Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:40 (7487): wrapper (7.7.26015): starting
00:09:40 (7487): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:09:40] Arguments: --nthreads 8
[2025-06-05 00:09:40] Threads: 8
[2025-06-05 00:09:40] Checking for CVMFS
[2025-06-05 00:09:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:09:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:09:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:09:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:09:41] 2.11.2.0 96941 13617 298288 146805 0 334 12707475 18432000 15431 130560 0 73595574 99.585 56623991 45529 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 00:09:41] CVMFS is ok
[2025-06-05 00:09:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:09:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:09:41] Further information can be found at the LHC@home message board.
[2025-06-05 00:09:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:09:41] Checking for apptainer binary...
[2025-06-05 00:09:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:09:41] Running /usr/bin/apptainer --version
[2025-06-05 00:09:41] apptainer version 1.3.2-1.el7
[2025-06-05 00:09:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:09:41] c-212-6.aglt2.org
[2025-06-05 00:09:41] apptainer works
[2025-06-05 00:09:41] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:09:41] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:09:41] Starting ATLAS job with PandaID=6666849729
[2025-06-05 00:09:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:00:02 (7487): BOINC client no longer exists - exiting
04:00:02 (7487): timer handler: client dead, exiting
04:13:13 (73190): wrapper (7.7.26015): starting
04:13:13 (73190): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 04:13:13] Arguments: --nthreads 8
[2025-06-05 04:13:13] Threads: 8
[2025-06-05 04:13:13] This job has been restarted, cleaning up previous attempt
[2025-06-05 04:13:13] Checking for CVMFS
[2025-06-05 04:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:13:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:13:15] 2.11.2.0 96941 13861 295288 146811 1 73 13523791 18432001 19569 130560 0 74577281 99.588 56827668 45540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-05 04:13:15] CVMFS is ok
[2025-06-05 04:13:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 04:13:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 04:13:15] Further information can be found at the LHC@home message board.
[2025-06-05 04:13:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:13:15] Checking for apptainer binary...
[2025-06-05 04:13:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:13:15] Running /usr/bin/apptainer --version
[2025-06-05 04:13:15] apptainer version 1.3.2-1.el7
[2025-06-05 04:13:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:13:18] c-212-6.aglt2.org
[2025-06-05 04:13:18] apptainer works
[2025-06-05 04:13:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:13:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:13:18] Starting ATLAS job with PandaID=6666849729
[2025-06-05 04:13:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:38:11]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:38:11] 2025-06-05 12:37:51,622 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:38:11] 2025-06-05 12:37:51,622 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:38:11] 2025-06-05 12:37:51,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:38:11] 2025-06-05 12:37:51,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:38:11] 2025-06-05 12:37:51,627 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:38:11] 2025-06-05 12:37:51,627 | INFO     | sum of square deviations: 5387317388.131253
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | sum of deviations: 50087638216.80698
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | mean x: 1749119185.084942
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | mean y: 2449869.4633204634
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | -- intersect: -16259678872.686142
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | intersect: -16259678872.686142
[2025-06-05 08:38:11] 2025-06-05 12:37:51,629 | INFO     | chi2: 3.279426146860403
[2025-06-05 08:38:11] 2025-06-05 12:37:51,630 | INFO     | sum of square deviations: 5081299755.594503
[2025-06-05 08:38:11] 2025-06-05 12:37:51,631 | INFO     | sum of deviations: 67818225755.86222
[2025-06-05 08:38:11] 2025-06-05 12:37:51,631 | INFO     | mean x: 1749119032.5866141
[2025-06-05 08:38:11] 2025-06-05 12:37:51,631 | INFO     | mean y: 2458553.6653543306
[2025-06-05 08:38:11] 2025-06-05 12:37:51,631 | INFO     | -- intersect: -23342385311.377544
[2025-06-05 08:38:11] 2025-06-05 12:37:51,631 | INFO     | intersect: -23342385311.377544
[2025-06-05 08:38:11] 2025-06-05 12:37:51,632 | INFO     | chi2: 2.2963875810950194
[2025-06-05 08:38:11] 2025-06-05 12:37:51,632 | INFO     | current chi2=2.2963875810950194 (change=29.975932426668823 %)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,632 | INFO     | sum of square deviations: 4787096298.056223
[2025-06-05 08:38:11] 2025-06-05 12:37:51,633 | INFO     | sum of deviations: 66287214981.056274
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | mean x: 1749118880.0883534
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | mean y: 2457760.0883534136
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | -- intersect: -24217698262.032963
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | intersect: -24217698262.032963
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | chi2: 2.2972913729227575
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | current chi2=2.2972913729227575 (change=-0.03935711180371281 %)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | right removable region: 248
[2025-06-05 08:38:11] 2025-06-05 12:37:51,634 | INFO     | sum of square deviations: 5081286335.594503
[2025-06-05 08:38:11] 2025-06-05 12:37:51,636 | INFO     | sum of deviations: -6904625855.287405
[2025-06-05 08:38:11] 2025-06-05 12:37:51,636 | INFO     | mean x: 1749119337.5866141
[2025-06-05 08:38:11] 2025-06-05 12:37:51,636 | INFO     | mean y: 2478119.44488189
[2025-06-05 08:38:11] 2025-06-05 12:37:51,636 | INFO     | -- intersect: 2379241364.9412055
[2025-06-05 08:38:11] 2025-06-05 12:37:51,636 | INFO     | intersect: 2379241364.9412055
[2025-06-05 08:38:11] 2025-06-05 12:37:51,637 | INFO     | chi2: 1.0831863415240393
[2025-06-05 08:38:11] 2025-06-05 12:37:51,637 | INFO     | current chi2=1.0831863415240393 (change=66.9702474452416 %)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,637 | INFO     | sum of square deviations: 4787069458.056223
[2025-06-05 08:38:11] 2025-06-05 12:37:51,638 | INFO     | sum of deviations: -15907439907.522085
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | mean x: 1749119490.0883534
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | mean y: 2482755.751004016
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | -- intersect: 5814809780.342376
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | intersect: 5814809780.342376
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | chi2: 1.0228480320458981
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | current chi2=1.0228480320458981 (change=5.570445930221511 %)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | left removable region: 20
[2025-06-05 08:38:11] 2025-06-05 12:37:51,639 | INFO     | sum of square deviations: 3675150416.8771873
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | sum of deviations: 588758133.5438585
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | mean x: 1749119459.5964913
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | mean y: 2493266.9298245613
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | -- intersect: -277715212.0614411
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | intersect: -277715212.0614411
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | chi2: 0.005679394201880771
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | -- intersect: -277715212.0614411
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | current memory leak: 0.16 B/s (using 228 data points, chi2=0.01)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | ..............................
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | . Timing measurements:
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | . get job = 0 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | . initial setup = 3 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | . payload setup = 22 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,642 | INFO     | . stage-in = 0 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,643 | INFO     | . payload execution = 15763 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,643 | INFO     | . stage-out = 1 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,643 | INFO     | . log creation = 0 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,643 | INFO     | ..............................
[2025-06-05 08:38:11] 2025-06-05 12:37:51,641 | INFO     | monitor loop #1069: job 0:6666849729 is in state 'finished'
[2025-06-05 08:38:11] 2025-06-05 12:37:51,652 | WARNING  | exception caught: deque index out of range
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | 
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | job summary report
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | --------------------------------------------------
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | PanDA job id: 6666849729
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | task id: 44871837
[2025-06-05 08:38:11] 2025-06-05 12:37:51,717 | INFO     | errors: (none)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | pilot state: finished 
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | transexitcode: 0
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | exeerrorcode: 0
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | exeerrordiag: 
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | exitcode: 0
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | exitmsg: OK
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | cpuconsumptiontime: 46440 s
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | nevents: 400
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | neventsw: 0
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | pid: 43288
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | pgrp: 43288
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | corecount: 8
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | event service: False
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | sizes: {0: 2397340, 11: 2397340, 16: 2397574, 22: 2397602, 15789: 2429075, 15793: 2438200, 15803: 2438314}
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | --------------------------------------------------
[2025-06-05 08:38:11] 2025-06-05 12:37:51,718 | INFO     | 
[2025-06-05 08:38:11] 2025-06-05 12:37:51,719 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,740 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:38:11] 2025-06-05 12:37:51,742 | INFO     | job 6666849729 has completed (purged errors)
[2025-06-05 08:38:11] 2025-06-05 12:37:51,742 | INFO     | overall cleanup function is called
[2025-06-05 08:38:11] 2025-06-05 12:37:52,748 | INFO     | --- collectZombieJob: --- 10, [43288]
[2025-06-05 08:38:11] 2025-06-05 12:37:52,749 | INFO     | zombie collector waiting for pid 43288
[2025-06-05 08:38:11] 2025-06-05 12:37:52,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:38:11] 2025-06-05 12:37:52,749 | INFO     | collected zombie processes
[2025-06-05 08:38:11] 2025-06-05 12:37:52,749 | INFO     | will attempt to kill all subprocesses of pid=43288
[2025-06-05 08:38:11] 2025-06-05 12:37:52,972 | INFO     | process IDs to be killed: [43288] (in reverse order)
[2025-06-05 08:38:11] 2025-06-05 12:37:53,057 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:38:11] 2025-06-05 12:37:53,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:38:11] 2025-06-05 12:37:53,065 | INFO     | did not find any defunct processes belonging to 43288
[2025-06-05 08:38:11] 2025-06-05 12:37:53,073 | INFO     | did not find any defunct processes belonging to 43288
[2025-06-05 08:38:11] 2025-06-05 12:37:53,073 | INFO     | ready for new job
[2025-06-05 08:38:11] 2025-06-05 12:37:53,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:38:11] 2025-06-05 12:37:53,075 | INFO     | **************************************
[2025-06-05 08:38:11] 2025-06-05 12:37:53,075 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:38:11] 2025-06-05 12:37:53,075 | INFO     | **************************************
[2025-06-05 08:38:11] 2025-06-05 12:37:53,075 | INFO     | 
[2025-06-05 08:38:11] 2025-06-05 12:37:53,079 | INFO     | architecture information:
[2025-06-05 08:38:11] 2025-06-05 12:37:53,079 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:38:11] 2025-06-05 12:37:53,113 | INFO     | cat /etc/os-release:
[2025-06-05 08:38:11] NAME="CentOS Linux"
[2025-06-05 08:38:11] VERSION="7 (Core)"
[2025-06-05 08:38:11] ID="centos"
[2025-06-05 08:38:11] ID_LIKE="rhel fedora"
[2025-06-05 08:38:11] VERSION_ID="7"
[2025-06-05 08:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:38:11] ANSI_COLOR="0;31"
[2025-06-05 08:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:38:11] HOME_URL="https://www.centos.org/"
[2025-06-05 08:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:38:11] 
[2025-06-05 08:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:38:11] 
[2025-06-05 08:38:11] 2025-06-05 12:37:53,114 | INFO     | **************************************
[2025-06-05 08:38:11] 2025-06-05 12:37:53,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | INFO     | sufficient remaining disk space (105159589888 B)
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | INFO     | update_server=False
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:38:11] 2025-06-05 12:37:53,635 | INFO     | aborting loop
[2025-06-05 08:38:11] 2025-06-05 12:37:53,853 | INFO     | all data control threads have been joined
[2025-06-05 08:38:11] 2025-06-05 12:37:54,220 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:38:11] 2025-06-05 12:37:54,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:38:11] 2025-06-05 12:37:54,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:38:11] 2025-06-05 12:37:54,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:38:11] 2025-06-05 12:37:54,641 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:54,643 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:54,643 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:54,664 | INFO     | all payload control threads have been joined
[2025-06-05 08:38:11] 2025-06-05 12:37:54,738 | INFO     | all job control threads have been joined
[2025-06-05 08:38:11] 2025-06-05 12:37:54,859 | INFO     | [data] control thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:54,962 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,163 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,172 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,371 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,375 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,578 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,655 | INFO     | [job] validate thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,670 | INFO     | [payload] control thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:55,744 | INFO     | [job] control thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:56,601 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:37:56,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:38:11] 2025-06-05 12:38:00,679 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:38:04,428 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:38:11] 2025-06-05 12:38:05,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:38:11] 2025-06-05 12:38:06,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935881402176)>', '<ExcThread(monitor, started 139935453533952)>']
[2025-06-05 08:38:11] 2025-06-05 12:38:06,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:38:11] 2025-06-05 12:38:06,285 | INFO     | [monitor] control thread has ended
[2025-06-05 08:38:11] 2025-06-05 12:38:11,125 | INFO     | all workflow threads have been joined
[2025-06-05 08:38:11] 2025-06-05 12:38:11,127 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:38:11] 2025-06-05 12:38:11,127 | INFO     | traces error code: 0
[2025-06-05 08:38:11] 2025-06-05 12:38:11,127 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:38:11] 2025-06-05 12:38:11,229 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:38:11] 2025-06-05 12:38:11,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:38:11] 2025-06-05 12:38:11,234 [wrapper] pilotpid: 94839
[2025-06-05 08:38:11] 2025-06-05 12:38:11,238 [wrapper] Pilot exit status: 0
[2025-06-05 08:38:11] 2025-06-05 12:38:11,274 [wrapper] pandaids: 6666849729 6666849729
[2025-06-05 08:38:11] 2025-06-05 12:38:11,332 [wrapper] cleanup supervisor_pilot 66199 94840
[2025-06-05 08:38:11] 2025-06-05 12:38:11,334 [wrapper] Test setup, not cleaning
[2025-06-05 08:38:11] 2025-06-05 12:38:11,336 [wrapper] apfmon messages muted
[2025-06-05 08:38:11] 2025-06-05 12:38:11,338 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:38:11] 2025-06-05 12:38:11,340 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:38:11]  *** Error codes and diagnostics ***
[2025-06-05 08:38:11]     "exeErrorCode": 0,
[2025-06-05 08:38:11]     "exeErrorDiag": "",
[2025-06-05 08:38:11]     "pilotErrorCode": 0,
[2025-06-05 08:38:11]     "pilotErrorDiag": "",
[2025-06-05 08:38:11]  *** Listing of results directory ***
[2025-06-05 08:38:11] total 646740
[2025-06-05 08:38:11] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas    495897 May 27 02:47 pilot3.tar.gz
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      5111 May 27 03:25 queuedata.json
[2025-06-05 08:38:11] -rwx------ 1 boincer umatlas     37140 May 27 03:26 runpilot2-wrapper.sh
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas       100 Jun  5 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:38:11] -rwxr-xr-x 1 boincer umatlas      7986 Jun  5 00:09 run_atlas
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas       105 Jun  5 00:09 job.xml
[2025-06-05 08:38:11] -rw-r--r-- 3 boincer umatlas 227540459 Jun  5 00:09 EVNT.44871834._000793.pool.root.1
[2025-06-05 08:38:11] -rw-r--r-- 3 boincer umatlas 227540459 Jun  5 00:09 ATLAS.root_0
[2025-06-05 08:38:11] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 08:38:11] drwxrwx--x 2 boincer umatlas      4096 Jun  5 00:09 shared
[2025-06-05 08:38:11] -rw-r--r-- 2 boincer umatlas    508884 Jun  5 00:09 input.tar.gz
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas         0 Jun  5 00:09 boinc_lockfile
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      2558 Jun  5 04:13 pandaJob.out
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas    983087 Jun  5 04:13 agis_schedconf.cvmfs.json
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      6302 Jun  5 08:28 init_data.xml
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas 199766681 Jun  5 08:37 HITS.44871837._064094.pool.root.1
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas       531 Jun  5 08:37 boinc_task_state.xml
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas        96 Jun  5 08:37 pilot_heartbeat.json
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas      1098 Jun  5 08:37 memory_monitor_summary.json
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas   1598969 Jun  5 08:37 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas    414282 Jun  5 08:37 log.44871837._064094.job.log.tgz.1
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas      7754 Jun  5 08:37 heartbeat.json
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas        28 Jun  5 08:38 wrapper_checkpoint.txt
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 08:38 boinc_mmap_file
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas      4426 Jun  5 08:38 pilotlog.txt
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas   1383018 Jun  5 08:38 log.44871837._064094.job.log.1
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas       357 Jun  5 08:38 output.list
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas       620 Jun  5 08:38 runtime_log
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas   1812480 Jun  5 08:38 result.tar.gz
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      8740 Jun  5 08:38 runtime_log.err
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas       788 Jun  5 08:38 GVTMDmDt3d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfqYKDm47nktm.diag
[2025-06-05 08:38:11] -rw-r--r-- 1 boincer umatlas      4389 Jun  5 08:38 stderr.txt
[2025-06-05 08:38:11] HITS file was successfully produced:
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas 199766681 Jun  5 08:37 shared/HITS.pool.root.1
[2025-06-05 08:38:11]  *** Contents of shared directory: ***
[2025-06-05 08:38:11] total 419592
[2025-06-05 08:38:11] -rw-r--r-- 3 boincer umatlas 227540459 Jun  5 00:09 ATLAS.root_0
[2025-06-05 08:38:11] -rw-r--r-- 2 boincer umatlas     15093 Jun  5 00:09 start_atlas.sh
[2025-06-05 08:38:11] -rw-r--r-- 2 boincer umatlas    508884 Jun  5 00:09 input.tar.gz
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas 199766681 Jun  5 08:37 HITS.pool.root.1
[2025-06-05 08:38:11] -rw------- 1 boincer umatlas   1812480 Jun  5 08:38 result.tar.gz
08:38:13 (73190): run_atlas exited; CPU time 45866.628623
08:38:13 (73190): called boinc_finish(0)

</stderr_txt>
]]>

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