Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:58:11 (145544): wrapper (7.7.26015): starting
23:58:11 (145544): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 23:58:11] Arguments: --nthreads 12
[2025-06-04 23:58:11] Threads: 12
[2025-06-04 23:58:11] Checking for CVMFS
[2025-06-04 23:58:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:58:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:58:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:58:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:58:11] 2.12.6.0 5181 1696 116504 146804 1 467 28659644 32935936 4895 16776704 0 6721927 99.732 4076189 29816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 23:58:11] CVMFS is ok
[2025-06-04 23:58:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:58:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:58:11] Further information can be found at the LHC@home message board.
[2025-06-04 23:58:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:58:11] Checking for apptainer binary...
[2025-06-04 23:58:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:58:11] Running /usr/bin/apptainer --version
[2025-06-04 23:58:11] apptainer version 1.4.1-1.el9
[2025-06-04 23:58:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:58:11] c6-1-24-3.aglt2.org
[2025-06-04 23:58:11] apptainer works
[2025-06-04 23:58:11] Set ATHENA_PROC_NUMBER=12
[2025-06-04 23:58:11] Set ATHENA_CORE_NUMBER=12
[2025-06-04 23:58:11] Starting ATLAS job with PandaID=6667667273
[2025-06-04 23:58:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:01:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:01:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 01:01:20]  is_altstaged=None
[2025-06-05 01:01:20]  is_tar=False
[2025-06-05 01:01:20]  lfn=log.44871837._074262.job.log.tgz.1
[2025-06-05 01:01:20]  mtime=0
[2025-06-05 01:01:20]  protocol_id=None
[2025-06-05 01:01:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 01:01:20]  replicas=None
[2025-06-05 01:01:20]  scope=mc23_13p6TeV
[2025-06-05 01:01:20]  status=None
[2025-06-05 01:01:20]  status_code=0
[2025-06-05 01:01:20]  storage_token=
[2025-06-05 01:01:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667667273/log.44871837._074262.job.log.tgz.1
[2025-06-05 01:01:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/27/log.44871837._074262.job.log.tgz.1
[2025-06-05 01:01:20]  workdir=None
[2025-06-05 01:01:20] ]
[2025-06-05 01:01:20] 2025-06-05 05:00:52,081 | INFO     | transferring file log.44871837._074262.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667667273/log.44871837._074262.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 01:01:20] 2025-06-05 05:00:52,082 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667667273/log.44871837._074262.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._074262.job
[2025-06-05 01:01:20] 2025-06-05 05:00:52,100 | INFO     | adding to output.list: log.44871837._074262.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/27/log.44871837._074262.job.log.tg
[2025-06-05 01:01:20] 2025-06-05 05:00:52,101 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 01:01:20] 2025-06-05 05:00:52,101 | INFO     | summary of transferred files:
[2025-06-05 01:01:20] 2025-06-05 05:00:52,101 | INFO     |  -- lfn=log.44871837._074262.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 01:01:20] 2025-06-05 05:00:52,102 | INFO     | stage-out finished correctly
[2025-06-05 01:01:20] 2025-06-05 05:00:52,715 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 01:01:20] 2025-06-05 05:00:55,573 | INFO     | job 6667667273 has state=finished
[2025-06-05 01:01:20] 2025-06-05 05:00:55,574 | INFO     | preparing for final server update for job 6667667273 in state='finished'
[2025-06-05 01:01:20] 2025-06-05 05:00:55,574 | INFO     | this job has now completed (state=finished)
[2025-06-05 01:01:20] 2025-06-05 05:00:55,574 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 01:01:20] 2025-06-05 05:00:55,574 | INFO     | log transfer has been attempted: DONE
[2025-06-05 01:01:20] 2025-06-05 05:00:55,575 | INFO     | job 6667667273 has finished - writing final server update
[2025-06-05 01:01:20] 2025-06-05 05:00:55,575 | INFO     | total number of processed events: 400 (read)
[2025-06-05 01:01:20] 2025-06-05 05:00:55,590 | INFO     | executing command: lscpu
[2025-06-05 01:01:20] 2025-06-05 05:00:55,656 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:01:20] 2025-06-05 05:00:56,567 | WARNING  | process 158230 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 01:01:20] 2025-06-05 05:00:56,568 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667667273/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:01:20] 2025-06-05 05:00:56,706 | INFO     | PID=149192 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:01:20] 2025-06-05 05:00:56,707 | INFO     | .. there are 8 such processes running
[2025-06-05 01:01:20] 2025-06-05 05:00:56,868 | INFO     | number of running child processes to parent process 158230: 1
[2025-06-05 01:01:20] 2025-06-05 05:00:56,868 | INFO     | maximum number of monitored processes: 6
[2025-06-05 01:01:20] 2025-06-05 05:00:59,295 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 01:01:20] 2025-06-05 05:00:59,296 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667667273/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:01:20] 2025-06-05 05:00:59,296 | INFO     | extracted standard info from prmon json
[2025-06-05 01:01:20] 2025-06-05 05:00:59,297 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:01:20] 2025-06-05 05:00:59,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:01:20] 2025-06-05 05:00:59,297 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:01:20] 2025-06-05 05:00:59,297 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | sum of square deviations: 48810217.5
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | sum of deviations: -1445959433.0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | mean x: 1749097854.5
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | mean y: 2442576.4444444445
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | -- intersect: 51817916292.666595
[2025-06-05 01:01:20] 2025-06-05 05:00:59,299 | INFO     | intersect: 51817916292.666595
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | chi2: 0.06327075424664032
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | -- intersect: 51817916292.666595
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | current memory leak: -29.62 B/s (using 54 data points, chi2=0.06)
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | ..............................
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | . Timing measurements:
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | . get job = 0 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,300 | INFO     | . initial setup = 2 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | . payload setup = 8 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | . stage-in = 0 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | . payload execution = 3719 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | . stage-out = 0 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | . log creation = 0 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,301 | INFO     | ..............................
[2025-06-05 01:01:20] 2025-06-05 05:00:59,384 | INFO     | 
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | job summary report
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | --------------------------------------------------
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | PanDA job id: 6667667273
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | task id: 44871837
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | errors: (none)
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | pilot state: finished 
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | transexitcode: 0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | exeerrorcode: 0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | exeerrordiag: 
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | exitcode: 0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | exitmsg: OK
[2025-06-05 01:01:20] 2025-06-05 05:00:59,385 | INFO     | cpuconsumptiontime: 40251 s
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | nevents: 400
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | neventsw: 0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | pid: 158230
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | pgrp: 158230
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | corecount: 12
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | event service: False
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | sizes: {0: 2397221, 1: 2397420, 6: 2397626, 11: 2397654, 3731: 2423374, 3732: 2432315, 3733: 2432499, 3739: 2432669}
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | --------------------------------------------------
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | 
[2025-06-05 01:01:20] 2025-06-05 05:00:59,386 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 01:01:20] 2025-06-05 05:00:59,405 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | job 6667667273 has completed (purged errors)
[2025-06-05 01:01:20] 2025-06-05 05:00:59,407 | INFO     | overall cleanup function is called
[2025-06-05 01:01:20] 2025-06-05 05:01:00,415 | INFO     | --- collectZombieJob: --- 10, [158230]
[2025-06-05 01:01:20] 2025-06-05 05:01:00,416 | INFO     | zombie collector waiting for pid 158230
[2025-06-05 01:01:20] 2025-06-05 05:01:00,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:01:20] 2025-06-05 05:01:00,416 | INFO     | collected zombie processes
[2025-06-05 01:01:20] 2025-06-05 05:01:00,416 | INFO     | will attempt to kill all subprocesses of pid=158230
[2025-06-05 01:01:20] 2025-06-05 05:01:00,659 | INFO     | process IDs to be killed: [158230] (in reverse order)
[2025-06-05 01:01:20] 2025-06-05 05:01:00,716 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:01:20] 2025-06-05 05:01:00,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:01:20] 2025-06-05 05:01:00,725 | INFO     | did not find any defunct processes belonging to 158230
[2025-06-05 01:01:20] 2025-06-05 05:01:00,733 | INFO     | did not find any defunct processes belonging to 158230
[2025-06-05 01:01:20] 2025-06-05 05:01:00,734 | INFO     | ready for new job
[2025-06-05 01:01:20] 2025-06-05 05:01:00,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:01:20] 2025-06-05 05:01:00,736 | INFO     | **************************************
[2025-06-05 01:01:20] 2025-06-05 05:01:00,737 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:01:20] 2025-06-05 05:01:00,737 | INFO     | **************************************
[2025-06-05 01:01:20] 2025-06-05 05:01:00,737 | INFO     | 
[2025-06-05 01:01:20] 2025-06-05 05:01:00,752 | INFO     | architecture information:
[2025-06-05 01:01:20] 2025-06-05 05:01:00,753 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:01:20] 2025-06-05 05:01:00,771 | INFO     | cat /etc/os-release:
[2025-06-05 01:01:20] NAME="CentOS Linux"
[2025-06-05 01:01:20] VERSION="7 (Core)"
[2025-06-05 01:01:20] ID="centos"
[2025-06-05 01:01:20] ID_LIKE="rhel fedora"
[2025-06-05 01:01:20] VERSION_ID="7"
[2025-06-05 01:01:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:01:20] ANSI_COLOR="0;31"
[2025-06-05 01:01:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:01:20] HOME_URL="https://www.centos.org/"
[2025-06-05 01:01:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:01:20] 
[2025-06-05 01:01:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:01:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:01:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:01:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:01:20] 
[2025-06-05 01:01:20] 2025-06-05 05:01:00,771 | INFO     | **************************************
[2025-06-05 01:01:20] 2025-06-05 05:01:01,274 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 01:01:20] 2025-06-05 05:01:01,291 | INFO     | sufficient remaining disk space (76565970944 B)
[2025-06-05 01:01:20] 2025-06-05 05:01:01,291 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:01:20] 2025-06-05 05:01:01,291 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:01:20] 2025-06-05 05:01:01,291 | INFO     | update_server=False
[2025-06-05 01:01:20] 2025-06-05 05:01:01,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:01:20] 2025-06-05 05:01:01,292 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:01:20] 2025-06-05 05:01:01,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:01:20] 2025-06-05 05:01:01,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:01:20] 2025-06-05 05:01:01,293 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:01:20] 2025-06-05 05:01:01,293 | INFO     | aborting loop
[2025-06-05 01:01:20] 2025-06-05 05:01:01,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:01:20] 2025-06-05 05:01:01,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:01:20] 2025-06-05 05:01:01,627 | INFO     | all data control threads have been joined
[2025-06-05 01:01:20] 2025-06-05 05:01:01,731 | INFO     | all payload control threads have been joined
[2025-06-05 01:01:20] 2025-06-05 05:01:01,931 | INFO     | all job control threads have been joined
[2025-06-05 01:01:20] 2025-06-05 05:01:02,297 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,298 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,299 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,631 | INFO     | [data] control thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,682 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:01:20] 2025-06-05 05:01:02,736 | INFO     | [payload] control thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,780 | INFO     | [job] validate thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,935 | INFO     | [job] control thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:02,945 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:03,097 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:03,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:01:20] 2025-06-05 05:01:03,459 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:03,532 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:03,767 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:04,707 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:07,316 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:12,337 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:01:20] 2025-06-05 05:01:13,342 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:01:20] 2025-06-05 05:01:15,168 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624056059712)>', '<ExcThread(monitor, started 140623571040000)>']
[2025-06-05 01:01:20] 2025-06-05 05:01:15,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:01:20] 2025-06-05 05:01:15,364 | INFO     | [monitor] control thread has ended
[2025-06-05 01:01:20] 2025-06-05 05:01:20,194 | INFO     | all workflow threads have been joined
[2025-06-05 01:01:20] 2025-06-05 05:01:20,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:01:20] 2025-06-05 05:01:20,195 | INFO     | traces error code: 0
[2025-06-05 01:01:20] 2025-06-05 05:01:20,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:01:20] 2025-06-05 05:01:20,370 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:01:20] 2025-06-05 05:01:20,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:01:20] 2025-06-05 05:01:20,374 [wrapper] pilotpid: 149192
[2025-06-05 01:01:20] 2025-06-05 05:01:20,376 [wrapper] Pilot exit status: 0
[2025-06-05 01:01:20] 2025-06-05 05:01:20,384 [wrapper] pandaids: 6667667273
[2025-06-05 01:01:20] 2025-06-05 05:01:20,432 [wrapper] cleanup supervisor_pilot  358802 149193
[2025-06-05 01:01:20] 2025-06-05 05:01:20,434 [wrapper] Test setup, not cleaning
[2025-06-05 01:01:20] 2025-06-05 05:01:20,436 [wrapper] apfmon messages muted
[2025-06-05 01:01:20] 2025-06-05 05:01:20,439 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:01:20] 2025-06-05 05:01:20,441 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:01:20]  *** Error codes and diagnostics ***
[2025-06-05 01:01:20]     "exeErrorCode": 0,
[2025-06-05 01:01:20]     "exeErrorDiag": "",
[2025-06-05 01:01:20]     "pilotErrorCode": 0,
[2025-06-05 01:01:20]     "pilotErrorDiag": "",
[2025-06-05 01:01:20]  *** Listing of results directory ***
[2025-06-05 01:01:20] total 414636
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas    495897 May 27 17:39 pilot3.tar.gz
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas      5111 May 27 18:26 queuedata.json
[2025-06-05 01:01:20] -rwx------. 1 boincer umatlas     37140 May 27 18:29 runpilot2-wrapper.sh
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas       100 Jun  4 23:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:01:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 23:58 run_atlas
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas       105 Jun  4 23:58 job.xml
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas 224460388 Jun  4 23:58 EVNT.44871834._002911.pool.root.1
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:58 start_atlas.sh
[2025-06-05 01:01:20] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 23:58 shared
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 23:58 input.tar.gz
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas         0 Jun  4 23:58 boinc_lockfile
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 23:58 pandaJob.out
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas    987109 Jun  4 23:58 agis_schedconf.cvmfs.json
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas   1598969 Jun  4 23:58 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:01:20] drwx------. 4 boincer umatlas      4096 Jun  4 23:58 pilot3
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas      6840 Jun  5 00:57 init_data.xml
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas        95 Jun  5 01:00 pilot_heartbeat.json
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas 194804277 Jun  5 01:00 HITS.44871837._074262.pool.root.1
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas       529 Jun  5 01:00 boinc_task_state.xml
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas      1040 Jun  5 01:00 memory_monitor_summary.json
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas    362389 Jun  5 01:00 log.44871837._074262.job.log.tgz.1
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas        27 Jun  5 01:00 wrapper_checkpoint.txt
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 01:00 boinc_mmap_file
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas      7723 Jun  5 01:00 heartbeat.json
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas      4548 Jun  5 01:01 pilotlog.txt
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas    384004 Jun  5 01:01 log.44871837._074262.job.log.1
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas       357 Jun  5 01:01 output.list
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas       620 Jun  5 01:01 runtime_log
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas    768000 Jun  5 01:01 result.tar.gz
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 01:01 runtime_log.err
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas       654 Jun  5 01:01 ngNNDmeyHe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmqVSKDmo5JREn.diag
[2025-06-05 01:01:20] -rw-r--r--. 1 boincer umatlas     21430 Jun  5 01:01 stderr.txt
[2025-06-05 01:01:20] HITS file was successfully produced:
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas 194804277 Jun  5 01:00 shared/HITS.pool.root.1
[2025-06-05 01:01:20]  *** Contents of shared directory: ***
[2025-06-05 01:01:20] total 410712
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas 224460388 Jun  4 23:58 ATLAS.root_0
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:58 start_atlas.sh
[2025-06-05 01:01:20] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 23:58 input.tar.gz
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas 194804277 Jun  5 01:00 HITS.pool.root.1
[2025-06-05 01:01:20] -rw-------. 1 boincer umatlas    768000 Jun  5 01:01 result.tar.gz
01:01:21 (145544): run_atlas exited; CPU time 40323.764908
01:01:21 (145544): called boinc_finish(0)

</stderr_txt>
]]>

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