Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:18:23 (20440): wrapper (7.7.26015): starting
09:18:23 (20440): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 09:18:23] Arguments: --nthreads 8
[2025-06-05 09:18:23] Threads: 8
[2025-06-05 09:18:23] Checking for CVMFS
[2025-06-05 09:18:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 09:18:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 09:18:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 09:18:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 09:18:26] 2.11.2.0 14372 34326 98412 146809 2 16 14329429 25165824 2358 130560 0 17655324 99.826 19908300 2207 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 09:18:26] CVMFS is ok
[2025-06-05 09:18:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:18:26] Checking for apptainer binary...
[2025-06-05 09:18:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 09:18:26] Running /usr/bin/apptainer --version
[2025-06-05 09:18:26] apptainer version 1.3.2-1.el7
[2025-06-05 09:18:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 12:11:25] cg-vwn440.simple-grid.lan
[2025-06-05 12:11:25] apptainer works
[2025-06-05 12:11:25] Set ATHENA_PROC_NUMBER=8
[2025-06-05 12:11:25] Set ATHENA_CORE_NUMBER=8
[2025-06-05 12:11:25] Starting ATLAS job with PandaID=6667580440
[2025-06-05 12:11:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:35:46]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:35:46] 2025-06-05 15:27:34,795 | INFO     | extracted standard info from prmon json
[2025-06-05 17:35:46] 2025-06-05 15:27:34,795 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:35:46] 2025-06-05 15:27:34,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:35:46] 2025-06-05 15:27:34,795 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:35:46] 2025-06-05 15:27:34,795 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:35:46] 2025-06-05 15:27:34,802 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:35:46] 2025-06-05 15:27:34,802 | INFO     | sum of square deviations: 8288713550.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,805 | INFO     | sum of deviations: 55651442651.999985
[2025-06-05 17:35:46] 2025-06-05 15:27:34,806 | INFO     | mean x: 1749128062.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,806 | INFO     | mean y: 2481335.565217391
[2025-06-05 17:35:46] 2025-06-05 15:27:34,806 | INFO     | -- intersect: -11741379692.59118
[2025-06-05 17:35:46] 2025-06-05 15:27:34,806 | INFO     | intersect: -11741379692.59118
[2025-06-05 17:35:46] 2025-06-05 15:27:34,807 | INFO     | chi2: 7.960823405754602
[2025-06-05 17:35:46] 2025-06-05 15:27:34,812 | INFO     | sum of square deviations: 7879803557.5
[2025-06-05 17:35:46] 2025-06-05 15:27:34,815 | INFO     | sum of deviations: 74939493811.99994
[2025-06-05 17:35:46] 2025-06-05 15:27:34,816 | INFO     | mean x: 1749127909.5
[2025-06-05 17:35:46] 2025-06-05 15:27:34,816 | INFO     | mean y: 2488429.034013605
[2025-06-05 17:35:46] 2025-06-05 15:27:34,816 | INFO     | -- intersect: -16632286688.628765
[2025-06-05 17:35:46] 2025-06-05 15:27:34,816 | INFO     | intersect: -16632286688.628765
[2025-06-05 17:35:46] 2025-06-05 15:27:34,817 | INFO     | chi2: 7.25392477789114
[2025-06-05 17:35:46] 2025-06-05 15:27:34,817 | INFO     | current chi2=7.25392477789114 (change=8.87971748440581 %)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,817 | INFO     | right removable region: 293
[2025-06-05 17:35:46] 2025-06-05 15:27:34,818 | INFO     | sum of square deviations: 7879803557.5
[2025-06-05 17:35:46] 2025-06-05 15:27:34,820 | INFO     | sum of deviations: -51117577361.499954
[2025-06-05 17:35:46] 2025-06-05 15:27:34,821 | INFO     | mean x: 1749128214.5
[2025-06-05 17:35:46] 2025-06-05 15:27:34,821 | INFO     | mean y: 2521134.3911564625
[2025-06-05 17:35:46] 2025-06-05 15:27:34,821 | INFO     | -- intersect: 11349402584.853767
[2025-06-05 17:35:46] 2025-06-05 15:27:34,821 | INFO     | intersect: 11349402584.853767
[2025-06-05 17:35:46] 2025-06-05 15:27:34,821 | INFO     | chi2: 2.976064585310671
[2025-06-05 17:35:46] 2025-06-05 15:27:34,822 | INFO     | current chi2=2.976064585310671 (change=62.61612105150608 %)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,822 | INFO     | sum of square deviations: 7484568240.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,825 | INFO     | sum of deviations: -112773718523.99998
[2025-06-05 17:35:46] 2025-06-05 15:27:34,825 | INFO     | mean x: 1749128367.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,825 | INFO     | mean y: 2544831.7162629757
[2025-06-05 17:35:46] 2025-06-05 15:27:34,825 | INFO     | -- intersect: 26357533362.410954
[2025-06-05 17:35:46] 2025-06-05 15:27:34,825 | INFO     | intersect: 26357533362.410954
[2025-06-05 17:35:46] 2025-06-05 15:27:34,826 | INFO     | chi2: 1.0951657357856144
[2025-06-05 17:35:46] 2025-06-05 15:27:34,826 | INFO     | current chi2=1.0951657357856144 (change=63.20087469905194 %)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,833 | INFO     | sum of square deviations: 7102775035.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,836 | INFO     | sum of deviations: -116359589707.49998
[2025-06-05 17:35:46] 2025-06-05 15:27:34,836 | INFO     | mean x: 1749128519.5
[2025-06-05 17:35:46] 2025-06-05 15:27:34,836 | INFO     | mean y: 2546236.9683098593
[2025-06-05 17:35:46] 2025-06-05 15:27:34,836 | INFO     | -- intersect: 28657244699.441418
[2025-06-05 17:35:46] 2025-06-05 15:27:34,836 | INFO     | intersect: 28657244699.441418
[2025-06-05 17:35:46] 2025-06-05 15:27:34,837 | INFO     | chi2: 1.0478524269961291
[2025-06-05 17:35:46] 2025-06-05 15:27:34,837 | INFO     | current chi2=1.0478524269961291 (change=4.320196226331458 %)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,837 | INFO     | left removable region: 30
[2025-06-05 17:35:46] 2025-06-05 15:27:34,837 | INFO     | sum of square deviations: 5640782972.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,839 | INFO     | sum of deviations: -72092115377.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,840 | INFO     | mean x: 1749128794.0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,840 | INFO     | mean y: 2544843.3155893534
[2025-06-05 17:35:46] 2025-06-05 15:27:34,840 | INFO     | -- intersect: 22357312869.707382
[2025-06-05 17:35:46] 2025-06-05 15:27:34,840 | INFO     | intersect: 22357312869.707382
[2025-06-05 17:35:46] 2025-06-05 15:27:34,840 | INFO     | chi2: 0.2507013949684766
[2025-06-05 17:35:46] 2025-06-05 15:27:34,841 | INFO     | -- intersect: 22357312869.707382
[2025-06-05 17:35:46] 2025-06-05 15:27:34,841 | INFO     | current memory leak: -12.78 B/s (using 263 data points, chi2=0.25)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | ..............................
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | . Timing measurements:
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | . get job = 0 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | . initial setup = 12 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | . payload setup = 155 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,842 | INFO     | . stage-in = 0 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,843 | INFO     | . payload execution = 18352 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,843 | INFO     | . stage-out = 4 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,843 | INFO     | . log creation = 1 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,843 | INFO     | ..............................
[2025-06-05 17:35:46] 2025-06-05 15:27:34,973 | INFO     | 
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | job summary report
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | --------------------------------------------------
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | PanDA job id: 6667580440
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | task id: 44871837
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | errors: (none)
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | pilot state: finished 
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | transexitcode: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | exeerrorcode: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,974 | INFO     | exeerrordiag: 
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | exitcode: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | exitmsg: OK
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | cpuconsumptiontime: 69525 s
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | nevents: 400
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | neventsw: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | pid: 4500
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | pgrp: 4500
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | corecount: 8
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | event service: False
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | sizes: {0: 2396564, 1: 2397250, 2: 2397449, 12: 2397449, 23: 2397477, 34: 2397505, 45: 2397661, 55: 2397689, 66: 2397717, 77: 2397745, 88: 2397801, 92: 2398315, 98
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | --------------------------------------------------
[2025-06-05 17:35:46] 2025-06-05 15:27:34,975 | INFO     | 
[2025-06-05 17:35:46] 2025-06-05 15:27:34,976 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-06-05 17:35:46] 2025-06-05 15:27:35,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | job 6667580440 has completed (purged errors)
[2025-06-05 17:35:46] 2025-06-05 15:27:35,173 | INFO     | overall cleanup function is called
[2025-06-05 17:35:46] 2025-06-05 15:27:36,183 | INFO     | --- collectZombieJob: --- 10, [4500]
[2025-06-05 17:35:46] 2025-06-05 15:27:36,184 | INFO     | zombie collector waiting for pid 4500
[2025-06-05 17:35:46] 2025-06-05 15:27:36,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:35:46] 2025-06-05 15:27:36,184 | INFO     | collected zombie processes
[2025-06-05 17:35:46] 2025-06-05 15:27:36,184 | INFO     | will attempt to kill all subprocesses of pid=4500
[2025-06-05 17:35:46] 2025-06-05 15:27:36,329 | INFO     | process IDs to be killed: [4500] (in reverse order)
[2025-06-05 17:35:46] 2025-06-05 15:27:36,911 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:35:46] 2025-06-05 15:27:36,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:35:46] 2025-06-05 15:27:36,916 | INFO     | did not find any defunct processes belonging to 4500
[2025-06-05 17:35:46] 2025-06-05 15:27:36,919 | INFO     | did not find any defunct processes belonging to 4500
[2025-06-05 17:35:46] 2025-06-05 15:27:36,920 | INFO     | ready for new job
[2025-06-05 17:35:46] 2025-06-05 15:27:36,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:35:46] 2025-06-05 15:27:36,923 | INFO     | **************************************
[2025-06-05 17:35:46] 2025-06-05 15:27:36,923 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:35:46] 2025-06-05 15:27:36,923 | INFO     | **************************************
[2025-06-05 17:35:46] 2025-06-05 15:27:36,923 | INFO     | 
[2025-06-05 17:35:46] 2025-06-05 15:27:36,924 | INFO     | pilot is running in a VM
[2025-06-05 17:35:46] 2025-06-05 15:27:36,924 | INFO     | architecture information:
[2025-06-05 17:35:46] 2025-06-05 15:27:36,940 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:35:46] 2025-06-05 15:27:37,243 | INFO     | cat /etc/os-release:
[2025-06-05 17:35:46] NAME="CentOS Linux"
[2025-06-05 17:35:46] VERSION="7 (Core)"
[2025-06-05 17:35:46] ID="centos"
[2025-06-05 17:35:46] ID_LIKE="rhel fedora"
[2025-06-05 17:35:46] VERSION_ID="7"
[2025-06-05 17:35:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:35:46] ANSI_COLOR="0;31"
[2025-06-05 17:35:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:35:46] HOME_URL="https://www.centos.org/"
[2025-06-05 17:35:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:35:46] 
[2025-06-05 17:35:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:35:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:35:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:35:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:35:46] 
[2025-06-05 17:35:46] 2025-06-05 15:27:37,243 | INFO     | **************************************
[2025-06-05 17:35:46] 2025-06-05 15:27:37,747 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-06-05 17:35:46] 2025-06-05 15:27:37,951 | INFO     | sufficient remaining disk space (497253613568 B)
[2025-06-05 17:35:46] 2025-06-05 15:27:37,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:35:46] 2025-06-05 15:27:37,952 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:35:46] 2025-06-05 15:27:37,952 | INFO     | update_server=False
[2025-06-05 17:35:46] 2025-06-05 15:27:37,952 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:35:46] 2025-06-05 15:27:37,952 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 17:35:46] 2025-06-05 15:27:37,953 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:35:46] 2025-06-05 15:27:37,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:35:46] 2025-06-05 15:27:37,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:35:46] 2025-06-05 15:27:37,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:35:46] 2025-06-05 15:27:37,955 | INFO     | aborting loop
[2025-06-05 17:35:46] 2025-06-05 15:27:37,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:35:46] 2025-06-05 15:27:38,181 | INFO     | all payload control threads have been joined
[2025-06-05 17:35:46] 2025-06-05 15:27:38,949 | INFO     | all data control threads have been joined
[2025-06-05 17:35:46] 2025-06-05 15:27:38,958 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:38,960 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:35:46] 2025-06-05 15:27:39,081 | INFO     | [job] validate thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,187 | INFO     | [payload] control thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,211 | INFO     | all job control threads have been joined
[2025-06-05 17:35:46] 2025-06-05 15:27:39,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,405 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,572 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,603 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,955 | INFO     | [data] control thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:39,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:35:46] 2025-06-05 15:27:40,181 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:40,182 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:40,217 | INFO     | [job] control thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:40,291 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:40,995 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:41,012 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:41,966 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:35:46] 2025-06-05 15:27:43,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139921527420736)>', '<ExcThread(monitor, started 139921083844352)>']
[2025-06-05 17:35:46] 2025-06-05 15:27:43,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:35:46] 2025-06-05 15:27:43,993 | INFO     | [monitor] control thread has ended
[2025-06-05 17:35:46] 2025-06-05 15:27:48,745 | INFO     | all workflow threads have been joined
[2025-06-05 17:35:46] 2025-06-05 15:27:48,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:35:46] 2025-06-05 15:27:48,746 | INFO     | traces error code: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:48,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:35:46] 2025-06-05 15:27:49,150 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:35:46] 2025-06-05 15:27:49,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:35:46] 2025-06-05 15:27:49,290 [wrapper] pilotpid: 26303
[2025-06-05 17:35:46] 2025-06-05 15:27:49,372 [wrapper] Pilot exit status: 0
[2025-06-05 17:35:46] 2025-06-05 15:27:49,862 [wrapper] pandaids: 6667580440
[2025-06-05 17:35:46] 2025-06-05 15:27:50,680 [wrapper] cleanup supervisor_pilot 29571 26304
[2025-06-05 17:35:46] 2025-06-05 15:27:50,723 [wrapper] Test setup, not cleaning
[2025-06-05 17:35:46] 2025-06-05 15:27:50,774 [wrapper] apfmon messages muted
[2025-06-05 17:35:46] 2025-06-05 15:27:50,831 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:35:46] 2025-06-05 15:27:50,899 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:35:46]  *** Error codes and diagnostics ***
[2025-06-05 17:35:46]     "exeErrorCode": 0,
[2025-06-05 17:35:46]     "exeErrorDiag": "",
[2025-06-05 17:35:46]     "pilotErrorCode": 0,
[2025-06-05 17:35:46]     "pilotErrorDiag": "",
[2025-06-05 17:35:46]  *** Listing of results directory ***
[2025-06-05 17:35:46] total 416048
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc    495897 May 27 22:43 pilot3.tar.gz
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc      5111 May 27 22:45 queuedata.json
[2025-06-05 17:35:46] -rwx------. 1 boinc boinc     37140 May 27 22:47 runpilot2-wrapper.sh
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc       100 Jun  5 09:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:35:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 09:18 run_atlas
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc       105 Jun  5 09:18 job.xml
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc 224168577 Jun  5 09:18 EVNT.44871834._002872.pool.root.1
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc      6393 Jun  5 09:18 init_data.xml
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 09:18 start_atlas.sh
[2025-06-05 17:35:46] drwxrwx--x. 2 boinc boinc        68 Jun  5 09:18 shared
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc    508874 Jun  5 09:18 input.tar.gz
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc         0 Jun  5 09:18 boinc_lockfile
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc      2559 Jun  5 12:11 pandaJob.out
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc    983289 Jun  5 12:14 agis_schedconf.cvmfs.json
[2025-06-05 17:35:46] drwx------. 4 boinc boinc      4096 Jun  5 12:14 pilot3
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc 194030882 Jun  5 17:24 HITS.44871837._073224.pool.root.1
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc       531 Jun  5 17:25 boinc_task_state.xml
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc      1016 Jun  5 17:26 memory_monitor_summary.json
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc   1598969 Jun  5 17:26 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc    422149 Jun  5 17:26 log.44871837._073224.job.log.tgz.1
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc        95 Jun  5 17:26 pilot_heartbeat.json
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc      7695 Jun  5 17:27 heartbeat.json
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc      4540 Jun  5 17:27 pilotlog.txt
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc   1586909 Jun  5 17:27 log.44871837._073224.job.log.1
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc       357 Jun  5 17:27 output.list
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc       620 Jun  5 17:27 runtime_log
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc   2027520 Jun  5 17:27 result.tar.gz
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc      8673 Jun  5 17:27 runtime_log.err
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc       657 Jun  5 17:27 AiVMDmtNGe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvMaKDm5jSaMn.diag
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc      8192 Jun  5 17:35 boinc_mmap_file
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc        28 Jun  5 17:35 wrapper_checkpoint.txt
[2025-06-05 17:35:46] -rw-r--r--. 1 boinc boinc     20515 Jun  5 17:35 stderr.txt
[2025-06-05 17:35:46] HITS file was successfully produced:
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc 194030882 Jun  5 17:24 shared/HITS.pool.root.1
[2025-06-05 17:35:46]  *** Contents of shared directory: ***
[2025-06-05 17:35:46] total 410896
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc 224168577 Jun  5 09:18 ATLAS.root_0
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc     15093 Jun  5 09:18 start_atlas.sh
[2025-06-05 17:35:46] -rw-r--r--. 2 boinc boinc    508874 Jun  5 09:18 input.tar.gz
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc 194030882 Jun  5 17:24 HITS.pool.root.1
[2025-06-05 17:35:46] -rw-------. 1 boinc boinc   2027520 Jun  5 17:27 result.tar.gz
17:35:48 (20440): run_atlas exited; CPU time 69764.274486
17:35:48 (20440): called boinc_finish(0)

</stderr_txt>
]]>

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