Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:48 (13258): wrapper (7.7.26015): starting
00:09:48 (13258): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:09:48] Arguments: --nthreads 8
[2025-06-05 00:09:48] Threads: 8
[2025-06-05 00:09:48] Checking for CVMFS
[2025-06-05 00:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:09:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:09:49] 2.11.2.0 96941 13617 298424 146805 0 334 12707475 18432000 15634 130560 0 73614540 99.585 56623991 45529 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 00:09:49] CVMFS is ok
[2025-06-05 00:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:09:49] Further information can be found at the LHC@home message board.
[2025-06-05 00:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:09:49] Checking for apptainer binary...
[2025-06-05 00:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:09:49] Running /usr/bin/apptainer --version
[2025-06-05 00:09:49] apptainer version 1.3.2-1.el7
[2025-06-05 00:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:09:49] c-212-6.aglt2.org
[2025-06-05 00:09:49] apptainer works
[2025-06-05 00:09:49] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:09:49] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:09:49] Starting ATLAS job with PandaID=6667730055
[2025-06-05 00:09:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:00:03 (13258): BOINC client no longer exists - exiting
04:00:03 (13258): timer handler: client dead, exiting
04:13:13 (73191): wrapper (7.7.26015): starting
04:13:13 (73191): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 04:13:13] Arguments: --nthreads 8
[2025-06-05 04:13:13] Threads: 8
[2025-06-05 04:13:13] This job has been restarted, cleaning up previous attempt
[2025-06-05 04:13:14] Checking for CVMFS
[2025-06-05 04:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:13:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:13:15] 2.11.2.0 96941 13861 295288 146811 1 73 13523791 18432001 19569 130560 0 74577281 99.588 56827668 45540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 04:13:15] CVMFS is ok
[2025-06-05 04:13:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:13:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:13:15] Further information can be found at the LHC@home message board.
[2025-06-05 04:13:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:13:15] Checking for apptainer binary...
[2025-06-05 04:13:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:13:15] Running /usr/bin/apptainer --version
[2025-06-05 04:13:15] apptainer version 1.3.2-1.el7
[2025-06-05 04:13:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:13:18] c-212-6.aglt2.org
[2025-06-05 04:13:18] apptainer works
[2025-06-05 04:13:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:13:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:13:18] Starting ATLAS job with PandaID=6667730055
[2025-06-05 04:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:34:03]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:34:03] 2025-06-05 12:33:40,415 | INFO     | extracted standard info from prmon json
[2025-06-05 08:34:03] 2025-06-05 12:33:40,415 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:34:03] 2025-06-05 12:33:40,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:34:03] 2025-06-05 12:33:40,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:34:03] 2025-06-05 12:33:40,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:34:03] 2025-06-05 12:33:40,419 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:34:03] 2025-06-05 12:33:40,420 | INFO     | sum of square deviations: 5081255399.763811
[2025-06-05 08:34:03] 2025-06-05 12:33:40,421 | INFO     | sum of deviations: 62874712956.92125
[2025-06-05 08:34:03] 2025-06-05 12:33:40,421 | INFO     | mean x: 1749119032.5826771
[2025-06-05 08:34:03] 2025-06-05 12:33:40,421 | INFO     | mean y: 2468781.527559055
[2025-06-05 08:34:03] 2025-06-05 12:33:40,422 | INFO     | -- intersect: -21640874929.602478
[2025-06-05 08:34:03] 2025-06-05 12:33:40,422 | INFO     | intersect: -21640874929.602478
[2025-06-05 08:34:03] 2025-06-05 12:33:40,422 | INFO     | chi2: 2.2868299371497547
[2025-06-05 08:34:03] 2025-06-05 12:33:40,422 | INFO     | sum of square deviations: 4787051637.228948
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | sum of deviations: 61474772459.168724
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | mean x: 1749118880.0843372
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | mean y: 2468055.9919678713
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | -- intersect: -22459517588.989292
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | intersect: -22459517588.989292
[2025-06-05 08:34:03] 2025-06-05 12:33:40,424 | INFO     | chi2: 2.2878798345259392
[2025-06-05 08:34:03] 2025-06-05 12:33:40,425 | INFO     | current chi2=2.2878798345259392 (change=-0.04591060135818908 %)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,425 | INFO     | right removable region: 248
[2025-06-05 08:34:03] 2025-06-05 12:33:40,425 | INFO     | sum of square deviations: 4787038827.228948
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | sum of deviations: 6381862350.843364
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | mean x: 1749119185.0843372
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | mean y: 2497907.626506024
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | -- intersect: -2329348203.780371
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | intersect: -2329348203.780371
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | chi2: 0.05768721084071274
[2025-06-05 08:34:03] 2025-06-05 12:33:40,427 | INFO     | current chi2=0.05768721084071274 (change=97.47741579277151 %)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,428 | INFO     | sum of square deviations: 4504403867.192642
[2025-06-05 08:34:03] 2025-06-05 12:33:40,429 | INFO     | sum of deviations: -1385179994.8647544
[2025-06-05 08:34:03] 2025-06-05 12:33:40,429 | INFO     | mean x: 1749119337.5860655
[2025-06-05 08:34:03] 2025-06-05 12:33:40,429 | INFO     | mean y: 2502065.9221311477
[2025-06-05 08:34:03] 2025-06-05 12:33:40,429 | INFO     | -- intersect: 540385698.5825703
[2025-06-05 08:34:03] 2025-06-05 12:33:40,429 | INFO     | intersect: 540385698.5825703
[2025-06-05 08:34:03] 2025-06-05 12:33:40,430 | INFO     | chi2: 0.006741863794140443
[2025-06-05 08:34:03] 2025-06-05 12:33:40,430 | INFO     | current chi2=0.006741863794140443 (change=88.31307027001837 %)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,430 | INFO     | sum of square deviations: 4233132840.3263617
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | sum of deviations: -2762724500.7531376
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | mean x: 1749119490.083682
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | mean y: 2502839.0376569037
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | -- intersect: 1144053423.976651
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | intersect: 1144053423.976651
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | chi2: 0.005364041160701204
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | current chi2=0.005364041160701204 (change=20.436820966877832 %)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,432 | INFO     | left removable region: 30
[2025-06-05 08:34:03] 2025-06-05 12:33:40,433 | INFO     | sum of square deviations: 3212431094.6651497
[2025-06-05 08:34:03] 2025-06-05 12:33:40,434 | INFO     | sum of deviations: -2480194397.6467924
[2025-06-05 08:34:03] 2025-06-05 12:33:40,434 | INFO     | mean x: 1749119764.5917432
[2025-06-05 08:34:03] 2025-06-05 12:33:40,434 | INFO     | mean y: 2502526.3073394494
[2025-06-05 08:34:03] 2025-06-05 12:33:40,434 | INFO     | -- intersect: 1352930570.7121048
[2025-06-05 08:34:03] 2025-06-05 12:33:40,434 | INFO     | intersect: 1352930570.7121048
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | chi2: 0.004844265993876497
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | -- intersect: 1352930570.7121048
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | current memory leak: -0.77 B/s (using 218 data points, chi2=0.00)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | ..............................
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | . Timing measurements:
[2025-06-05 08:34:03] 2025-06-05 12:33:40,435 | INFO     | . get job = 0 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . initial setup = 3 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . payload setup = 23 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . stage-in = 0 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . payload execution = 15494 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . stage-out = 3 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | . log creation = 0 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,436 | INFO     | ..............................
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | 
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | job summary report
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | --------------------------------------------------
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | PanDA job id: 6667730055
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | task id: 44871837
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | errors: (none)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | pilot state: finished 
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | transexitcode: 0
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | exeerrorcode: 0
[2025-06-05 08:34:03] 2025-06-05 12:33:40,519 | INFO     | exeerrordiag: 
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | exitcode: 0
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | exitmsg: OK
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | cpuconsumptiontime: 46439 s
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | nevents: 400
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | neventsw: 0
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | pid: 43254
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | pgrp: 43254
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | corecount: 8
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | event service: False
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | sizes: {0: 2397221, 1: 2397420, 11: 2397420, 17: 2397654, 22: 2397682, 15521: 2428922, 15524: 2437863, 15527: 2437919, 15553: 2438089}
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | --------------------------------------------------
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | 
[2025-06-05 08:34:03] 2025-06-05 12:33:40,520 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-05 08:34:03] 2025-06-05 12:33:40,537 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,538 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:34:03] 2025-06-05 12:33:40,539 | INFO     | job 6667730055 has completed (purged errors)
[2025-06-05 08:34:03] 2025-06-05 12:33:40,540 | INFO     | overall cleanup function is called
[2025-06-05 08:34:03] 2025-06-05 12:33:41,547 | INFO     | --- collectZombieJob: --- 10, [43254]
[2025-06-05 08:34:03] 2025-06-05 12:33:41,547 | INFO     | zombie collector waiting for pid 43254
[2025-06-05 08:34:03] 2025-06-05 12:33:41,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:34:03] 2025-06-05 12:33:41,547 | INFO     | collected zombie processes
[2025-06-05 08:34:03] 2025-06-05 12:33:41,547 | INFO     | will attempt to kill all subprocesses of pid=43254
[2025-06-05 08:34:03] 2025-06-05 12:33:41,824 | INFO     | process IDs to be killed: [43254] (in reverse order)
[2025-06-05 08:34:03] 2025-06-05 12:33:42,196 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:34:03] 2025-06-05 12:33:42,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:34:03] 2025-06-05 12:33:42,224 | INFO     | did not find any defunct processes belonging to 43254
[2025-06-05 08:34:03] 2025-06-05 12:33:42,241 | INFO     | did not find any defunct processes belonging to 43254
[2025-06-05 08:34:03] 2025-06-05 12:33:42,241 | INFO     | ready for new job
[2025-06-05 08:34:03] 2025-06-05 12:33:42,241 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:34:03] 2025-06-05 12:33:42,243 | INFO     | **************************************
[2025-06-05 08:34:03] 2025-06-05 12:33:42,243 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:34:03] 2025-06-05 12:33:42,243 | INFO     | **************************************
[2025-06-05 08:34:03] 2025-06-05 12:33:42,243 | INFO     | 
[2025-06-05 08:34:03] 2025-06-05 12:33:42,251 | INFO     | architecture information:
[2025-06-05 08:34:03] 2025-06-05 12:33:42,263 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:34:03] 2025-06-05 12:33:42,453 | INFO     | cat /etc/os-release:
[2025-06-05 08:34:03] NAME="CentOS Linux"
[2025-06-05 08:34:03] VERSION="7 (Core)"
[2025-06-05 08:34:03] ID="centos"
[2025-06-05 08:34:03] ID_LIKE="rhel fedora"
[2025-06-05 08:34:03] VERSION_ID="7"
[2025-06-05 08:34:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:34:03] ANSI_COLOR="0;31"
[2025-06-05 08:34:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:34:03] HOME_URL="https://www.centos.org/"
[2025-06-05 08:34:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:34:03] 
[2025-06-05 08:34:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:34:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:34:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:34:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:34:03] 
[2025-06-05 08:34:03] 2025-06-05 12:33:42,453 | INFO     | **************************************
[2025-06-05 08:34:03] 2025-06-05 12:33:42,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-05 08:34:03] 2025-06-05 12:33:43,107 | INFO     | sufficient remaining disk space (104075362304 B)
[2025-06-05 08:34:03] 2025-06-05 12:33:43,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:34:03] 2025-06-05 12:33:43,107 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:34:03] 2025-06-05 12:33:43,107 | INFO     | update_server=False
[2025-06-05 08:34:03] 2025-06-05 12:33:43,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:34:03] 2025-06-05 12:33:43,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:34:03] 2025-06-05 12:33:43,108 | INFO     | aborting loop
[2025-06-05 08:34:03] 2025-06-05 12:33:43,114 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:34:03] 2025-06-05 12:33:43,114 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:34:03] 2025-06-05 12:33:43,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:34:03] 2025-06-05 12:33:43,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:34:03] 2025-06-05 12:33:43,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:34:03] 2025-06-05 12:33:43,234 | INFO     | all data control threads have been joined
[2025-06-05 08:34:03] 2025-06-05 12:33:43,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:34:03] 2025-06-05 12:33:44,113 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,113 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,232 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,240 | INFO     | [data] control thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,255 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,280 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,285 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,538 | INFO     | all payload control threads have been joined
[2025-06-05 08:34:03] 2025-06-05 12:33:44,540 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:44,717 | INFO     | all job control threads have been joined
[2025-06-05 08:34:03] 2025-06-05 12:33:45,122 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:45,163 | INFO     | [job] validate thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:45,374 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:45,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:34:03] 2025-06-05 12:33:45,544 | INFO     | [payload] control thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:45,724 | INFO     | [job] control thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:46,539 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:47,365 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:53,952 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:34:03] 2025-06-05 12:33:54,957 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:34:03] 2025-06-05 12:33:56,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077046912832)>', '<ExcThread(monitor, started 140076390541056)>']
[2025-06-05 08:34:03] 2025-06-05 12:33:57,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:34:03] 2025-06-05 12:33:57,199 | INFO     | [monitor] control thread has ended
[2025-06-05 08:34:03] 2025-06-05 12:34:01,650 | INFO     | all workflow threads have been joined
[2025-06-05 08:34:03] 2025-06-05 12:34:01,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:34:03] 2025-06-05 12:34:01,650 | INFO     | traces error code: 0
[2025-06-05 08:34:03] 2025-06-05 12:34:01,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:34:03] 2025-06-05 12:34:02,050 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:34:03] 2025-06-05 12:34:02,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:34:03] 2025-06-05 12:34:02,162 [wrapper] pilotpid: 94474
[2025-06-05 08:34:03] 2025-06-05 12:34:02,216 [wrapper] Pilot exit status: 0
[2025-06-05 08:34:03] 2025-06-05 12:34:02,394 [wrapper] pandaids: 6667730055 6667730055
[2025-06-05 08:34:03] 2025-06-05 12:34:02,788 [wrapper] cleanup supervisor_pilot 66183 94475
[2025-06-05 08:34:03] 2025-06-05 12:34:02,791 [wrapper] Test setup, not cleaning
[2025-06-05 08:34:03] 2025-06-05 12:34:02,794 [wrapper] apfmon messages muted
[2025-06-05 08:34:03] 2025-06-05 12:34:02,796 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:34:03] 2025-06-05 12:34:02,798 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:34:03]  *** Error codes and diagnostics ***
[2025-06-05 08:34:03]     "exeErrorCode": 0,
[2025-06-05 08:34:03]     "exeErrorDiag": "",
[2025-06-05 08:34:03]     "pilotErrorCode": 0,
[2025-06-05 08:34:03]     "pilotErrorDiag": "",
[2025-06-05 08:34:03]  *** Listing of results directory ***
[2025-06-05 08:34:03] total 640572
[2025-06-05 08:34:03] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas    495897 May 27 18:42 pilot3.tar.gz
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas      5111 May 27 19:10 queuedata.json
[2025-06-05 08:34:03] -rwx------ 1 boincer umatlas     37140 May 27 19:11 runpilot2-wrapper.sh
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas       100 Jun  5 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:34:03] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 00:09 run_atlas
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas       105 Jun  5 00:09 job.xml
[2025-06-05 08:34:03] -rw-r--r-- 3 boincer umatlas 223345358 Jun  5 00:09 EVNT.44871834._002933.pool.root.1
[2025-06-05 08:34:03] -rw-r--r-- 3 boincer umatlas 223345358 Jun  5 00:09 ATLAS.root_0
[2025-06-05 08:34:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 08:34:03] drwxrwx--x 2 boincer umatlas      4096 Jun  5 00:09 shared
[2025-06-05 08:34:03] -rw-r--r-- 2 boincer umatlas    508886 Jun  5 00:09 input.tar.gz
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas         0 Jun  5 00:09 boinc_lockfile
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas      2559 Jun  5 04:13 pandaJob.out
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas    983087 Jun  5 04:13 agis_schedconf.cvmfs.json
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas      6302 Jun  5 08:28 init_data.xml
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas 201880588 Jun  5 08:32 HITS.44871837._074867.pool.root.1
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas       531 Jun  5 08:32 boinc_task_state.xml
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas      1098 Jun  5 08:33 memory_monitor_summary.json
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas   1598969 Jun  5 08:33 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas    403976 Jun  5 08:33 log.44871837._074867.job.log.tgz.1
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas        96 Jun  5 08:33 pilot_heartbeat.json
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas      7768 Jun  5 08:33 heartbeat.json
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 08:33 boinc_mmap_file
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas        28 Jun  5 08:33 wrapper_checkpoint.txt
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas      4549 Jun  5 08:34 pilotlog.txt
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas   1367888 Jun  5 08:34 log.44871837._074867.job.log.1
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas       357 Jun  5 08:34 output.list
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas       620 Jun  5 08:34 runtime_log
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas   1792000 Jun  5 08:34 result.tar.gz
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas      8740 Jun  5 08:34 runtime_log.err
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas       788 Jun  5 08:34 gpcKDmmdIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4baKDmEVWYCo.diag
[2025-06-05 08:34:03] -rw-r--r-- 1 boincer umatlas     23157 Jun  5 08:34 stderr.txt
[2025-06-05 08:34:03] HITS file was successfully produced:
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas 201880588 Jun  5 08:32 shared/HITS.pool.root.1
[2025-06-05 08:34:03]  *** Contents of shared directory: ***
[2025-06-05 08:34:03] total 417536
[2025-06-05 08:34:03] -rw-r--r-- 3 boincer umatlas 223345358 Jun  5 00:09 ATLAS.root_0
[2025-06-05 08:34:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 08:34:03] -rw-r--r-- 2 boincer umatlas    508886 Jun  5 00:09 input.tar.gz
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas 201880588 Jun  5 08:32 HITS.pool.root.1
[2025-06-05 08:34:03] -rw------- 1 boincer umatlas   1792000 Jun  5 08:34 result.tar.gz
08:34:05 (73191): run_atlas exited; CPU time 45813.258259
08:34:05 (73191): called boinc_finish(0)

</stderr_txt>
]]>

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