Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:38:11 (25905): wrapper (7.7.26015): starting
00:38:11 (25905): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 00:38:11] Arguments: --nthreads 12
[2025-06-05 00:38:11] Threads: 12
[2025-06-05 00:38:11] Checking for CVMFS
[2025-06-05 00:38:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:38:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:38:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:38:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:38:11] 2.11.2.0 2925 36652 87632 146806 3 1 15089926 20275201 1 130560 0 15975868 99.986 6285138 7529 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 00:38:11] CVMFS is ok
[2025-06-05 00:38:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:38:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:38:11] Further information can be found at the LHC@home message board.
[2025-06-05 00:38:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:38:11] Checking for apptainer binary...
[2025-06-05 00:38:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:38:11] Running /usr/bin/apptainer --version
[2025-06-05 00:38:11] apptainer version 1.3.2-1.el7
[2025-06-05 00:38:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:38:13] c-205-10.aglt2.org
[2025-06-05 00:38:13] apptainer works
[2025-06-05 00:38:13] Set ATHENA_PROC_NUMBER=12
[2025-06-05 00:38:13] Set ATHENA_CORE_NUMBER=12
[2025-06-05 00:38:13] Starting ATLAS job with PandaID=6680392103
[2025-06-05 00:38:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:43:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:43:20]  lfn=log.45006595._057052.job.log.tgz.1
[2025-06-05 01:43:20]  mtime=0
[2025-06-05 01:43:20]  protocol_id=None
[2025-06-05 01:43:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 01:43:20]  replicas=None
[2025-06-05 01:43:20]  scope=mc23_13p6TeV
[2025-06-05 01:43:20]  status=None
[2025-06-05 01:43:20]  status_code=0
[2025-06-05 01:43:20]  storage_token=
[2025-06-05 01:43:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6680392103/log.45006595._057052.job.log.tgz.1
[2025-06-05 01:43:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/63/log.45006595._057052.job.log.tgz.1
[2025-06-05 01:43:20]  workdir=None
[2025-06-05 01:43:20] ]
[2025-06-05 01:43:20] 2025-06-05 05:42:52,530 | INFO     | transferring file log.45006595._057052.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6680392103/log.45006595._057052.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 01:43:20] 2025-06-05 05:42:52,530 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6680392103/log.45006595._057052.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057052.job
[2025-06-05 01:43:20] 2025-06-05 05:42:52,551 | INFO     | adding to output.list: log.45006595._057052.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/63/log.45006595._057052.job.log.tg
[2025-06-05 01:43:20] 2025-06-05 05:42:52,552 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 01:43:20] 2025-06-05 05:42:52,553 | INFO     | summary of transferred files:
[2025-06-05 01:43:20] 2025-06-05 05:42:52,553 | INFO     |  -- lfn=log.45006595._057052.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 01:43:20] 2025-06-05 05:42:52,553 | INFO     | stage-out finished correctly
[2025-06-05 01:43:20] 2025-06-05 05:42:53,662 | INFO     | monitor loop #290: job 0:6680392103 is in state 'finished'
[2025-06-05 01:43:20] 2025-06-05 05:42:53,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:43:20] 2025-06-05 05:42:55,045 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 01:43:20] 2025-06-05 05:42:56,165 | INFO     | monitor loop #291: job 0:6680392103 is in state 'finished'
[2025-06-05 01:43:20] 2025-06-05 05:42:56,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:43:20] 2025-06-05 05:42:56,869 | INFO     | job 6680392103 has state=finished
[2025-06-05 01:43:20] 2025-06-05 05:42:56,869 | INFO     | preparing for final server update for job 6680392103 in state='finished'
[2025-06-05 01:43:20] 2025-06-05 05:42:56,869 | INFO     | this job has now completed (state=finished)
[2025-06-05 01:43:20] 2025-06-05 05:42:56,870 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 01:43:20] 2025-06-05 05:42:56,870 | INFO     | log transfer has been attempted: DONE
[2025-06-05 01:43:20] 2025-06-05 05:42:56,870 | INFO     | job 6680392103 has finished - writing final server update
[2025-06-05 01:43:20] 2025-06-05 05:42:56,870 | INFO     | total number of processed events: 400 (read)
[2025-06-05 01:43:20] 2025-06-05 05:42:56,872 | INFO     | executing command: lscpu
[2025-06-05 01:43:20] 2025-06-05 05:42:56,898 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:43:20] 2025-06-05 05:42:58,668 | INFO     | monitor loop #292: job 0:6680392103 is in state 'finished'
[2025-06-05 01:43:20] 2025-06-05 05:42:58,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,171 | INFO     | monitor loop #293: job 0:6680392103 is in state 'finished'
[2025-06-05 01:43:20] 2025-06-05 05:43:01,191 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,634 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 01:43:20] 2025-06-05 05:43:01,635 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680392103/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,636 | INFO     | extracted standard info from prmon json
[2025-06-05 01:43:20] 2025-06-05 05:43:01,636 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:43:20] 2025-06-05 05:43:01,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:43:20] 2025-06-05 05:43:01,636 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:43:20] 2025-06-05 05:43:01,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:43:20] 2025-06-05 05:43:01,638 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | sum of square deviations: 54438230.0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | sum of deviations: -6224657037.999999
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | mean x: 1749100322.5
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | mean y: 2813430.0714285714
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | -- intersect: 200001043214.86963
[2025-06-05 01:43:20] 2025-06-05 05:43:01,639 | INFO     | intersect: 200001043214.86963
[2025-06-05 01:43:20] 2025-06-05 05:43:01,640 | INFO     | chi2: 0.043685301820099144
[2025-06-05 01:43:20] 2025-06-05 05:43:01,640 | INFO     | -- intersect: 200001043214.86963
[2025-06-05 01:43:20] 2025-06-05 05:43:01,640 | INFO     | current memory leak: -114.34 B/s (using 56 data points, chi2=0.04)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,640 | INFO     | ..............................
[2025-06-05 01:43:20] 2025-06-05 05:43:01,640 | INFO     | . Timing measurements:
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . get job = 0 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . initial setup = 2 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . payload setup = 10 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . stage-in = 0 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . payload execution = 3832 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . stage-out = 0 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | . log creation = 0 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,641 | INFO     | ..............................
[2025-06-05 01:43:20] 2025-06-05 05:43:01,726 | INFO     | 
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | job summary report
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | --------------------------------------------------
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | PanDA job id: 6680392103
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | task id: 45006595
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | errors: (none)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,727 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | pilot state: finished 
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | transexitcode: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | exeerrorcode: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | exeerrordiag: 
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | exitcode: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,728 | INFO     | exitmsg: OK
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | cpuconsumptiontime: 41932 s
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | nevents: 400
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | neventsw: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | pid: 3646
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | pgrp: 3646
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | corecount: 12
[2025-06-05 01:43:20] 2025-06-05 05:43:01,729 | INFO     | event service: False
[2025-06-05 01:43:20] 2025-06-05 05:43:01,730 | INFO     | sizes: {0: 2397168, 1: 2397367, 6: 2397573, 12: 2397601, 3846: 2423223, 3849: 2432192, 3851: 2432376, 3858: 2432546}
[2025-06-05 01:43:20] 2025-06-05 05:43:01,730 | INFO     | --------------------------------------------------
[2025-06-05 01:43:20] 2025-06-05 05:43:01,730 | INFO     | 
[2025-06-05 01:43:20] 2025-06-05 05:43:01,730 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 01:43:20] 2025-06-05 05:43:01,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,753 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:43:20] 2025-06-05 05:43:01,757 | INFO     | job 6680392103 has completed (purged errors)
[2025-06-05 01:43:20] 2025-06-05 05:43:01,757 | INFO     | overall cleanup function is called
[2025-06-05 01:43:20] 2025-06-05 05:43:02,763 | INFO     | --- collectZombieJob: --- 10, [3646]
[2025-06-05 01:43:20] 2025-06-05 05:43:02,763 | INFO     | zombie collector waiting for pid 3646
[2025-06-05 01:43:20] 2025-06-05 05:43:02,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:43:20] 2025-06-05 05:43:02,763 | INFO     | collected zombie processes
[2025-06-05 01:43:20] 2025-06-05 05:43:02,763 | INFO     | will attempt to kill all subprocesses of pid=3646
[2025-06-05 01:43:20] 2025-06-05 05:43:02,860 | INFO     | process IDs to be killed: [3646] (in reverse order)
[2025-06-05 01:43:20] 2025-06-05 05:43:02,914 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:43:20] 2025-06-05 05:43:02,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:43:20] 2025-06-05 05:43:02,917 | INFO     | did not find any defunct processes belonging to 3646
[2025-06-05 01:43:20] 2025-06-05 05:43:02,919 | INFO     | did not find any defunct processes belonging to 3646
[2025-06-05 01:43:20] 2025-06-05 05:43:02,919 | INFO     | ready for new job
[2025-06-05 01:43:20] 2025-06-05 05:43:02,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:43:20] 2025-06-05 05:43:02,921 | INFO     | **************************************
[2025-06-05 01:43:20] 2025-06-05 05:43:02,921 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:43:20] 2025-06-05 05:43:02,921 | INFO     | **************************************
[2025-06-05 01:43:20] 2025-06-05 05:43:02,921 | INFO     | 
[2025-06-05 01:43:20] 2025-06-05 05:43:02,922 | INFO     | architecture information:
[2025-06-05 01:43:20] 2025-06-05 05:43:02,922 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:43:20] 2025-06-05 05:43:02,937 | INFO     | cat /etc/os-release:
[2025-06-05 01:43:20] NAME="CentOS Linux"
[2025-06-05 01:43:20] VERSION="7 (Core)"
[2025-06-05 01:43:20] ID="centos"
[2025-06-05 01:43:20] ID_LIKE="rhel fedora"
[2025-06-05 01:43:20] VERSION_ID="7"
[2025-06-05 01:43:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:43:20] ANSI_COLOR="0;31"
[2025-06-05 01:43:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:43:20] HOME_URL="https://www.centos.org/"
[2025-06-05 01:43:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:43:20] 
[2025-06-05 01:43:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:43:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:43:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:43:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:43:20] 
[2025-06-05 01:43:20] 2025-06-05 05:43:02,937 | INFO     | **************************************
[2025-06-05 01:43:20] 2025-06-05 05:43:03,440 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 01:43:20] 2025-06-05 05:43:03,458 | INFO     | sufficient remaining disk space (29414653952 B)
[2025-06-05 01:43:20] 2025-06-05 05:43:03,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:43:20] 2025-06-05 05:43:03,459 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:43:20] 2025-06-05 05:43:03,459 | INFO     | update_server=False
[2025-06-05 01:43:20] 2025-06-05 05:43:03,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:43:20] 2025-06-05 05:43:03,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:43:20] 2025-06-05 05:43:03,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:43:20] 2025-06-05 05:43:03,543 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:43:20] 2025-06-05 05:43:03,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:43:20] 2025-06-05 05:43:03,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:43:20] 2025-06-05 05:43:03,695 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 01:43:20] 2025-06-05 05:43:03,695 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 01:43:20] 2025-06-05 05:43:03,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:43:20] 2025-06-05 05:43:03,695 | INFO     | will abort loop
[2025-06-05 01:43:20] 2025-06-05 05:43:04,131 | INFO     | all job control threads have been joined
[2025-06-05 01:43:20] 2025-06-05 05:43:04,464 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:04,465 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:04,484 | INFO     | all payload control threads have been joined
[2025-06-05 01:43:20] 2025-06-05 05:43:04,517 | INFO     | all data control threads have been joined
[2025-06-05 01:43:20] 2025-06-05 05:43:04,700 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:04,802 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:04,852 | INFO     | [job] validate thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,136 | INFO     | [job] control thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,435 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,438 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,465 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,489 | INFO     | [payload] control thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,520 | INFO     | [data] control thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:43:20] 2025-06-05 05:43:05,809 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,820 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:05,872 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:09,640 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:13,751 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:43:20] 2025-06-05 05:43:14,757 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:43:20] 2025-06-05 05:43:14,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748588242752)>', '<ExcThread(monitor, started 139747699717888)>']
[2025-06-05 01:43:20] 2025-06-05 05:43:15,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:43:20] 2025-06-05 05:43:15,591 | INFO     | [monitor] control thread has ended
[2025-06-05 01:43:20] 2025-06-05 05:43:19,895 | INFO     | all workflow threads have been joined
[2025-06-05 01:43:20] 2025-06-05 05:43:19,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:43:20] 2025-06-05 05:43:19,900 | INFO     | traces error code: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:19,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:43:20] 2025-06-05 05:43:19,987 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:43:20] 2025-06-05 05:43:19,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:43:20] 2025-06-05 05:43:19,994 [wrapper] pilotpid: 29503
[2025-06-05 01:43:20] 2025-06-05 05:43:19,997 [wrapper] Pilot exit status: 0
[2025-06-05 01:43:20] 2025-06-05 05:43:20,013 [wrapper] pandaids: 6680392103
[2025-06-05 01:43:20] 2025-06-05 05:43:20,052 [wrapper] cleanup supervisor_pilot 17575 29504
[2025-06-05 01:43:20] 2025-06-05 05:43:20,056 [wrapper] Test setup, not cleaning
[2025-06-05 01:43:20] 2025-06-05 05:43:20,060 [wrapper] apfmon messages muted
[2025-06-05 01:43:20] 2025-06-05 05:43:20,064 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:43:20] 2025-06-05 05:43:20,068 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:43:20]  *** Error codes and diagnostics ***
[2025-06-05 01:43:20]     "exeErrorCode": 0,
[2025-06-05 01:43:20]     "exeErrorDiag": "",
[2025-06-05 01:43:20]     "pilotErrorCode": 0,
[2025-06-05 01:43:20]     "pilotErrorDiag": "",
[2025-06-05 01:43:20]  *** Listing of results directory ***
[2025-06-05 01:43:20] total 395364
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 23:51 pilot3.tar.gz
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas      5111 Jun  5 00:33 queuedata.json
[2025-06-05 01:43:20] -rwx------ 1 boincer umatlas     37140 Jun  5 00:37 runpilot2-wrapper.sh
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas       100 Jun  5 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:43:20] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 00:38 run_atlas
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas       105 Jun  5 00:38 job.xml
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas 216091767 Jun  5 00:38 EVNT.45006593._000915.pool.root.1
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:38 start_atlas.sh
[2025-06-05 01:43:20] drwxrwx--x 2 boincer umatlas      4096 Jun  5 00:38 shared
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas    508890 Jun  5 00:38 input.tar.gz
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas         0 Jun  5 00:38 boinc_lockfile
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas      2523 Jun  5 00:38 pandaJob.out
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas    987109 Jun  5 00:38 agis_schedconf.cvmfs.json
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas   1598969 Jun  5 00:38 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:43:20] drwx------ 4 boincer umatlas      4096 Jun  5 00:38 pilot3
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas      5867 Jun  5 01:40 init_data.xml
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas        95 Jun  5 01:42 pilot_heartbeat.json
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas 183430979 Jun  5 01:42 HITS.45006595._057052.pool.root.1
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas       529 Jun  5 01:42 boinc_task_state.xml
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas      1047 Jun  5 01:42 memory_monitor_summary.json
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas    371733 Jun  5 01:42 log.45006595._057052.job.log.tgz.1
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas      7751 Jun  5 01:43 heartbeat.json
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas        27 Jun  5 01:43 wrapper_checkpoint.txt
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 01:43 boinc_mmap_file
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas      4611 Jun  5 01:43 pilotlog.txt
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas    379204 Jun  5 01:43 log.45006595._057052.job.log.1
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas       357 Jun  5 01:43 output.list
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas       620 Jun  5 01:43 runtime_log
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas    768000 Jun  5 01:43 result.tar.gz
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 01:43 runtime_log.err
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas       659 Jun  5 01:43 1WcLDmRXHh7n9Rq4apOajLDm4fhM0noT9bVof3QYDms4aKDmxokJNn.diag
[2025-06-05 01:43:20] -rw-r--r-- 1 boincer umatlas     21530 Jun  5 01:43 stderr.txt
[2025-06-05 01:43:20] HITS file was successfully produced:
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas 183430979 Jun  5 01:42 shared/HITS.pool.root.1
[2025-06-05 01:43:20]  *** Contents of shared directory: ***
[2025-06-05 01:43:20] total 391436
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas 216091767 Jun  5 00:38 ATLAS.root_0
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:38 start_atlas.sh
[2025-06-05 01:43:20] -rw-r--r-- 2 boincer umatlas    508890 Jun  5 00:38 input.tar.gz
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas 183430979 Jun  5 01:42 HITS.pool.root.1
[2025-06-05 01:43:20] -rw------- 1 boincer umatlas    768000 Jun  5 01:43 result.tar.gz
01:43:22 (25905): run_atlas exited; CPU time 41847.658514
01:43:22 (25905): called boinc_finish(0)

</stderr_txt>
]]>

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