-06-05 05:41:25]     "pilotErrorDiag": "",
[2025-06-05 05:41:25]  *** Listing of results directory ***
[2025-06-05 05:41:25] total 417300
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas    495897 May 27 15:34 pilot3.tar.gz
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas      5111 May 27 15:52 queuedata.json
[2025-06-05 05:41:25] -rwx------. 1 boincer umatlas     37140 May 27 15:54 runpilot2-wrapper.sh
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas       100 Jun  5 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:41:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 04:18 run_atlas
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas       105 Jun  5 04:18 job.xml
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas 221813724 Jun  5 04:18 EVNT.44871834._002851.pool.root.1
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:18 start_atlas.sh
[2025-06-05 05:41:25] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 04:18 shared
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas    508878 Jun  5 04:18 input.tar.gz
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas         0 Jun  5 04:18 boinc_lockfile
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 04:18 pandaJob.out
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas    983281 Jun  5 04:19 agis_schedconf.cvmfs.json
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas   1598969 Jun  5 04:19 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:41:25] drwx------. 4 boincer umatlas      4096 Jun  5 04:19 pilot3
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas      6842 Jun  5 05:39 init_data.xml
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas 199970203 Jun  5 05:40 HITS.44871837._072618.pool.root.1
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas       529 Jun  5 05:40 boinc_task_state.xml
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas        95 Jun  5 05:40 pilot_heartbeat.json
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas      1040 Jun  5 05:40 memory_monitor_summary.json
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas    367193 Jun  5 05:40 log.44871837._072618.job.log.tgz.1
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas      7724 Jun  5 05:41 heartbeat.json
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 05:41 boinc_mmap_file
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas        27 Jun  5 05:41 wrapper_checkpoint.txt
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas      4425 Jun  5 05:41 pilotlog.txt
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas    483244 Jun  5 05:41 log.44871837._072618.job.log.1
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas       357 Jun  5 05:41 output.list
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas       620 Jun  5 05:41 runtime_log
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas    870400 Jun  5 05:41 result.tar.gz
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 05:41 runtime_log.err
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas       654 Jun  5 05:41 m7ZLDmeYFe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmjJSKDmJb92Rn.diag
[2025-06-05 05:41:25] -rw-r--r--. 1 boincer umatlas     21293 Jun  5 05:41 stderr.txt
[2025-06-05 05:41:25] HITS file was successfully produced:
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas 199970203 Jun  5 05:40 shared/HITS.pool.root.1
[2025-06-05 05:41:25]  *** Contents of shared directory: ***
[2025-06-05 05:41:25] total 413276
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas 221813724 Jun  5 04:18 ATLAS.root_0
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:18 start_atlas.sh
[2025-06-05 05:41:25] -rw-r--r--. 2 boincer umatlas    508878 Jun  5 04:18 input.tar.gz
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas 199970203 Jun  5 05:40 HITS.pool.root.1
[2025-06-05 05:41:25] -rw-------. 1 boincer umatlas    870400 Jun  5 05:41 result.tar.gz
05:41:26 (3550179): run_atlas exited; CPU time 47793.211469
05:41:26 (3550179): called boinc_finish(0)

</stderr_txt>
]]>

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