Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:55:28 (21937): wrapper (7.7.26015): starting
05:55:28 (21937): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:55:28] Arguments: --nthreads 8
[2025-06-05 05:55:28] Threads: 8
[2025-06-05 05:55:28] Checking for CVMFS
[2025-06-05 05:55:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:55:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:55:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:55:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:55:29] 2.11.2.0 1205 34123 91076 146804 3 159 21638161 25165825 2591 130560 0 17539476 99.798 19723861 2255 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 05:55:29] CVMFS is ok
[2025-06-05 05:55:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:55:29] Checking for apptainer binary...
[2025-06-05 05:55:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:55:29] Running /usr/bin/apptainer --version
[2025-06-05 05:55:29] apptainer version 1.3.2-1.el7
[2025-06-05 05:55:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:55:31] cg-vwn325.simple-grid.lan
[2025-06-05 05:55:31] apptainer works
[2025-06-05 05:55:31] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:55:31] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:55:31] Starting ATLAS job with PandaID=6665935115
[2025-06-05 05:55:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:10:24]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:10:24] 2025-06-05 09:09:00,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:10:24] 2025-06-05 09:09:00,844 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:10:24] 2025-06-05 09:09:00,845 | INFO     | sum of square deviations: 8884603792.5
[2025-06-05 11:10:24] 2025-06-05 09:09:00,848 | INFO     | sum of deviations: 41384794280.5
[2025-06-05 11:10:24] 2025-06-05 09:09:00,849 | INFO     | mean x: 1749105108.5
[2025-06-05 11:10:24] 2025-06-05 09:09:00,849 | INFO     | mean y: 2480181.140522876
[2025-06-05 11:10:24] 2025-06-05 09:09:00,849 | INFO     | -- intersect: -8144912407.299895
[2025-06-05 11:10:24] 2025-06-05 09:09:00,849 | INFO     | intersect: -8144912407.299895
[2025-06-05 11:10:24] 2025-06-05 09:09:00,849 | INFO     | chi2: 2.2986490997403135
[2025-06-05 11:10:24] 2025-06-05 09:09:00,850 | INFO     | sum of square deviations: 8456158550.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,859 | INFO     | sum of deviations: 60763114185.999985
[2025-06-05 11:10:24] 2025-06-05 09:09:00,859 | INFO     | mean x: 1749104956.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,859 | INFO     | mean y: 2486982.710963455
[2025-06-05 11:10:24] 2025-06-05 09:09:00,860 | INFO     | -- intersect: -12565993555.62124
[2025-06-05 11:10:24] 2025-06-05 09:09:00,860 | INFO     | intersect: -12565993555.62124
[2025-06-05 11:10:24] 2025-06-05 09:09:00,860 | INFO     | chi2: 1.523824858339169
[2025-06-05 11:10:24] 2025-06-05 09:09:00,860 | INFO     | current chi2=1.523824858339169 (change=33.707808707674396 %)
[2025-06-05 11:10:24] 2025-06-05 09:09:00,861 | INFO     | sum of square deviations: 8041713570.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,863 | INFO     | sum of deviations: 59470318341.49999
[2025-06-05 11:10:24] 2025-06-05 09:09:00,864 | INFO     | mean x: 1749104803.5
[2025-06-05 11:10:24] 2025-06-05 09:09:00,864 | INFO     | mean y: 2486506.9695945946
[2025-06-05 11:10:24] 2025-06-05 09:09:00,864 | INFO     | -- intersect: -12932545134.152607
[2025-06-05 11:10:24] 2025-06-05 09:09:00,864 | INFO     | intersect: -12932545134.152607
[2025-06-05 11:10:24] 2025-06-05 09:09:00,864 | INFO     | chi2: 1.5241485834276027
[2025-06-05 11:10:24] 2025-06-05 09:09:00,865 | INFO     | current chi2=1.5241485834276027 (change=-0.0212442451415738 %)
[2025-06-05 11:10:24] 2025-06-05 09:09:00,865 | INFO     | right removable region: 295
[2025-06-05 11:10:24] 2025-06-05 09:09:00,865 | INFO     | sum of square deviations: 8456158550.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,868 | INFO     | sum of deviations: -9169673232.000002
[2025-06-05 11:10:24] 2025-06-05 09:09:00,868 | INFO     | mean x: 1749105261.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,868 | INFO     | mean y: 2498060.9568106313
[2025-06-05 11:10:24] 2025-06-05 09:09:00,869 | INFO     | -- intersect: 1899189519.2481265
[2025-06-05 11:10:24] 2025-06-05 09:09:00,869 | INFO     | intersect: 1899189519.2481265
[2025-06-05 11:10:24] 2025-06-05 09:09:00,869 | INFO     | chi2: 0.82511718816219
[2025-06-05 11:10:24] 2025-06-05 09:09:00,869 | INFO     | current chi2=0.82511718816219 (change=64.10425635407307 %)
[2025-06-05 11:10:24] 2025-06-05 09:09:00,870 | INFO     | sum of square deviations: 8041713570.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,872 | INFO     | sum of deviations: -3540330535.499998
[2025-06-05 11:10:24] 2025-06-05 09:09:00,873 | INFO     | mean x: 1749105413.5
[2025-06-05 11:10:24] 2025-06-05 09:09:00,873 | INFO     | mean y: 2495973.293918919
[2025-06-05 11:10:24] 2025-06-05 09:09:00,873 | INFO     | -- intersect: 772532266.0964243
[2025-06-05 11:10:24] 2025-06-05 09:09:00,873 | INFO     | intersect: 772532266.0964243
[2025-06-05 11:10:24] 2025-06-05 09:09:00,874 | INFO     | chi2: 0.8015371366376616
[2025-06-05 11:10:24] 2025-06-05 09:09:00,874 | INFO     | current chi2=0.8015371366376616 (change=2.8577821263242704 %)
[2025-06-05 11:10:24] 2025-06-05 09:09:00,874 | INFO     | left removable region: 20
[2025-06-05 11:10:24] 2025-06-05 09:09:00,874 | INFO     | sum of square deviations: 6448679050.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,884 | INFO     | sum of deviations: 12979072113.999998
[2025-06-05 11:10:24] 2025-06-05 09:09:00,884 | INFO     | mean x: 1749105383.0
[2025-06-05 11:10:24] 2025-06-05 09:09:00,884 | INFO     | mean y: 2504025.4763636366
[2025-06-05 11:10:24] 2025-06-05 09:09:00,884 | INFO     | -- intersect: -3517870414.765407
[2025-06-05 11:10:24] 2025-06-05 09:09:00,885 | INFO     | intersect: -3517870414.765407
[2025-06-05 11:10:24] 2025-06-05 09:09:00,885 | INFO     | chi2: 0.0008326616090937753
[2025-06-05 11:10:24] 2025-06-05 09:09:00,885 | INFO     | -- intersect: -3517870414.765407
[2025-06-05 11:10:24] 2025-06-05 09:09:00,885 | INFO     | current memory leak: 2.01 B/s (using 275 data points, chi2=0.00)
[2025-06-05 11:10:24] 2025-06-05 09:09:00,886 | INFO     | ..............................
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . Timing measurements:
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . get job = 0 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . initial setup = 2 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . payload setup = 13 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . stage-in = 0 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . payload execution = 18654 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . stage-out = 3 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | . log creation = 1 s
[2025-06-05 11:10:24] 2025-06-05 09:09:00,887 | INFO     | ..............................
[2025-06-05 11:10:24] 2025-06-05 09:09:01,097 | INFO     | 
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | job summary report
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | --------------------------------------------------
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | PanDA job id: 6665935115
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | task id: 44871837
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | errors: (none)
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:10:24] 2025-06-05 09:09:01,098 | INFO     | pilot state: finished 
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | transexitcode: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | exeerrorcode: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | exeerrordiag: 
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | exitcode: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | exitmsg: OK
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | cpuconsumptiontime: 72225 s
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | nevents: 400
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | neventsw: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | pid: 1777
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | pgrp: 1777
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | corecount: 8
[2025-06-05 11:10:24] 2025-06-05 09:09:01,099 | INFO     | event service: False
[2025-06-05 11:10:24] 2025-06-05 09:09:01,100 | INFO     | sizes: {0: 2397222, 1: 2397421, 12: 2397655, 18672: 2429362, 18676: 2438305, 18679: 2438361, 18769: 2438659}
[2025-06-05 11:10:24] 2025-06-05 09:09:01,100 | INFO     | --------------------------------------------------
[2025-06-05 11:10:24] 2025-06-05 09:09:01,100 | INFO     | 
[2025-06-05 11:10:24] 2025-06-05 09:09:01,100 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-05 11:10:24] 2025-06-05 09:09:01,593 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,593 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,593 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | job 6665935115 has completed (purged errors)
[2025-06-05 11:10:24] 2025-06-05 09:09:01,595 | INFO     | overall cleanup function is called
[2025-06-05 11:10:24] 2025-06-05 09:09:02,607 | INFO     | --- collectZombieJob: --- 10, [1777]
[2025-06-05 11:10:24] 2025-06-05 09:09:02,608 | INFO     | zombie collector waiting for pid 1777
[2025-06-05 11:10:24] 2025-06-05 09:09:02,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:10:24] 2025-06-05 09:09:02,608 | INFO     | collected zombie processes
[2025-06-05 11:10:24] 2025-06-05 09:09:02,608 | INFO     | will attempt to kill all subprocesses of pid=1777
[2025-06-05 11:10:24] 2025-06-05 09:09:02,748 | INFO     | process IDs to be killed: [1777] (in reverse order)
[2025-06-05 11:10:24] 2025-06-05 09:09:03,508 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:10:24] 2025-06-05 09:09:03,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:10:24] 2025-06-05 09:09:03,512 | INFO     | did not find any defunct processes belonging to 1777
[2025-06-05 11:10:24] 2025-06-05 09:09:03,515 | INFO     | did not find any defunct processes belonging to 1777
[2025-06-05 11:10:24] 2025-06-05 09:09:03,516 | INFO     | ready for new job
[2025-06-05 11:10:24] 2025-06-05 09:09:03,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:10:24] 2025-06-05 09:09:03,519 | INFO     | **************************************
[2025-06-05 11:10:24] 2025-06-05 09:09:03,519 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:10:24] 2025-06-05 09:09:03,519 | INFO     | **************************************
[2025-06-05 11:10:24] 2025-06-05 09:09:03,519 | INFO     | 
[2025-06-05 11:10:24] 2025-06-05 09:09:03,520 | INFO     | pilot is running in a VM
[2025-06-05 11:10:24] 2025-06-05 09:09:03,520 | INFO     | architecture information:
[2025-06-05 11:10:24] 2025-06-05 09:09:03,530 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:10:24] 2025-06-05 09:09:03,812 | INFO     | cat /etc/os-release:
[2025-06-05 11:10:24] NAME="CentOS Linux"
[2025-06-05 11:10:24] VERSION="7 (Core)"
[2025-06-05 11:10:24] ID="centos"
[2025-06-05 11:10:24] ID_LIKE="rhel fedora"
[2025-06-05 11:10:24] VERSION_ID="7"
[2025-06-05 11:10:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:10:24] ANSI_COLOR="0;31"
[2025-06-05 11:10:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:10:24] HOME_URL="https://www.centos.org/"
[2025-06-05 11:10:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:10:24] 
[2025-06-05 11:10:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:10:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:10:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:10:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:10:24] 
[2025-06-05 11:10:24] 2025-06-05 09:09:03,813 | INFO     | **************************************
[2025-06-05 11:10:24] 2025-06-05 09:09:04,316 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-05 11:10:24] 2025-06-05 09:09:04,567 | INFO     | sufficient remaining disk space (497274585088 B)
[2025-06-05 11:10:24] 2025-06-05 09:09:04,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:10:24] 2025-06-05 09:09:04,568 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:10:24] 2025-06-05 09:09:04,568 | INFO     | update_server=False
[2025-06-05 11:10:24] 2025-06-05 09:09:04,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:10:24] 2025-06-05 09:09:05,021 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 11:10:24] 2025-06-05 09:09:05,022 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 11:10:24] 2025-06-05 09:09:05,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:10:24] 2025-06-05 09:09:05,022 | INFO     | will abort loop
[2025-06-05 11:10:24] 2025-06-05 09:09:05,557 | INFO     | all data control threads have been joined
[2025-06-05 11:10:24] 2025-06-05 09:09:05,571 | INFO     | all payload control threads have been joined
[2025-06-05 11:10:24] 2025-06-05 09:09:05,574 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:05,661 | INFO     | PID=25642 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 11:10:24] 2025-06-05 09:09:05,661 | INFO     | .. there are 9 such processes running
[2025-06-05 11:10:24] 2025-06-05 09:09:05,661 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:10:24] 2025-06-05 09:09:05,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:10:24] 2025-06-05 09:09:05,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:10:24] 2025-06-05 09:09:05,816 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:05,839 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:05,931 | INFO     | [job] validate thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:05,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:10:24] 2025-06-05 09:09:06,028 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:10:24] 2025-06-05 09:09:06,229 | INFO     | all job control threads have been joined
[2025-06-05 11:10:24] 2025-06-05 09:09:06,270 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,286 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,314 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,563 | INFO     | [data] control thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,577 | INFO     | [payload] control thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:06,747 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:07,119 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:07,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:10:24] 2025-06-05 09:09:07,235 | INFO     | [job] control thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:07,999 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:11,193 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:15,492 | INFO     | job.realtimelogging is not enabled
[2025-06-05 11:10:24] 2025-06-05 09:09:16,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:10:24] 2025-06-05 09:09:18,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204563339072)>', '<ExcThread(monitor, started 140204266465024)>']
[2025-06-05 11:10:24] 2025-06-05 09:09:18,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:10:24] 2025-06-05 09:09:18,740 | INFO     | [monitor] control thread has ended
[2025-06-05 11:10:24] 2025-06-05 09:09:23,262 | INFO     | all workflow threads have been joined
[2025-06-05 11:10:24] 2025-06-05 09:09:23,263 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:10:24] 2025-06-05 09:09:23,263 | INFO     | traces error code: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:23,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:10:24] 2025-06-05 09:09:23,595 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:10:24] 2025-06-05 09:09:23,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:10:24] 2025-06-05 09:09:23,615 [wrapper] pilotpid: 25642
[2025-06-05 11:10:24] 2025-06-05 09:09:23,624 [wrapper] Pilot exit status: 0
[2025-06-05 11:10:24] 2025-06-05 09:09:23,788 [wrapper] pandaids: 6665935115
[2025-06-05 11:10:24] 2025-06-05 09:09:24,373 [wrapper] cleanup supervisor_pilot  9187 25643
[2025-06-05 11:10:24] 2025-06-05 09:09:24,407 [wrapper] Test setup, not cleaning
[2025-06-05 11:10:24] 2025-06-05 09:09:24,440 [wrapper] apfmon messages muted
[2025-06-05 11:10:24] 2025-06-05 09:09:24,472 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:10:24] 2025-06-05 09:09:24,517 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:10:24]  *** Error codes and diagnostics ***
[2025-06-05 11:10:24]     "exeErrorCode": 0,
[2025-06-05 11:10:24]     "exeErrorDiag": "",
[2025-06-05 11:10:24]     "pilotErrorCode": 0,
[2025-06-05 11:10:24]     "pilotErrorDiag": "",
[2025-06-05 11:10:24]  *** Listing of results directory ***
[2025-06-05 11:10:24] total 420744
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc      5111 May 26 13:46 queuedata.json
[2025-06-05 11:10:24] -rwx------. 1 boinc boinc     37140 May 26 13:47 runpilot2-wrapper.sh
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc    495897 May 26 13:47 pilot3.tar.gz
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc       100 Jun  5 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:10:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 05:55 run_atlas
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc       105 Jun  5 05:55 job.xml
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc 223449236 Jun  5 05:55 EVNT.44871834._002000.pool.root.1
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc      6392 Jun  5 05:55 init_data.xml
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:55 start_atlas.sh
[2025-06-05 11:10:24] drwxrwx--x. 2 boinc boinc        68 Jun  5 05:55 shared
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc    508872 Jun  5 05:55 input.tar.gz
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc         0 Jun  5 05:55 boinc_lockfile
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc      2559 Jun  5 05:55 pandaJob.out
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc    987109 Jun  5 05:55 agis_schedconf.cvmfs.json
[2025-06-05 11:10:24] drwx------. 4 boinc boinc      4096 Jun  5 05:55 pilot3
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc 199475549 Jun  5 11:06 HITS.44871837._050218.pool.root.1
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc       531 Jun  5 11:06 boinc_task_state.xml
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc      1013 Jun  5 11:07 memory_monitor_summary.json
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc   1598969 Jun  5 11:07 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc    428990 Jun  5 11:07 log.44871837._050218.job.log.tgz.1
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc        95 Jun  5 11:08 pilot_heartbeat.json
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc      7684 Jun  5 11:09 heartbeat.json
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc      5067 Jun  5 11:09 pilotlog.txt
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc   1621761 Jun  5 11:09 log.44871837._050218.job.log.1
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc       357 Jun  5 11:09 output.list
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc       620 Jun  5 11:09 runtime_log
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc   2068480 Jun  5 11:09 result.tar.gz
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc       657 Jun  5 11:09 TEdMDmjTld7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmugWKDmtqxtSn.diag
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc      8673 Jun  5 11:09 runtime_log.err
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc      8192 Jun  5 11:10 boinc_mmap_file
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc        28 Jun  5 11:10 wrapper_checkpoint.txt
[2025-06-05 11:10:24] -rw-r--r--. 1 boinc boinc     20550 Jun  5 11:10 stderr.txt
[2025-06-05 11:10:24] HITS file was successfully produced:
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc 199475549 Jun  5 11:06 shared/HITS.pool.root.1
[2025-06-05 11:10:24]  *** Contents of shared directory: ***
[2025-06-05 11:10:24] total 415556
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc 223449236 Jun  5 05:55 ATLAS.root_0
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:55 start_atlas.sh
[2025-06-05 11:10:24] -rw-r--r--. 2 boinc boinc    508872 Jun  5 05:55 input.tar.gz
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc 199475549 Jun  5 11:06 HITS.pool.root.1
[2025-06-05 11:10:24] -rw-------. 1 boinc boinc   2068480 Jun  5 11:09 result.tar.gz
11:10:26 (21937): run_atlas exited; CPU time 72462.265948
11:10:26 (21937): called boinc_finish(0)

</stderr_txt>
]]>

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