Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:18:41 (4074789): wrapper (7.7.26015): starting
04:18:41 (4074789): wrapper: running run_atlas (--nthreads 10)
[2025-06-05 04:18:41] Arguments: --nthreads 10
[2025-06-05 04:18:41] Threads: 10
[2025-06-05 04:18:41] Checking for CVMFS
[2025-06-05 04:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:18:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:18:42] 2.12.6.0 1132017 121692 328296 146812 1 23 16487040 32935937 16014 130560 2 402331810 99.640 402429181 23268 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 04:18:42] CVMFS is ok
[2025-06-05 04:18:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:18:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:18:42] Further information can be found at the LHC@home message board.
[2025-06-05 04:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:18:42] Checking for apptainer binary...
[2025-06-05 04:18:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:18:42] Running /usr/bin/apptainer --version
[2025-06-05 04:18:42] apptainer version 1.4.1-1.el9
[2025-06-05 04:18:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:18:42] c-5-5.aglt2.org
[2025-06-05 04:18:42] apptainer works
[2025-06-05 04:18:42] Set ATHENA_PROC_NUMBER=10
[2025-06-05 04:18:42] Set ATHENA_CORE_NUMBER=10
[2025-06-05 04:18:42] Starting ATLAS job with PandaID=6668992105
[2025-06-05 04:18:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:27:18]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:27:18] 2025-06-05 10:26:53,478 | INFO     | executing command: lscpu
[2025-06-05 06:27:18] 2025-06-05 10:26:53,538 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 06:27:18] 2025-06-05 10:26:54,899 | INFO     | monitor loop #535: job 0:6668992105 is in state 'finished'
[2025-06-05 06:27:18] 2025-06-05 10:26:54,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:27:18] 2025-06-05 10:26:57,402 | INFO     | monitor loop #536: job 0:6668992105 is in state 'finished'
[2025-06-05 06:27:18] 2025-06-05 10:26:57,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,021 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 06:27:18] 2025-06-05 10:26:58,022 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668992105/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,023 | INFO     | extracted standard info from prmon json
[2025-06-05 06:27:18] 2025-06-05 10:26:58,023 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:27:18] 2025-06-05 10:26:58,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:27:18] 2025-06-05 10:26:58,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:27:18] 2025-06-05 10:26:58,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:27:18] 2025-06-05 10:26:58,027 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:27:18] 2025-06-05 10:26:58,028 | INFO     | sum of square deviations: 620218584.9285725
[2025-06-05 06:27:18] 2025-06-05 10:26:58,028 | INFO     | sum of deviations: -24358350163.285717
[2025-06-05 06:27:18] 2025-06-05 10:26:58,028 | INFO     | mean x: 1749115376.642857
[2025-06-05 06:27:18] 2025-06-05 10:26:58,029 | INFO     | mean y: 2393180.6825396824
[2025-06-05 06:27:18] 2025-06-05 10:26:58,029 | INFO     | -- intersect: 68696827458.49569
[2025-06-05 06:27:18] 2025-06-05 10:26:58,029 | INFO     | intersect: 68696827458.49569
[2025-06-05 06:27:18] 2025-06-05 10:26:58,029 | INFO     | chi2: 2.734150333141306
[2025-06-05 06:27:18] 2025-06-05 10:26:58,030 | INFO     | sum of square deviations: 549273907.3223155
[2025-06-05 06:27:18] 2025-06-05 10:26:58,030 | INFO     | sum of deviations: -14301925556.545456
[2025-06-05 06:27:18] 2025-06-05 10:26:58,030 | INFO     | mean x: 1749115224.1487603
[2025-06-05 06:27:18] 2025-06-05 10:26:58,030 | INFO     | mean y: 2414304.3636363638
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | -- intersect: 45545658562.126274
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | intersect: 45545658562.126274
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | chi2: 2.086997628143088
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | current chi2=2.086997628143088 (change=23.66924368254085 %)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | right removable region: 120
[2025-06-05 06:27:18] 2025-06-05 10:26:58,031 | INFO     | sum of square deviations: 549262927.3223155
[2025-06-05 06:27:18] 2025-06-05 10:26:58,032 | INFO     | sum of deviations: -45119001662.7438
[2025-06-05 06:27:18] 2025-06-05 10:26:58,032 | INFO     | mean x: 1749115529.1487603
[2025-06-05 06:27:18] 2025-06-05 10:26:58,032 | INFO     | mean y: 2437169.041322314
[2025-06-05 06:27:18] 2025-06-05 10:26:58,032 | INFO     | -- intersect: 143682890631.8753
[2025-06-05 06:27:18] 2025-06-05 10:26:58,033 | INFO     | intersect: 143682890631.8753
[2025-06-05 06:27:18] 2025-06-05 10:26:58,033 | INFO     | chi2: 0.9824611607312732
[2025-06-05 06:27:18] 2025-06-05 10:26:58,033 | INFO     | current chi2=0.9824611607312732 (change=64.06703944466328 %)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,033 | INFO     | sum of square deviations: 483942418.50862134
[2025-06-05 06:27:18] 2025-06-05 10:26:58,034 | INFO     | sum of deviations: -43978722696.76725
[2025-06-05 06:27:18] 2025-06-05 10:26:58,034 | INFO     | mean x: 1749115681.6465516
[2025-06-05 06:27:18] 2025-06-05 10:26:58,034 | INFO     | mean y: 2434324.956896552
[2025-06-05 06:27:18] 2025-06-05 10:26:58,034 | INFO     | -- intersect: 158954967902.73077
[2025-06-05 06:27:18] 2025-06-05 10:26:58,034 | INFO     | intersect: 158954967902.73077
[2025-06-05 06:27:18] 2025-06-05 10:26:58,035 | INFO     | chi2: 0.9151781931213528
[2025-06-05 06:27:18] 2025-06-05 10:26:58,035 | INFO     | current chi2=0.9151781931213528 (change=6.848409921857855 %)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,035 | INFO     | left removable region: 20
[2025-06-05 06:27:18] 2025-06-05 10:26:58,035 | INFO     | sum of square deviations: 310045445.3100001
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | sum of deviations: -26943721299.049988
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | mean x: 1749115803.63
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | mean y: 2440607.35
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | -- intersect: 152004959740.1493
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | intersect: 152004959740.1493
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | chi2: 0.218911168057555
[2025-06-05 06:27:18] 2025-06-05 10:26:58,036 | INFO     | -- intersect: 152004959740.1493
[2025-06-05 06:27:18] 2025-06-05 10:26:58,037 | INFO     | current memory leak: -86.90 B/s (using 100 data points, chi2=0.22)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | ..............................
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | . Timing measurements:
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | . get job = 0 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | . initial setup = 3 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | . payload setup = 8 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,038 | INFO     | . stage-in = 0 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,039 | INFO     | . payload execution = 7645 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,039 | INFO     | . stage-out = 0 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,039 | INFO     | . log creation = 0 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,039 | INFO     | ..............................
[2025-06-05 06:27:18] 2025-06-05 10:26:58,165 | INFO     | 
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | job summary report
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | --------------------------------------------------
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | PanDA job id: 6668992105
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | task id: 44871837
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | errors: (none)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | pilot state: finished 
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | transexitcode: 0
[2025-06-05 06:27:18] 2025-06-05 10:26:58,167 | INFO     | exeerrorcode: 0
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | exeerrordiag: 
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | exitcode: 0
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | exitmsg: OK
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | cpuconsumptiontime: 62273 s
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | nevents: 400
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | neventsw: 0
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | pid: 4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | pgrp: 4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | corecount: 10
[2025-06-05 06:27:18] 2025-06-05 10:26:58,168 | INFO     | event service: False
[2025-06-05 06:27:18] 2025-06-05 10:26:58,169 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 7658: 2425048, 7659: 2433989, 7660: 2434045, 7668: 2434343}
[2025-06-05 06:27:18] 2025-06-05 10:26:58,169 | INFO     | --------------------------------------------------
[2025-06-05 06:27:18] 2025-06-05 10:26:58,169 | INFO     | 
[2025-06-05 06:27:18] 2025-06-05 10:26:58,169 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 06:27:18] 2025-06-05 10:26:58,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,192 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,192 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,195 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:27:18] 2025-06-05 10:26:58,195 | INFO     | job 6668992105 has completed (purged errors)
[2025-06-05 06:27:18] 2025-06-05 10:26:58,195 | INFO     | overall cleanup function is called
[2025-06-05 06:27:18] 2025-06-05 10:26:59,206 | INFO     | --- collectZombieJob: --- 10, [4085527]
[2025-06-05 06:27:18] 2025-06-05 10:26:59,206 | INFO     | zombie collector waiting for pid 4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:59,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:27:18] 2025-06-05 10:26:59,207 | INFO     | collected zombie processes
[2025-06-05 06:27:18] 2025-06-05 10:26:59,207 | INFO     | will attempt to kill all subprocesses of pid=4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:59,551 | INFO     | process IDs to be killed: [4085527] (in reverse order)
[2025-06-05 06:27:18] 2025-06-05 10:26:59,644 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:27:18] 2025-06-05 10:26:59,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:27:18] 2025-06-05 10:26:59,657 | INFO     | did not find any defunct processes belonging to 4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:59,670 | INFO     | did not find any defunct processes belonging to 4085527
[2025-06-05 06:27:18] 2025-06-05 10:26:59,670 | INFO     | ready for new job
[2025-06-05 06:27:18] 2025-06-05 10:26:59,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:27:18] 2025-06-05 10:26:59,673 | INFO     | **************************************
[2025-06-05 06:27:18] 2025-06-05 10:26:59,674 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:27:18] 2025-06-05 10:26:59,674 | INFO     | **************************************
[2025-06-05 06:27:18] 2025-06-05 10:26:59,674 | INFO     | 
[2025-06-05 06:27:18] 2025-06-05 10:26:59,689 | INFO     | architecture information:
[2025-06-05 06:27:18] 2025-06-05 10:26:59,689 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:27:18] 2025-06-05 10:26:59,705 | INFO     | cat /etc/os-release:
[2025-06-05 06:27:18] NAME="CentOS Linux"
[2025-06-05 06:27:18] VERSION="7 (Core)"
[2025-06-05 06:27:18] ID="centos"
[2025-06-05 06:27:18] ID_LIKE="rhel fedora"
[2025-06-05 06:27:18] VERSION_ID="7"
[2025-06-05 06:27:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:27:18] ANSI_COLOR="0;31"
[2025-06-05 06:27:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:27:18] HOME_URL="https://www.centos.org/"
[2025-06-05 06:27:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:27:18] 
[2025-06-05 06:27:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:27:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:27:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:27:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:27:18] 
[2025-06-05 06:27:18] 2025-06-05 10:26:59,706 | INFO     | **************************************
[2025-06-05 06:27:18] 2025-06-05 10:27:00,208 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 06:27:18] 2025-06-05 10:27:00,228 | INFO     | sufficient remaining disk space (76570165248 B)
[2025-06-05 06:27:18] 2025-06-05 10:27:00,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:27:18] 2025-06-05 10:27:00,229 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:27:18] 2025-06-05 10:27:00,229 | INFO     | update_server=False
[2025-06-05 06:27:18] 2025-06-05 10:27:00,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:27:18] 2025-06-05 10:27:00,229 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:27:18] 2025-06-05 10:27:00,230 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:27:18] 2025-06-05 10:27:00,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:27:18] 2025-06-05 10:27:00,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:27:18] 2025-06-05 10:27:00,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:27:18] 2025-06-05 10:27:00,484 | INFO     | all payload control threads have been joined
[2025-06-05 06:27:18] 2025-06-05 10:27:00,672 | INFO     | all data control threads have been joined
[2025-06-05 06:27:18] 2025-06-05 10:27:00,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:27:18] 2025-06-05 10:27:00,910 | INFO     | aborting loop
[2025-06-05 06:27:18] 2025-06-05 10:27:00,966 | INFO     | all job control threads have been joined
[2025-06-05 06:27:18] 2025-06-05 10:27:01,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:27:18] 2025-06-05 10:27:01,234 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,412 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,490 | INFO     | [payload] control thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,677 | INFO     | [data] control thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,728 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,915 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:01,971 | INFO     | [job] control thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,025 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,025 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,101 | INFO     | [job] validate thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,206 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,235 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:02,366 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:03,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:27:18] 2025-06-05 10:27:04,181 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:05,079 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:10,354 | INFO     | job.realtimelogging is not enabled
[2025-06-05 06:27:18] 2025-06-05 10:27:11,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:27:18] 2025-06-05 10:27:12,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058054567744)>', '<ExcThread(monitor, started 140057205798656)>']
[2025-06-05 06:27:18] 2025-06-05 10:27:13,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:27:18] 2025-06-05 10:27:13,297 | INFO     | [monitor] control thread has ended
[2025-06-05 06:27:18] 2025-06-05 10:27:17,722 | INFO     | all workflow threads have been joined
[2025-06-05 06:27:18] 2025-06-05 10:27:17,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:27:18] 2025-06-05 10:27:17,722 | INFO     | traces error code: 0
[2025-06-05 06:27:18] 2025-06-05 10:27:17,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:27:18] 2025-06-05 10:27:17,909 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:27:18] 2025-06-05 10:27:17,912 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:27:18] 2025-06-05 10:27:17,915 [wrapper] pilotpid: 4078560
[2025-06-05 06:27:18] 2025-06-05 10:27:17,918 [wrapper] Pilot exit status: 0
[2025-06-05 06:27:18] 2025-06-05 10:27:17,930 [wrapper] pandaids: 6668992105
[2025-06-05 06:27:18] 2025-06-05 10:27:17,998 [wrapper] cleanup supervisor_pilot  345214 4078561
[2025-06-05 06:27:18] 2025-06-05 10:27:18,001 [wrapper] Test setup, not cleaning
[2025-06-05 06:27:18] 2025-06-05 10:27:18,004 [wrapper] apfmon messages muted
[2025-06-05 06:27:18] 2025-06-05 10:27:18,007 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:27:18] 2025-06-05 10:27:18,010 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:27:18]  *** Error codes and diagnostics ***
[2025-06-05 06:27:18]     "exeErrorCode": 0,
[2025-06-05 06:27:18]     "exeErrorDiag": "",
[2025-06-05 06:27:18]     "pilotErrorCode": 0,
[2025-06-05 06:27:18]     "pilotErrorDiag": "",
[2025-06-05 06:27:18]  *** Listing of results directory ***
[2025-06-05 06:27:18] total 415712
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas    495897 May 28 19:59 pilot3.tar.gz
[2025-06-05 06:27:18] -rwx------. 1 boincer umatlas     37140 May 28 20:04 runpilot2-wrapper.sh
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas      5111 May 28 20:04 queuedata.json
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas       100 Jun  5 04:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:27:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 04:18 run_atlas
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas       105 Jun  5 04:18 job.xml
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas 224140662 Jun  5 04:18 EVNT.44871834._003588.pool.root.1
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:18 start_atlas.sh
[2025-06-05 06:27:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 04:18 shared
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 04:18 input.tar.gz
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas         0 Jun  5 04:18 boinc_lockfile
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 04:18 pandaJob.out
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas    983281 Jun  5 04:18 agis_schedconf.cvmfs.json
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas   1598969 Jun  5 04:18 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:27:18] drwx------. 4 boincer umatlas      4096 Jun  5 04:18 pilot3
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas      6672 Jun  5 06:20 init_data.xml
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas       529 Jun  5 06:26 boinc_task_state.xml
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas 195545332 Jun  5 06:26 HITS.44871837._092261.pool.root.1
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas        95 Jun  5 06:26 pilot_heartbeat.json
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas      1040 Jun  5 06:26 memory_monitor_summary.json
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas    378718 Jun  5 06:26 log.44871837._092261.job.log.tgz.1
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas      7715 Jun  5 06:26 heartbeat.json
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas        27 Jun  5 06:27 wrapper_checkpoint.txt
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 06:27 boinc_mmap_file
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas      4548 Jun  5 06:27 pilotlog.txt
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas    710539 Jun  5 06:27 log.44871837._092261.job.log.1
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas       357 Jun  5 06:27 output.list
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas       620 Jun  5 06:27 runtime_log
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas   1105920 Jun  5 06:27 result.tar.gz
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas      8646 Jun  5 06:27 runtime_log.err
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas       651 Jun  5 06:27 5qPKDmPwfe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGMdKDm5opf6m.diag
[2025-06-05 06:27:18] -rw-r--r--. 1 boincer umatlas     21171 Jun  5 06:27 stderr.txt
[2025-06-05 06:27:18] HITS file was successfully produced:
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas 195545332 Jun  5 06:26 shared/HITS.pool.root.1
[2025-06-05 06:27:18]  *** Contents of shared directory: ***
[2025-06-05 06:27:18] total 411452
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas 224140662 Jun  5 04:18 ATLAS.root_0
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:18 start_atlas.sh
[2025-06-05 06:27:18] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 04:18 input.tar.gz
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas 195545332 Jun  5 06:26 HITS.pool.root.1
[2025-06-05 06:27:18] -rw-------. 1 boincer umatlas   1105920 Jun  5 06:27 result.tar.gz
06:27:20 (4074789): run_atlas exited; CPU time 62526.442580
06:27:20 (4074789): called boinc_finish(0)

</stderr_txt>
]]>

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