Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:18:40 (4878): wrapper (7.7.26015): starting
23:18:40 (4878): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 23:18:40] Arguments: --nthreads 12
[2025-06-04 23:18:40] Threads: 12
[2025-06-04 23:18:40] Checking for CVMFS
[2025-06-04 23:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:18:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:18:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:18:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:18:43] 2.10.0.0 5093 0 28436 146806 3 1 15252028 16777216 0 130560 0 0 0.000 1290 1314 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-06-04 23:18:43] CVMFS is ok
[2025-06-04 23:18:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:18:43] Checking for apptainer binary...
[2025-06-04 23:18:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:18:43] Running /usr/bin/apptainer --version
[2025-06-04 23:18:43] apptainer version 1.3.6-150600.4.9.1
[2025-06-04 23:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:18:43] boinc-runner
[2025-06-04 23:18:43] apptainer works
[2025-06-04 23:18:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 23:18:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 23:18:43] Starting ATLAS job with PandaID=6667667512
[2025-06-04 23:18:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:54:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:54:59]  status_code=0
[2025-06-04 23:54:59]  storage_token=
[2025-06-04 23:54:59]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6667667512/log.44871837._074424.job.log.tgz.1
[2025-06-04 23:54:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/36/log.44871837._074424.job.log.tgz.1
[2025-06-04 23:54:59]  workdir=None
[2025-06-04 23:54:59] ]
[2025-06-04 23:54:59] 2025-06-05 04:54:35,656 | INFO     | transferring file log.44871837._074424.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/log.44871837._074424.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-04 23:54:59] 2025-06-05 04:54:35,656 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/log.44871837._074424.job.log.tgz.1 /var/lib/boinc/slots/1/log.44871837._074424.job
[2025-06-04 23:54:59] 2025-06-05 04:54:35,667 | INFO     | adding to output.list: log.44871837._074424.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/36/log.44871837._074424.job.log.tg
[2025-06-04 23:54:59] 2025-06-05 04:54:35,668 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 23:54:59] 2025-06-05 04:54:35,668 | INFO     | summary of transferred files:
[2025-06-04 23:54:59] 2025-06-05 04:54:35,668 | INFO     |  -- lfn=log.44871837._074424.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 23:54:59] 2025-06-05 04:54:35,668 | INFO     | stage-out finished correctly
[2025-06-04 23:54:59] 2025-06-05 04:54:35,895 | WARNING  | process 16348 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 23:54:59] 2025-06-05 04:54:35,895 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,895 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,896 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3920244 B
[2025-06-04 23:54:59] 2025-06-05 04:54:35,896 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15777 B
[2025-06-04 23:54:59] 2025-06-05 04:54:35,896 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-04 23:54:59] 2025-06-05 04:54:35,902 | INFO     | sufficient remaining disk space (3892152631296 B)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,902 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,902 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6667667512: 4200739 B (within 2537553920 B limit)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,902 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6667667512/HITS.44871837._074424.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,902 | INFO     | total size of present files: 0 B (workdir size: 4200739 B)
[2025-06-04 23:54:59] 2025-06-05 04:54:35,903 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/HITS.44871837._074424.pool.root.1 since it does not exist
[2025-06-04 23:54:59] 2025-06-05 04:54:35,934 | INFO     | number of running child processes to parent process 16348: 1
[2025-06-04 23:54:59] 2025-06-05 04:54:35,934 | INFO     | maximum number of monitored processes: 6
[2025-06-04 23:54:59] 2025-06-05 04:54:37,782 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 23:54:59] 2025-06-05 04:54:38,050 | INFO     | job 6667667512 has state=finished
[2025-06-04 23:54:59] 2025-06-05 04:54:38,050 | INFO     | preparing for final server update for job 6667667512 in state='finished'
[2025-06-04 23:54:59] 2025-06-05 04:54:38,050 | INFO     | this job has now completed (state=finished)
[2025-06-04 23:54:59] 2025-06-05 04:54:38,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 23:54:59] 2025-06-05 04:54:38,050 | INFO     | log transfer has been attempted: DONE
[2025-06-04 23:54:59] 2025-06-05 04:54:38,051 | INFO     | job 6667667512 has finished - writing final server update
[2025-06-04 23:54:59] 2025-06-05 04:54:38,051 | INFO     | total number of processed events: 400 (read)
[2025-06-04 23:54:59] 2025-06-05 04:54:38,054 | INFO     | executing command: lscpu
[2025-06-04 23:54:59] 2025-06-05 04:54:38,069 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 23:54:59] 2025-06-05 04:54:38,437 | INFO     | monitor loop #166: job 0:6667667512 is in state 'finished'
[2025-06-04 23:54:59] 2025-06-05 04:54:38,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,675 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6667667512/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | INFO     | extracted standard info from prmon json
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:54:59] 2025-06-05 04:54:39,676 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | sum of square deviations: 6798267.0
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | sum of deviations: 60708755.50000001
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | mean x: 1749098282.5
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | mean y: 3169133.035714286
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | -- intersect: -15616338011.617832
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | intersect: -15616338011.617832
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | chi2: 2.1516339276558276e-05
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | -- intersect: -15616338011.617832
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | current memory leak: 8.93 B/s (using 28 data points, chi2=0.00)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | ..............................
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . Timing measurements:
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . get job = 0 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . initial setup = 3 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . payload setup = 3 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . stage-in = 0 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . payload execution = 2120 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . stage-out = 0 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | . log creation = 0 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,677 | INFO     | ..............................
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | 
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | job summary report
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | --------------------------------------------------
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | PanDA job id: 6667667512
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | task id: 44871837
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | errors: (none)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | pilot state: finished 
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | transexitcode: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | exeerrorcode: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | exeerrordiag: 
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | exitcode: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | exitmsg: OK
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | cpuconsumptiontime: 22709 s
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | nevents: 400
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | neventsw: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | pid: 16348
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | pgrp: 16348
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | corecount: 12
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | event service: False
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | sizes: {0: 2397392, 1: 2397598, 10: 2397626, 2126: 2422653, 2127: 2431594, 2129: 2431678, 2131: 2431976}
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | --------------------------------------------------
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | 
[2025-06-04 23:54:59] 2025-06-05 04:54:39,704 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | job 6667667512 has completed (purged errors)
[2025-06-04 23:54:59] 2025-06-05 04:54:39,718 | INFO     | overall cleanup function is called
[2025-06-04 23:54:59] 2025-06-05 04:54:40,722 | INFO     | --- collectZombieJob: --- 10, [16348]
[2025-06-04 23:54:59] 2025-06-05 04:54:40,722 | INFO     | zombie collector waiting for pid 16348
[2025-06-04 23:54:59] 2025-06-05 04:54:40,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:54:59] 2025-06-05 04:54:40,722 | INFO     | collected zombie processes
[2025-06-04 23:54:59] 2025-06-05 04:54:40,722 | INFO     | will attempt to kill all subprocesses of pid=16348
[2025-06-04 23:54:59] 2025-06-05 04:54:40,759 | INFO     | process IDs to be killed: [16348] (in reverse order)
[2025-06-04 23:54:59] 2025-06-05 04:54:40,782 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:54:59] 2025-06-05 04:54:40,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:54:59] 2025-06-05 04:54:40,784 | INFO     | did not find any defunct processes belonging to 16348
[2025-06-04 23:54:59] 2025-06-05 04:54:40,785 | INFO     | did not find any defunct processes belonging to 16348
[2025-06-04 23:54:59] 2025-06-05 04:54:40,785 | INFO     | ready for new job
[2025-06-04 23:54:59] 2025-06-05 04:54:40,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:54:59] 2025-06-05 04:54:40,786 | INFO     | **************************************
[2025-06-04 23:54:59] 2025-06-05 04:54:40,786 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:54:59] 2025-06-05 04:54:40,786 | INFO     | **************************************
[2025-06-04 23:54:59] 2025-06-05 04:54:40,786 | INFO     | 
[2025-06-04 23:54:59] 2025-06-05 04:54:40,787 | INFO     | architecture information:
[2025-06-04 23:54:59] 2025-06-05 04:54:40,787 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:54:59] 2025-06-05 04:54:40,793 | INFO     | cat /etc/os-release:
[2025-06-04 23:54:59] NAME="CentOS Linux"
[2025-06-04 23:54:59] VERSION="7 (Core)"
[2025-06-04 23:54:59] ID="centos"
[2025-06-04 23:54:59] ID_LIKE="rhel fedora"
[2025-06-04 23:54:59] VERSION_ID="7"
[2025-06-04 23:54:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:54:59] ANSI_COLOR="0;31"
[2025-06-04 23:54:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:54:59] HOME_URL="https://www.centos.org/"
[2025-06-04 23:54:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:54:59] 
[2025-06-04 23:54:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:54:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:54:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:54:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:54:59] 
[2025-06-04 23:54:59] 2025-06-05 04:54:40,794 | INFO     | **************************************
[2025-06-04 23:54:59] 2025-06-05 04:54:41,294 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | INFO     | sufficient remaining disk space (3892152631296 B)
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | INFO     | update_server=False
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:54:59] 2025-06-05 04:54:41,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:54:59] 2025-06-05 04:54:41,305 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:54:59] 2025-06-05 04:54:41,305 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:54:59] 2025-06-05 04:54:41,305 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:54:59] 2025-06-05 04:54:41,478 | INFO     | all data control threads have been joined
[2025-06-04 23:54:59] 2025-06-05 04:54:41,818 | INFO     | all job control threads have been joined
[2025-06-04 23:54:59] 2025-06-05 04:54:41,930 | INFO     | all payload control threads have been joined
[2025-06-04 23:54:59] 2025-06-05 04:54:41,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:54:59] 2025-06-05 04:54:41,942 | INFO     | aborting loop
[2025-06-04 23:54:59] 2025-06-05 04:54:42,306 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,308 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,310 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,482 | INFO     | [data] control thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,734 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,823 | INFO     | [job] control thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,934 | INFO     | [payload] control thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:42,947 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,306 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,514 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,522 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,642 | INFO     | [job] validate thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,667 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,667 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:43,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:54:59] 2025-06-05 04:54:47,826 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:52,136 | INFO     | job.realtimelogging is not enabled
[2025-06-04 23:54:59] 2025-06-05 04:54:53,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:54:59] 2025-06-05 04:54:54,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796998489920)>', '<ExcThread(monitor, started 139796638832384)>']
[2025-06-04 23:54:59] 2025-06-05 04:54:55,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:54:59] 2025-06-05 04:54:55,358 | INFO     | [monitor] control thread has ended
[2025-06-04 23:54:59] 2025-06-05 04:54:59,722 | INFO     | all workflow threads have been joined
[2025-06-04 23:54:59] 2025-06-05 04:54:59,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:54:59] 2025-06-05 04:54:59,722 | INFO     | traces error code: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:59,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:54:59] 2025-06-05 04:54:59,772 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:54:59] 2025-06-05 04:54:59,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:54:59] 2025-06-05 04:54:59,775 [wrapper] pilotpid: 9343
[2025-06-04 23:54:59] 2025-06-05 04:54:59,776 [wrapper] Pilot exit status: 0
[2025-06-04 23:54:59] 2025-06-05 04:54:59,781 [wrapper] pandaids: 6667667512
[2025-06-04 23:54:59] 2025-06-05 04:54:59,793 [wrapper] cleanup supervisor_pilot  9057 9344
[2025-06-04 23:54:59] 2025-06-05 04:54:59,794 [wrapper] Test setup, not cleaning
[2025-06-04 23:54:59] 2025-06-05 04:54:59,795 [wrapper] apfmon messages muted
[2025-06-04 23:54:59] 2025-06-05 04:54:59,796 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:54:59] 2025-06-05 04:54:59,797 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:54:59]  *** Error codes and diagnostics ***
[2025-06-04 23:54:59]     "exeErrorCode": 0,
[2025-06-04 23:54:59]     "exeErrorDiag": "",
[2025-06-04 23:54:59]     "pilotErrorCode": 0,
[2025-06-04 23:54:59]     "pilotErrorDiag": "",
[2025-06-04 23:54:59]  *** Listing of results directory ***
[2025-06-04 23:54:59] total 414732
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc    495897 May 27 16:39 pilot3.tar.gz
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc      5111 May 27 17:36 queuedata.json
[2025-06-04 23:54:59] -rwx------ 1 boinc boinc     37140 May 27 17:37 runpilot2-wrapper.sh
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc       100 Jun  4 23:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:54:59] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 23:18 run_atlas
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc       105 Jun  4 23:18 job.xml
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc 222852386 Jun  4 23:18 EVNT.44871834._002918.pool.root.1
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:18 start_atlas.sh
[2025-06-04 23:54:59] drwxrwx--x 1 boinc boinc        76 Jun  4 23:18 shared
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc    508881 Jun  4 23:18 input.tar.gz
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc     10044 Jun  4 23:18 init_data.xml
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc         0 Jun  4 23:18 boinc_lockfile
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc      2559 Jun  4 23:18 pandaJob.out
[2025-06-04 23:54:59] -rw------- 1 boinc boinc    987109 Jun  4 23:18 agis_schedconf.cvmfs.json
[2025-06-04 23:54:59] -rw------- 1 boinc boinc   1598969 Jun  4 23:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:54:59] drwx------ 1 boinc boinc       368 Jun  4 23:18 pilot3
[2025-06-04 23:54:59] -rw------- 1 boinc boinc        95 Jun  4 23:54 pilot_heartbeat.json
[2025-06-04 23:54:59] -rw------- 1 boinc boinc 196882218 Jun  4 23:54 HITS.44871837._074424.pool.root.1
[2025-06-04 23:54:59] -rw------- 1 boinc boinc      1012 Jun  4 23:54 memory_monitor_summary.json
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc       529 Jun  4 23:54 boinc_task_state.xml
[2025-06-04 23:54:59] -rw------- 1 boinc boinc    328653 Jun  4 23:54 log.44871837._074424.job.log.tgz.1
[2025-06-04 23:54:59] -rw------- 1 boinc boinc      7666 Jun  4 23:54 heartbeat.json
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc      8192 Jun  4 23:54 boinc_mmap_file
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc        27 Jun  4 23:54 wrapper_checkpoint.txt
[2025-06-04 23:54:59] -rw------- 1 boinc boinc      4550 Jun  4 23:54 pilotlog.txt
[2025-06-04 23:54:59] -rw------- 1 boinc boinc    237617 Jun  4 23:54 log.44871837._074424.job.log.1
[2025-06-04 23:54:59] -rw------- 1 boinc boinc       357 Jun  4 23:54 output.list
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc       620 Jun  4 23:54 runtime_log
[2025-06-04 23:54:59] -rw------- 1 boinc boinc    583680 Jun  4 23:54 result.tar.gz
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc      8683 Jun  4 23:54 runtime_log.err
[2025-06-04 23:54:59] -rw------- 1 boinc boinc       653 Jun  4 23:54 fgXLDmh6He7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpWSKDmUeo4Zm.diag
[2025-06-04 23:54:59] -rw-r--r-- 1 boinc boinc     21964 Jun  4 23:54 stderr.txt
[2025-06-04 23:54:59] HITS file was successfully produced:
[2025-06-04 23:54:59] -rw------- 1 boinc boinc 196882218 Jun  4 23:54 shared/HITS.pool.root.1
[2025-06-04 23:54:59]  *** Contents of shared directory: ***
[2025-06-04 23:54:59] total 410988
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc 222852386 Jun  4 23:18 ATLAS.root_0
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:18 start_atlas.sh
[2025-06-04 23:54:59] -rw-r--r-- 2 boinc boinc    508881 Jun  4 23:18 input.tar.gz
[2025-06-04 23:54:59] -rw------- 1 boinc boinc 196882218 Jun  4 23:54 HITS.pool.root.1
[2025-06-04 23:54:59] -rw------- 1 boinc boinc    583680 Jun  4 23:54 result.tar.gz
23:55:01 (4878): run_atlas exited; CPU time 22714.095621
23:55:01 (4878): called boinc_finish(0)

</stderr_txt>
]]>

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