Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:53:49 (994770): wrapper (7.7.26015): starting
03:53:49 (994770): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 03:53:49] Arguments: --nthreads 8
[2025-06-05 03:53:49] Threads: 8
[2025-06-05 03:53:49] Checking for CVMFS
[2025-06-05 03:53:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 03:53:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 03:53:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 03:53:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 03:53:50] 2.12.6.0 10250 32569 581340 146810 3 527 29798386 32935936 22361 16776704 1 174917668 99.684 137920463 27841 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 03:53:50] CVMFS is ok
[2025-06-05 03:53:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 03:53:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 03:53:50] Further information can be found at the LHC@home message board.
[2025-06-05 03:53:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 03:53:50] Checking for apptainer binary...
[2025-06-05 03:53:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 03:53:50] Running /usr/bin/apptainer --version
[2025-06-05 03:53:50] apptainer version 1.4.1-1.el9
[2025-06-05 03:53:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 03:53:50] c6-12-29-2.aglt2.org
[2025-06-05 03:53:50] apptainer works
[2025-06-05 03:53:50] Set ATHENA_PROC_NUMBER=8
[2025-06-05 03:53:50] Set ATHENA_CORE_NUMBER=8
[2025-06-05 03:53:50] Starting ATLAS job with PandaID=6668850463
[2025-06-05 03:53:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:29:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:29:37] 2025-06-05 11:29:13,268 | INFO     | job 6668850463 has finished - writing final server update
[2025-06-05 07:29:37] 2025-06-05 11:29:13,268 | INFO     | total number of processed events: 400 (read)
[2025-06-05 07:29:37] 2025-06-05 11:29:13,286 | INFO     | executing command: lscpu
[2025-06-05 07:29:37] 2025-06-05 11:29:13,372 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 07:29:37] 2025-06-05 11:29:15,697 | INFO     | monitor loop #843: job 0:6668850463 is in state 'finished'
[2025-06-05 07:29:37] 2025-06-05 11:29:15,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,758 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 07:29:37] 2025-06-05 11:29:17,759 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668850463/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,759 | INFO     | extracted standard info from prmon json
[2025-06-05 07:29:37] 2025-06-05 11:29:17,759 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:29:37] 2025-06-05 11:29:17,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:29:37] 2025-06-05 11:29:17,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:29:37] 2025-06-05 11:29:17,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:29:37] 2025-06-05 11:29:17,767 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:29:37] 2025-06-05 11:29:17,767 | INFO     | sum of square deviations: 2912810152.767761
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | sum of deviations: 64830239211.33649
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | mean x: 1749116497.0331755
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | mean y: 2133002.0947867297
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | -- intersect: -38927846970.47802
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | intersect: -38927846970.47802
[2025-06-05 07:29:37] 2025-06-05 11:29:17,769 | INFO     | chi2: 1.935942213350937
[2025-06-05 07:29:37] 2025-06-05 11:29:17,770 | INFO     | sum of square deviations: 2710603845.262132
[2025-06-05 07:29:37] 2025-06-05 11:29:17,771 | INFO     | sum of deviations: 65389312417.1068
[2025-06-05 07:29:37] 2025-06-05 11:29:17,771 | INFO     | mean x: 1749116344.5339806
[2025-06-05 07:29:37] 2025-06-05 11:29:17,771 | INFO     | mean y: 2133389.699029126
[2025-06-05 07:29:37] 2025-06-05 11:29:17,771 | INFO     | -- intersect: -42192713823.59401
[2025-06-05 07:29:37] 2025-06-05 11:29:17,771 | INFO     | intersect: -42192713823.59401
[2025-06-05 07:29:37] 2025-06-05 11:29:17,772 | INFO     | chi2: 1.903227554328499
[2025-06-05 07:29:37] 2025-06-05 11:29:17,772 | INFO     | current chi2=1.903227554328499 (change=1.6898572073497902 %)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,772 | INFO     | right removable region: 205
[2025-06-05 07:29:37] 2025-06-05 11:29:17,772 | INFO     | sum of square deviations: 2710599575.262132
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | sum of deviations: 27550018891.43689
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | mean x: 1749116649.5339806
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | mean y: 2160968.723300971
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | -- intersect: -17775528210.368324
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | intersect: -17775528210.368324
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | chi2: 0.1692765888445224
[2025-06-05 07:29:37] 2025-06-05 11:29:17,774 | INFO     | current chi2=0.1692765888445224 (change=91.25611355147217 %)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,775 | INFO     | sum of square deviations: 2517970572.756221
[2025-06-05 07:29:37] 2025-06-05 11:29:17,776 | INFO     | sum of deviations: 24319065825.935318
[2025-06-05 07:29:37] 2025-06-05 11:29:17,776 | INFO     | mean x: 1749116802.0348258
[2025-06-05 07:29:37] 2025-06-05 11:29:17,776 | INFO     | mean y: 2163471.4378109453
[2025-06-05 07:29:37] 2025-06-05 11:29:17,776 | INFO     | -- intersect: -16891158121.027298
[2025-06-05 07:29:37] 2025-06-05 11:29:17,776 | INFO     | intersect: -16891158121.027298
[2025-06-05 07:29:37] 2025-06-05 11:29:17,777 | INFO     | chi2: 0.12713015564549887
[2025-06-05 07:29:37] 2025-06-05 11:29:17,777 | INFO     | current chi2=0.12713015564549887 (change=24.897969345149253 %)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,777 | INFO     | left removable region: 20
[2025-06-05 07:29:37] 2025-06-05 11:29:17,777 | INFO     | sum of square deviations: 1963242184.7351365
[2025-06-05 07:29:37] 2025-06-05 11:29:17,778 | INFO     | sum of deviations: 22563705691.843254
[2025-06-05 07:29:37] 2025-06-05 11:29:17,778 | INFO     | mean x: 1749116924.0378377
[2025-06-05 07:29:37] 2025-06-05 11:29:17,778 | INFO     | mean y: 2166457.308108108
[2025-06-05 07:29:37] 2025-06-05 11:29:17,778 | INFO     | -- intersect: -20100579806.743065
[2025-06-05 07:29:37] 2025-06-05 11:29:17,778 | INFO     | intersect: -20100579806.743065
[2025-06-05 07:29:37] 2025-06-05 11:29:17,779 | INFO     | chi2: 0.08501601378433825
[2025-06-05 07:29:37] 2025-06-05 11:29:17,779 | INFO     | -- intersect: -20100579806.743065
[2025-06-05 07:29:37] 2025-06-05 11:29:17,779 | INFO     | current memory leak: 11.49 B/s (using 185 data points, chi2=0.09)
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | ..............................
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . Timing measurements:
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . get job = 0 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . initial setup = 7 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . payload setup = 12 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . stage-in = 0 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . payload execution = 12861 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . stage-out = 2 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | . log creation = 0 s
[2025-06-05 07:29:37] 2025-06-05 11:29:17,780 | INFO     | ..............................
[2025-06-05 07:29:37] 2025-06-05 11:29:18,084 | INFO     | 
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | job summary report
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | --------------------------------------------------
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | PanDA job id: 6668850463
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | task id: 44871837
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | errors: (none)
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | pilot state: finished 
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | transexitcode: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | exeerrorcode: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | exeerrordiag: 
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | exitcode: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:18,085 | INFO     | exitmsg: OK
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | cpuconsumptiontime: 55192 s
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | nevents: 400
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | neventsw: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | pid: 1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | pgrp: 1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | corecount: 8
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | event service: False
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | sizes: {0: 2397392, 1: 2397420, 7: 2397626, 11: 2397654, 12878: 2427555, 12880: 2436496, 12882: 2436680, 12888: 2436850}
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | --------------------------------------------------
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | 
[2025-06-05 07:29:37] 2025-06-05 11:29:18,086 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 07:29:37] 2025-06-05 11:29:18,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:29:37] 2025-06-05 11:29:18,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:29:37] 2025-06-05 11:29:18,108 | INFO     | job 6668850463 has completed (purged errors)
[2025-06-05 07:29:37] 2025-06-05 11:29:18,108 | INFO     | overall cleanup function is called
[2025-06-05 07:29:37] 2025-06-05 11:29:19,116 | INFO     | --- collectZombieJob: --- 10, [1012542]
[2025-06-05 07:29:37] 2025-06-05 11:29:19,117 | INFO     | zombie collector waiting for pid 1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:19,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:29:37] 2025-06-05 11:29:19,117 | INFO     | collected zombie processes
[2025-06-05 07:29:37] 2025-06-05 11:29:19,117 | INFO     | will attempt to kill all subprocesses of pid=1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:19,486 | INFO     | process IDs to be killed: [1012542] (in reverse order)
[2025-06-05 07:29:37] 2025-06-05 11:29:19,602 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:29:37] 2025-06-05 11:29:19,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:29:37] 2025-06-05 11:29:19,617 | INFO     | did not find any defunct processes belonging to 1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:19,631 | INFO     | did not find any defunct processes belonging to 1012542
[2025-06-05 07:29:37] 2025-06-05 11:29:19,632 | INFO     | ready for new job
[2025-06-05 07:29:37] 2025-06-05 11:29:19,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:29:37] 2025-06-05 11:29:19,634 | INFO     | **************************************
[2025-06-05 07:29:37] 2025-06-05 11:29:19,634 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:29:37] 2025-06-05 11:29:19,634 | INFO     | **************************************
[2025-06-05 07:29:37] 2025-06-05 11:29:19,634 | INFO     | 
[2025-06-05 07:29:37] 2025-06-05 11:29:19,651 | INFO     | architecture information:
[2025-06-05 07:29:37] 2025-06-05 11:29:19,651 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:29:37] 2025-06-05 11:29:19,667 | INFO     | cat /etc/os-release:
[2025-06-05 07:29:37] NAME="CentOS Linux"
[2025-06-05 07:29:37] VERSION="7 (Core)"
[2025-06-05 07:29:37] ID="centos"
[2025-06-05 07:29:37] ID_LIKE="rhel fedora"
[2025-06-05 07:29:37] VERSION_ID="7"
[2025-06-05 07:29:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:29:37] ANSI_COLOR="0;31"
[2025-06-05 07:29:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:29:37] HOME_URL="https://www.centos.org/"
[2025-06-05 07:29:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:29:37] 
[2025-06-05 07:29:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:29:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:29:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:29:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:29:37] 
[2025-06-05 07:29:37] 2025-06-05 11:29:19,668 | INFO     | **************************************
[2025-06-05 07:29:37] 2025-06-05 11:29:20,170 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | INFO     | sufficient remaining disk space (96602161152 B)
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | INFO     | update_server=False
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:29:37] 2025-06-05 11:29:20,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:29:37] 2025-06-05 11:29:20,190 | INFO     | aborting loop
[2025-06-05 07:29:37] 2025-06-05 11:29:20,190 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 07:29:37] 2025-06-05 11:29:20,190 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:29:37] 2025-06-05 11:29:20,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:29:37] 2025-06-05 11:29:20,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:29:37] 2025-06-05 11:29:20,638 | INFO     | all data control threads have been joined
[2025-06-05 07:29:37] 2025-06-05 11:29:20,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:29:37] 2025-06-05 11:29:21,194 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:21,195 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:21,541 | INFO     | all job control threads have been joined
[2025-06-05 07:29:37] 2025-06-05 11:29:21,546 | INFO     | all payload control threads have been joined
[2025-06-05 07:29:37] 2025-06-05 11:29:21,643 | INFO     | [data] control thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:21,666 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:21,689 | INFO     | [job] validate thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,212 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:29:37] 2025-06-05 11:29:22,240 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,253 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,518 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,546 | INFO     | [job] control thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,550 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,551 | INFO     | [payload] control thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,691 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:22,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:29:37] 2025-06-05 11:29:23,906 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:26,241 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:30,450 | INFO     | job.realtimelogging is not enabled
[2025-06-05 07:29:37] 2025-06-05 11:29:31,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:29:37] 2025-06-05 11:29:31,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731287160640)>', '<ExcThread(monitor, started 139731006359296)>']
[2025-06-05 07:29:37] 2025-06-05 11:29:32,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:29:37] 2025-06-05 11:29:32,251 | INFO     | [monitor] control thread has ended
[2025-06-05 07:29:37] 2025-06-05 11:29:36,826 | INFO     | all workflow threads have been joined
[2025-06-05 07:29:37] 2025-06-05 11:29:36,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:29:37] 2025-06-05 11:29:36,827 | INFO     | traces error code: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:36,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:29:37] 2025-06-05 11:29:36,985 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:29:37] 2025-06-05 11:29:36,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:29:37] 2025-06-05 11:29:36,991 [wrapper] pilotpid: 998534
[2025-06-05 07:29:37] 2025-06-05 11:29:36,994 [wrapper] Pilot exit status: 0
[2025-06-05 07:29:37] 2025-06-05 11:29:37,005 [wrapper] pandaids: 6668850463
[2025-06-05 07:29:37] 2025-06-05 11:29:37,073 [wrapper] cleanup supervisor_pilot 1738493 998535
[2025-06-05 07:29:37] 2025-06-05 11:29:37,075 [wrapper] Test setup, not cleaning
[2025-06-05 07:29:37] 2025-06-05 11:29:37,079 [wrapper] apfmon messages muted
[2025-06-05 07:29:37] 2025-06-05 11:29:37,081 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:29:37] 2025-06-05 11:29:37,083 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:29:37]  *** Error codes and diagnostics ***
[2025-06-05 07:29:37]     "exeErrorCode": 0,
[2025-06-05 07:29:37]     "exeErrorDiag": "",
[2025-06-05 07:29:37]     "pilotErrorCode": 0,
[2025-06-05 07:29:37]     "pilotErrorDiag": "",
[2025-06-05 07:29:37]  *** Listing of results directory ***
[2025-06-05 07:29:37] total 421176
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas      5111 May 28 15:14 queuedata.json
[2025-06-05 07:29:37] -rwx------. 1 boincer umatlas     37140 May 28 15:15 runpilot2-wrapper.sh
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas    495897 May 28 15:15 pilot3.tar.gz
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas       100 Jun  5 03:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:29:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 03:53 run_atlas
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas       105 Jun  5 03:53 job.xml
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas 226216473 Jun  5 03:53 EVNT.44871834._003475.pool.root.1
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 03:53 start_atlas.sh
[2025-06-05 07:29:37] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 03:53 shared
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 03:53 input.tar.gz
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas         0 Jun  5 03:53 boinc_lockfile
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas      2559 Jun  5 03:53 pandaJob.out
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas    983087 Jun  5 03:54 agis_schedconf.cvmfs.json
[2025-06-05 07:29:37] drwx------. 4 boincer umatlas      4096 Jun  5 03:54 pilot3
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas        95 Jun  5 07:28 pilot_heartbeat.json
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas 198246311 Jun  5 07:28 HITS.44871837._089308.pool.root.1
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas       530 Jun  5 07:28 boinc_task_state.xml
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas      1044 Jun  5 07:29 memory_monitor_summary.json
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas   1598969 Jun  5 07:29 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas    381837 Jun  5 07:29 log.44871837._089308.job.log.tgz.1
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas      6860 Jun  5 07:29 init_data.xml
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas      7732 Jun  5 07:29 heartbeat.json
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas        28 Jun  5 07:29 wrapper_checkpoint.txt
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 07:29 boinc_mmap_file
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas      4548 Jun  5 07:29 pilotlog.txt
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas   1115437 Jun  5 07:29 log.44871837._089308.job.log.1
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas       357 Jun  5 07:29 output.list
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas       620 Jun  5 07:29 runtime_log
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas   1515520 Jun  5 07:29 result.tar.gz
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas       657 Jun  5 07:29 vR4LDmAQbe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3tcKDmIB6Fdn.diag
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas      8670 Jun  5 07:29 runtime_log.err
[2025-06-05 07:29:37] -rw-r--r--. 1 boincer umatlas     21174 Jun  5 07:29 stderr.txt
[2025-06-05 07:29:37] HITS file was successfully produced:
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas 198246311 Jun  5 07:28 shared/HITS.pool.root.1
[2025-06-05 07:29:37]  *** Contents of shared directory: ***
[2025-06-05 07:29:37] total 416516
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas 226216473 Jun  5 03:53 ATLAS.root_0
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 03:53 start_atlas.sh
[2025-06-05 07:29:37] -rw-r--r--. 2 boincer umatlas    508875 Jun  5 03:53 input.tar.gz
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas 198246311 Jun  5 07:28 HITS.pool.root.1
[2025-06-05 07:29:37] -rw-------. 1 boincer umatlas   1515520 Jun  5 07:29 result.tar.gz
07:29:38 (994770): run_atlas exited; CPU time 55690.552208
07:29:38 (994770): called boinc_finish(0)

</stderr_txt>
]]>

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