Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:07:21 (1328324): wrapper (7.7.26015): starting
04:07:21 (1328324): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 04:07:21] Arguments: --nthreads 8
[2025-06-05 04:07:21] Threads: 8
[2025-06-05 04:07:21] Checking for CVMFS
[2025-06-05 04:07:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:07:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:07:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:07:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:07:22] 2.12.6.0 863165 33977 491092 146811 2 29 38019408 40960001 27208 16776704 1 161226945 99.682 143435236 27398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 04:07:22] CVMFS is ok
[2025-06-05 04:07:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:07:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:07:22] Further information can be found at the LHC@home message board.
[2025-06-05 04:07:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:07:22] Checking for apptainer binary...
[2025-06-05 04:07:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:07:22] Running /usr/bin/apptainer --version
[2025-06-05 04:07:22] apptainer version 1.4.1-1.el9
[2025-06-05 04:07:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:07:22] c7-11-14.aglt2.org
[2025-06-05 04:07:22] apptainer works
[2025-06-05 04:07:22] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:07:22] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:07:22] Starting ATLAS job with PandaID=6668229822
[2025-06-05 04:07:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:32:05]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:32:05] 2025-06-05 10:31:50,674 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668229822/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,674 | INFO     | extracted standard info from prmon json
[2025-06-05 06:32:05] 2025-06-05 10:31:50,674 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:32:05] 2025-06-05 10:31:50,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:32:05] 2025-06-05 10:31:50,674 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:32:05] 2025-06-05 10:31:50,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:32:05] 2025-06-05 10:31:50,677 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:32:05] 2025-06-05 10:31:50,677 | INFO     | sum of square deviations: 869180464.8226936
[2025-06-05 06:32:05] 2025-06-05 10:31:50,677 | INFO     | sum of deviations: 31759493051.702145
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | mean x: 1749115178.035461
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | mean y: 2101810.659574468
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | -- intersect: -63909840060.670876
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | intersect: -63909840060.670876
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | chi2: 1.7247065470155674
[2025-06-05 06:32:05] 2025-06-05 10:31:50,678 | INFO     | sum of square deviations: 779952409.8161771
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | sum of deviations: 30608265881.051464
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | mean x: 1749115025.5367646
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | mean y: 2099822.8897058824
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | -- intersect: -68639752018.800674
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | intersect: -68639752018.800674
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | chi2: 1.7188030064260058
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | current chi2=1.7188030064260058 (change=0.34229246707371985 %)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,679 | INFO     | right removable region: 135
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | sum of square deviations: 779949359.8161771
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | sum of deviations: 10133608222.08088
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | mean x: 1749115330.5367646
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | mean y: 2138320.6838235296
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | -- intersect: -22723503122.335716
[2025-06-05 06:32:05] 2025-06-05 10:31:50,680 | INFO     | intersect: -22723503122.335716
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | chi2: 0.10028566176268472
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | current chi2=0.10028566176268472 (change=94.18534927369419 %)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | sum of square deviations: 697043954.8091601
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | sum of deviations: 6845316099.297711
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | mean x: 1749115483.038168
[2025-06-05 06:32:05] 2025-06-05 10:31:50,681 | INFO     | mean y: 2144307.7404580154
[2025-06-05 06:32:05] 2025-06-05 10:31:50,682 | INFO     | -- intersect: -17175034108.289497
[2025-06-05 06:32:05] 2025-06-05 10:31:50,682 | INFO     | intersect: -17175034108.289497
[2025-06-05 06:32:05] 2025-06-05 10:31:50,682 | INFO     | chi2: 0.07276895595172
[2025-06-05 06:32:05] 2025-06-05 10:31:50,682 | INFO     | current chi2=0.07276895595172 (change=27.438325008095426 %)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,682 | INFO     | sum of square deviations: 620231687.3015863
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | sum of deviations: 4351294292.682538
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | mean x: 1749115635.5396826
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | mean y: 2149259.5634920634
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | -- intersect: -12268937558.457819
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | intersect: -12268937558.457819
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | chi2: 0.061371869287879105
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | current chi2=0.061371869287879105 (change=15.66201756612053 %)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | left removable region: 30
[2025-06-05 06:32:05] 2025-06-05 10:31:50,683 | INFO     | sum of square deviations: 358934371.9619045
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | sum of deviations: 2356269971.9904776
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | mean x: 1749115910.0190477
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | mean y: 2153605.504761905
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | -- intersect: -11480138474.190807
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | intersect: -11480138474.190807
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | chi2: 0.048836127262427136
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | -- intersect: -11480138474.190807
[2025-06-05 06:32:05] 2025-06-05 10:31:50,684 | INFO     | current memory leak: 6.56 B/s (using 105 data points, chi2=0.05)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | ..............................
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . Timing measurements:
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . get job = 0 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . initial setup = 4 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . payload setup = 13 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . stage-in = 0 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . payload execution = 8604 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . stage-out = 0 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | . log creation = 0 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,685 | INFO     | ..............................
[2025-06-05 06:32:05] 2025-06-05 10:31:50,761 | INFO     | 
[2025-06-05 06:32:05] 2025-06-05 10:31:50,761 | INFO     | job summary report
[2025-06-05 06:32:05] 2025-06-05 10:31:50,761 | INFO     | --------------------------------------------------
[2025-06-05 06:32:05] 2025-06-05 10:31:50,761 | INFO     | PanDA job id: 6668229822
[2025-06-05 06:32:05] 2025-06-05 10:31:50,761 | INFO     | task id: 44871837
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | errors: (none)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | pilot state: finished 
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | transexitcode: 0
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | exeerrorcode: 0
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | exeerrordiag: 
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | exitcode: 0
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | exitmsg: OK
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | cpuconsumptiontime: 40908 s
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | nevents: 400
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | neventsw: 0
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | pid: 1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | pgrp: 1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | corecount: 8
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | event service: False
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | sizes: {0: 2397390, 1: 2397418, 10: 2397624, 11: 2397652, 8622: 2425801, 8624: 2434926, 8629: 2435040}
[2025-06-05 06:32:05] 2025-06-05 10:31:50,762 | INFO     | --------------------------------------------------
[2025-06-05 06:32:05] 2025-06-05 10:31:50,763 | INFO     | 
[2025-06-05 06:32:05] 2025-06-05 10:31:50,763 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 06:32:05] 2025-06-05 10:31:50,784 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | job 6668229822 has completed (purged errors)
[2025-06-05 06:32:05] 2025-06-05 10:31:50,786 | INFO     | overall cleanup function is called
[2025-06-05 06:32:05] 2025-06-05 10:31:51,792 | INFO     | --- collectZombieJob: --- 10, [1352442]
[2025-06-05 06:32:05] 2025-06-05 10:31:51,792 | INFO     | zombie collector waiting for pid 1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:51,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:32:05] 2025-06-05 10:31:51,792 | INFO     | collected zombie processes
[2025-06-05 06:32:05] 2025-06-05 10:31:51,792 | INFO     | will attempt to kill all subprocesses of pid=1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:52,137 | INFO     | process IDs to be killed: [1352442] (in reverse order)
[2025-06-05 06:32:05] 2025-06-05 10:31:52,277 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:32:05] 2025-06-05 10:31:52,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:32:05] 2025-06-05 10:31:52,294 | INFO     | did not find any defunct processes belonging to 1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:52,312 | INFO     | did not find any defunct processes belonging to 1352442
[2025-06-05 06:32:05] 2025-06-05 10:31:52,312 | INFO     | ready for new job
[2025-06-05 06:32:05] 2025-06-05 10:31:52,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:32:05] 2025-06-05 10:31:52,314 | INFO     | **************************************
[2025-06-05 06:32:05] 2025-06-05 10:31:52,314 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:32:05] 2025-06-05 10:31:52,314 | INFO     | **************************************
[2025-06-05 06:32:05] 2025-06-05 10:31:52,314 | INFO     | 
[2025-06-05 06:32:05] 2025-06-05 10:31:52,330 | INFO     | architecture information:
[2025-06-05 06:32:05] 2025-06-05 10:31:52,331 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:32:05] 2025-06-05 10:31:52,350 | INFO     | cat /etc/os-release:
[2025-06-05 06:32:05] NAME="CentOS Linux"
[2025-06-05 06:32:05] VERSION="7 (Core)"
[2025-06-05 06:32:05] ID="centos"
[2025-06-05 06:32:05] ID_LIKE="rhel fedora"
[2025-06-05 06:32:05] VERSION_ID="7"
[2025-06-05 06:32:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:32:05] ANSI_COLOR="0;31"
[2025-06-05 06:32:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:32:05] HOME_URL="https://www.centos.org/"
[2025-06-05 06:32:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:32:05] 
[2025-06-05 06:32:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:32:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:32:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:32:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:32:05] 
[2025-06-05 06:32:05] 2025-06-05 10:31:52,350 | INFO     | **************************************
[2025-06-05 06:32:05] 2025-06-05 10:31:52,853 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 06:32:05] 2025-06-05 10:31:52,874 | INFO     | sufficient remaining disk space (86054535168 B)
[2025-06-05 06:32:05] 2025-06-05 10:31:52,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:32:05] 2025-06-05 10:31:52,875 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:32:05] 2025-06-05 10:31:52,875 | INFO     | update_server=False
[2025-06-05 06:32:05] 2025-06-05 10:31:52,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:32:05] 2025-06-05 10:31:52,875 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:32:05] 2025-06-05 10:31:52,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:32:05] 2025-06-05 10:31:52,876 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:32:05] 2025-06-05 10:31:52,876 | INFO     | aborting loop
[2025-06-05 06:32:05] 2025-06-05 10:31:52,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:32:05] 2025-06-05 10:31:52,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:32:05] 2025-06-05 10:31:53,632 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:32:05] 2025-06-05 10:31:53,766 | INFO     | all data control threads have been joined
[2025-06-05 06:32:05] 2025-06-05 10:31:53,871 | INFO     | all job control threads have been joined
[2025-06-05 06:32:05] 2025-06-05 10:31:53,880 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:53,881 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:53,940 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:53,950 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,176 | INFO     | all payload control threads have been joined
[2025-06-05 06:32:05] 2025-06-05 10:31:54,208 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,549 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,750 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,772 | INFO     | [data] control thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,844 | INFO     | [job] validate thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:54,878 | INFO     | [job] control thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:55,181 | INFO     | [payload] control thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:55,340 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:55,350 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:55,637 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:31:55,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:32:05] 2025-06-05 10:31:56,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:32:05] 2025-06-05 10:31:56,774 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:32:00,316 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:32:05] 2025-06-05 10:32:00,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724787144512)>', '<ExcThread(monitor, started 139724438087424)>']
[2025-06-05 06:32:05] 2025-06-05 10:32:00,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:32:05] 2025-06-05 10:32:00,914 | INFO     | [monitor] control thread has ended
[2025-06-05 06:32:05] 2025-06-05 10:32:05,530 | INFO     | all workflow threads have been joined
[2025-06-05 06:32:05] 2025-06-05 10:32:05,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:32:05] 2025-06-05 10:32:05,530 | INFO     | traces error code: 0
[2025-06-05 06:32:05] 2025-06-05 10:32:05,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:32:05] 2025-06-05 10:32:05,661 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:32:05] 2025-06-05 10:32:05,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:32:05] 2025-06-05 10:32:05,669 [wrapper] pilotpid: 1336147
[2025-06-05 06:32:05] 2025-06-05 10:32:05,672 [wrapper] Pilot exit status: 0
[2025-06-05 06:32:05] 2025-06-05 10:32:05,685 [wrapper] pandaids: 6668229822
[2025-06-05 06:32:05] 2025-06-05 10:32:05,780 [wrapper] cleanup supervisor_pilot 2811451 1336148
[2025-06-05 06:32:05] 2025-06-05 10:32:05,784 [wrapper] Test setup, not cleaning
[2025-06-05 06:32:05] 2025-06-05 10:32:05,787 [wrapper] apfmon messages muted
[2025-06-05 06:32:05] 2025-06-05 10:32:05,790 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:32:05] 2025-06-05 10:32:05,793 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:32:05]  *** Error codes and diagnostics ***
[2025-06-05 06:32:05]     "exeErrorCode": 0,
[2025-06-05 06:32:05]     "exeErrorDiag": "",
[2025-06-05 06:32:05]     "pilotErrorCode": 0,
[2025-06-05 06:32:05]     "pilotErrorDiag": "",
[2025-06-05 06:32:05]  *** Listing of results directory ***
[2025-06-05 06:32:05] total 419520
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas    495897 May 28 03:05 pilot3.tar.gz
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas      5111 May 28 03:25 queuedata.json
[2025-06-05 06:32:05] -rwx------. 1 boincer umatlas     37140 May 28 03:28 runpilot2-wrapper.sh
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas       100 Jun  5 04:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:32:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 04:07 run_atlas
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas       105 Jun  5 04:07 job.xml
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas 226174141 Jun  5 04:07 EVNT.44871834._003146.pool.root.1
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:07 start_atlas.sh
[2025-06-05 06:32:05] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 04:07 shared
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas    508880 Jun  5 04:07 input.tar.gz
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas         0 Jun  5 04:07 boinc_lockfile
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas      2558 Jun  5 04:07 pandaJob.out
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas    983087 Jun  5 04:07 agis_schedconf.cvmfs.json
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas   1598969 Jun  5 04:07 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:32:05] drwx------. 4 boincer umatlas      4096 Jun  5 04:07 pilot3
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas      6896 Jun  5 06:30 init_data.xml
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas        95 Jun  5 06:30 pilot_heartbeat.json
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas 197309613 Jun  5 06:31 HITS.44871837._080580.pool.root.1
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas       529 Jun  5 06:31 boinc_task_state.xml
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas      1034 Jun  5 06:31 memory_monitor_summary.json
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas    332662 Jun  5 06:31 log.44871837._080580.job.log.tgz.1
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas      7690 Jun  5 06:31 heartbeat.json
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 06:32 boinc_mmap_file
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas        27 Jun  5 06:32 wrapper_checkpoint.txt
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas      4476 Jun  5 06:32 pilotlog.txt
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas    800365 Jun  5 06:32 log.44871837._080580.job.log.1
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas       357 Jun  5 06:32 output.list
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas       620 Jun  5 06:32 runtime_log
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas   1157120 Jun  5 06:32 result.tar.gz
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas      8659 Jun  5 06:32 runtime_log.err
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas       654 Jun  5 06:32 2Z0KDmvNQe7n9Rq4apOajLDm4fhM0noT9bVof3QYDm28SKDmFFJyrn.diag
[2025-06-05 06:32:05] -rw-r--r--. 1 boincer umatlas     20949 Jun  5 06:32 stderr.txt
[2025-06-05 06:32:05] HITS file was successfully produced:
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas 197309613 Jun  5 06:31 shared/HITS.pool.root.1
[2025-06-05 06:32:05]  *** Contents of shared directory: ***
[2025-06-05 06:32:05] total 415216
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas 226174141 Jun  5 04:07 ATLAS.root_0
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 04:07 start_atlas.sh
[2025-06-05 06:32:05] -rw-r--r--. 2 boincer umatlas    508880 Jun  5 04:07 input.tar.gz
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas 197309613 Jun  5 06:31 HITS.pool.root.1
[2025-06-05 06:32:05] -rw-------. 1 boincer umatlas   1157120 Jun  5 06:32 result.tar.gz
06:32:07 (1328324): run_atlas exited; CPU time 41100.193765
06:32:07 (1328324): called boinc_finish(0)

</stderr_txt>
]]>

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