Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:48:19 (1939365): wrapper (7.7.26015): starting
23:48:19 (1939365): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 23:48:19] Arguments: --nthreads 12
[2025-06-04 23:48:19] Threads: 12
[2025-06-04 23:48:19] Checking for CVMFS
[2025-06-04 23:48:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:48:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:48:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:48:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:48:20] 2.12.6.0 5109 32423 443816 146804 0 280 19901337 32935937 9919 16776704 0 127023672 99.675 111092528 32530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 23:48:20] CVMFS is ok
[2025-06-04 23:48:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:48:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:48:20] Further information can be found at the LHC@home message board.
[2025-06-04 23:48:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:48:20] Checking for apptainer binary...
[2025-06-04 23:48:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:48:20] Running /usr/bin/apptainer --version
[2025-06-04 23:48:20] apptainer version 1.4.1-1.el9
[2025-06-04 23:48:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:48:20] c6-2-29-2.aglt2.org
[2025-06-04 23:48:20] apptainer works
[2025-06-04 23:48:20] Set ATHENA_PROC_NUMBER=12
[2025-06-04 23:48:20] Set ATHENA_CORE_NUMBER=12
[2025-06-04 23:48:20] Starting ATLAS job with PandaID=6678364675
[2025-06-04 23:48:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:56:04]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:56:04]  is_altstaged=None
[2025-06-05 00:56:04]  is_tar=False
[2025-06-05 00:56:04]  lfn=log.45006595._054159.job.log.tgz.1
[2025-06-05 00:56:04]  mtime=0
[2025-06-05 00:56:04]  protocol_id=None
[2025-06-05 00:56:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 00:56:04]  replicas=None
[2025-06-05 00:56:04]  scope=mc23_13p6TeV
[2025-06-05 00:56:04]  status=None
[2025-06-05 00:56:04]  status_code=0
[2025-06-05 00:56:04]  storage_token=
[2025-06-05 00:56:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678364675/log.45006595._054159.job.log.tgz.1
[2025-06-05 00:56:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/84/log.45006595._054159.job.log.tgz.1
[2025-06-05 00:56:04]  workdir=None
[2025-06-05 00:56:04] ]
[2025-06-05 00:56:04] 2025-06-05 04:55:40,122 | INFO     | transferring file log.45006595._054159.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678364675/log.45006595._054159.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 00:56:04] 2025-06-05 04:55:40,122 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678364675/log.45006595._054159.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054159.job
[2025-06-05 00:56:04] 2025-06-05 04:55:40,138 | INFO     | adding to output.list: log.45006595._054159.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/84/log.45006595._054159.job.log.tg
[2025-06-05 00:56:04] 2025-06-05 04:55:40,138 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 00:56:04] 2025-06-05 04:55:40,139 | INFO     | summary of transferred files:
[2025-06-05 00:56:04] 2025-06-05 04:55:40,139 | INFO     |  -- lfn=log.45006595._054159.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 00:56:04] 2025-06-05 04:55:40,139 | INFO     | stage-out finished correctly
[2025-06-05 00:56:04] 2025-06-05 04:55:40,221 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 00:56:04] 2025-06-05 04:55:40,597 | INFO     | PID=1943366 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 00:56:04] 2025-06-05 04:55:40,597 | INFO     | .. there are 8 such processes running
[2025-06-05 00:56:04] 2025-06-05 04:55:40,692 | INFO     | job 6678364675 has state=finished
[2025-06-05 00:56:04] 2025-06-05 04:55:40,693 | INFO     | preparing for final server update for job 6678364675 in state='finished'
[2025-06-05 00:56:04] 2025-06-05 04:55:40,693 | INFO     | this job has now completed (state=finished)
[2025-06-05 00:56:04] 2025-06-05 04:55:40,693 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 00:56:04] 2025-06-05 04:55:40,694 | INFO     | log transfer has been attempted: DONE
[2025-06-05 00:56:04] 2025-06-05 04:55:40,694 | INFO     | job 6678364675 has finished - writing final server update
[2025-06-05 00:56:04] 2025-06-05 04:55:40,694 | INFO     | total number of processed events: 400 (read)
[2025-06-05 00:56:04] 2025-06-05 04:55:40,711 | INFO     | executing command: lscpu
[2025-06-05 00:56:04] 2025-06-05 04:55:40,777 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 00:56:04] 2025-06-05 04:55:41,387 | INFO     | monitor loop #289: job 0:6678364675 is in state 'finished'
[2025-06-05 00:56:04] 2025-06-05 04:55:41,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:56:04] 2025-06-05 04:55:43,890 | INFO     | monitor loop #290: job 0:6678364675 is in state 'finished'
[2025-06-05 00:56:04] 2025-06-05 04:55:43,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,356 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 00:56:04] 2025-06-05 04:55:44,357 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678364675/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,358 | INFO     | extracted standard info from prmon json
[2025-06-05 00:56:04] 2025-06-05 04:55:44,358 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:56:04] 2025-06-05 04:55:44,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:56:04] 2025-06-05 04:55:44,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:56:04] 2025-06-05 04:55:44,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:56:04] 2025-06-05 04:55:44,360 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:56:04] 2025-06-05 04:55:44,360 | INFO     | sum of square deviations: 63659114.847457595
[2025-06-05 00:56:04] 2025-06-05 04:55:44,360 | INFO     | sum of deviations: -5834254286.135593
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | mean x: 1749097410.0508475
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | mean y: 2462378.7118644067
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | -- intersect: 160304393781.79004
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | intersect: 160304393781.79004
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | chi2: 0.12948602125631398
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | -- intersect: 160304393781.79004
[2025-06-05 00:56:04] 2025-06-05 04:55:44,361 | INFO     | current memory leak: -91.65 B/s (using 59 data points, chi2=0.13)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | ..............................
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . Timing measurements:
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . get job = 0 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . initial setup = 2 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . payload setup = 5 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . stage-in = 0 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . payload execution = 4002 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . stage-out = 0 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | . log creation = 0 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,362 | INFO     | ..............................
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | 
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | job summary report
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | --------------------------------------------------
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | PanDA job id: 6678364675
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | task id: 45006595
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | errors: (none)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | pilot state: finished 
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | transexitcode: 0
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | exeerrorcode: 0
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | exeerrordiag: 
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | exitcode: 0
[2025-06-05 00:56:04] 2025-06-05 04:55:44,451 | INFO     | exitmsg: OK
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | cpuconsumptiontime: 32504 s
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | nevents: 400
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | neventsw: 0
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | pid: 1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | pgrp: 1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | corecount: 12
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | event service: False
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | sizes: {0: 2397336, 4: 2397542, 11: 2397570, 4011: 2423328, 4012: 2423327, 4014: 2432508, 4018: 2432622}
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | --------------------------------------------------
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | 
[2025-06-05 00:56:04] 2025-06-05 04:55:44,452 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 00:56:04] 2025-06-05 04:55:44,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | job 6678364675 has completed (purged errors)
[2025-06-05 00:56:04] 2025-06-05 04:55:44,472 | INFO     | overall cleanup function is called
[2025-06-05 00:56:04] 2025-06-05 04:55:45,480 | INFO     | --- collectZombieJob: --- 10, [1949807]
[2025-06-05 00:56:04] 2025-06-05 04:55:45,480 | INFO     | zombie collector waiting for pid 1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:45,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:56:04] 2025-06-05 04:55:45,481 | INFO     | collected zombie processes
[2025-06-05 00:56:04] 2025-06-05 04:55:45,481 | INFO     | will attempt to kill all subprocesses of pid=1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:45,667 | INFO     | process IDs to be killed: [1949807] (in reverse order)
[2025-06-05 00:56:04] 2025-06-05 04:55:45,745 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:56:04] 2025-06-05 04:55:45,746 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:56:04] 2025-06-05 04:55:45,755 | INFO     | did not find any defunct processes belonging to 1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:45,763 | INFO     | did not find any defunct processes belonging to 1949807
[2025-06-05 00:56:04] 2025-06-05 04:55:45,763 | INFO     | ready for new job
[2025-06-05 00:56:04] 2025-06-05 04:55:45,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:56:04] 2025-06-05 04:55:45,765 | INFO     | **************************************
[2025-06-05 00:56:04] 2025-06-05 04:55:45,765 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:56:04] 2025-06-05 04:55:45,765 | INFO     | **************************************
[2025-06-05 00:56:04] 2025-06-05 04:55:45,765 | INFO     | 
[2025-06-05 00:56:04] 2025-06-05 04:55:45,780 | INFO     | architecture information:
[2025-06-05 00:56:04] 2025-06-05 04:55:45,780 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:56:04] 2025-06-05 04:55:45,794 | INFO     | cat /etc/os-release:
[2025-06-05 00:56:04] NAME="CentOS Linux"
[2025-06-05 00:56:04] VERSION="7 (Core)"
[2025-06-05 00:56:04] ID="centos"
[2025-06-05 00:56:04] ID_LIKE="rhel fedora"
[2025-06-05 00:56:04] VERSION_ID="7"
[2025-06-05 00:56:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:56:04] ANSI_COLOR="0;31"
[2025-06-05 00:56:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:56:04] HOME_URL="https://www.centos.org/"
[2025-06-05 00:56:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:56:04] 
[2025-06-05 00:56:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:56:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:56:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:56:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:56:04] 
[2025-06-05 00:56:04] 2025-06-05 04:55:45,794 | INFO     | **************************************
[2025-06-05 00:56:04] 2025-06-05 04:55:46,297 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 00:56:04] 2025-06-05 04:55:46,312 | INFO     | sufficient remaining disk space (76493619200 B)
[2025-06-05 00:56:04] 2025-06-05 04:55:46,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:56:04] 2025-06-05 04:55:46,312 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:56:04] 2025-06-05 04:55:46,312 | INFO     | update_server=False
[2025-06-05 00:56:04] 2025-06-05 04:55:46,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:56:04] 2025-06-05 04:55:46,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:56:04] 2025-06-05 04:55:46,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:56:04] 2025-06-05 04:55:46,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:56:04] 2025-06-05 04:55:46,393 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 00:56:04] 2025-06-05 04:55:46,394 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 00:56:04] 2025-06-05 04:55:46,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:56:04] 2025-06-05 04:55:46,394 | INFO     | will abort loop
[2025-06-05 00:56:04] 2025-06-05 04:55:46,615 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:56:04] 2025-06-05 04:55:46,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:56:04] 2025-06-05 04:55:46,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:56:04] 2025-06-05 04:55:46,706 | INFO     | all job control threads have been joined
[2025-06-05 00:56:04] 2025-06-05 04:55:46,751 | INFO     | all data control threads have been joined
[2025-06-05 00:56:04] 2025-06-05 04:55:47,052 | INFO     | all payload control threads have been joined
[2025-06-05 00:56:04] 2025-06-05 04:55:47,318 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:47,319 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:47,400 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:47,470 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:47,711 | INFO     | [job] control thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:47,756 | INFO     | [data] control thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,058 | INFO     | [payload] control thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,092 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,218 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,219 | INFO     | [job] validate thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,320 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,451 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,627 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:48,728 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:50,322 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:57,061 | INFO     | job.realtimelogging is not enabled
[2025-06-05 00:56:04] 2025-06-05 04:55:58,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:56:04] 2025-06-05 04:55:59,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936320800576)>', '<ExcThread(monitor, started 139935965226752)>']
[2025-06-05 00:56:04] 2025-06-05 04:56:00,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:56:04] 2025-06-05 04:56:00,689 | INFO     | [monitor] control thread has ended
[2025-06-05 00:56:04] 2025-06-05 04:56:04,721 | INFO     | all workflow threads have been joined
[2025-06-05 00:56:04] 2025-06-05 04:56:04,722 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:56:04] 2025-06-05 04:56:04,722 | INFO     | traces error code: 0
[2025-06-05 00:56:04] 2025-06-05 04:56:04,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:56:04] 2025-06-05 04:56:04,853 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:56:04] 2025-06-05 04:56:04,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:56:04] 2025-06-05 04:56:04,858 [wrapper] pilotpid: 1943366
[2025-06-05 00:56:04] 2025-06-05 04:56:04,860 [wrapper] Pilot exit status: 0
[2025-06-05 00:56:04] 2025-06-05 04:56:04,868 [wrapper] pandaids: 6678364675
[2025-06-05 00:56:04] 2025-06-05 04:56:04,912 [wrapper] cleanup supervisor_pilot 2077899 1943367
[2025-06-05 00:56:04] 2025-06-05 04:56:04,916 [wrapper] Test setup, not cleaning
[2025-06-05 00:56:04] 2025-06-05 04:56:04,918 [wrapper] apfmon messages muted
[2025-06-05 00:56:04] 2025-06-05 04:56:04,921 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:56:04] 2025-06-05 04:56:04,923 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:56:04]  *** Error codes and diagnostics ***
[2025-06-05 00:56:04]     "exeErrorCode": 0,
[2025-06-05 00:56:04]     "exeErrorDiag": "",
[2025-06-05 00:56:04]     "pilotErrorCode": 0,
[2025-06-05 00:56:04]     "pilotErrorDiag": "",
[2025-06-05 00:56:04]  *** Listing of results directory ***
[2025-06-05 00:56:04] total 389828
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-05 00:56:04] -rwx------. 1 boincer umatlas     37140 Jun  4 02:27 runpilot2-wrapper.sh
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:27 queuedata.json
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas       100 Jun  4 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:56:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 23:48 run_atlas
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas       105 Jun  4 23:48 job.xml
[2025-06-05 00:56:04] -rw-r--r--. 2 boincer umatlas 213299160 Jun  4 23:48 EVNT.45006593._002168.pool.root.1
[2025-06-05 00:56:04] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:48 start_atlas.sh
[2025-06-05 00:56:04] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 23:48 shared
[2025-06-05 00:56:04] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 23:48 input.tar.gz
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas         0 Jun  4 23:48 boinc_lockfile
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas      2522 Jun  4 23:48 pandaJob.out
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas    987109 Jun  4 23:48 agis_schedconf.cvmfs.json
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas   1598969 Jun  4 23:48 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:56:04] drwx------. 4 boincer umatlas      4096 Jun  4 23:48 pilot3
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas      6842 Jun  5 00:47 init_data.xml
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas 180587870 Jun  5 00:55 HITS.45006595._054159.pool.root.1
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas       529 Jun  5 00:55 boinc_task_state.xml
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas      1026 Jun  5 00:55 memory_monitor_summary.json
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas        95 Jun  5 00:55 pilot_heartbeat.json
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas    341879 Jun  5 00:55 log.45006595._054159.job.log.tgz.1
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas      7701 Jun  5 00:55 heartbeat.json
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 00:55 boinc_mmap_file
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas        27 Jun  5 00:55 wrapper_checkpoint.txt
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas      4611 Jun  5 00:56 pilotlog.txt
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas    396444 Jun  5 00:56 log.45006595._054159.job.log.1
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas       357 Jun  5 00:56 output.list
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas       620 Jun  5 00:56 runtime_log
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas    757760 Jun  5 00:56 result.tar.gz
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 00:56 runtime_log.err
[2025-06-05 00:56:04] -rw-------. 1 boincer umatlas       654 Jun  5 00:56 IxGLDmrlwg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRraKDm3OpTNo.diag
[2025-06-05 00:56:04] -rw-r--r--. 1 boincer umatlas     21459 Jun  5 00:56 stderr.txt
[2025-06-05 00:56:05] HITS file was successfully produced:
[2025-06-05 00:56:05] -rw-------. 1 boincer umatlas 180587870 Jun  5 00:55 shared/HITS.pool.root.1
[2025-06-05 00:56:05]  *** Contents of shared directory: ***
[2025-06-05 00:56:05] total 385912
[2025-06-05 00:56:05] -rw-r--r--. 2 boincer umatlas 213299160 Jun  4 23:48 ATLAS.root_0
[2025-06-05 00:56:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:48 start_atlas.sh
[2025-06-05 00:56:05] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 23:48 input.tar.gz
[2025-06-05 00:56:05] -rw-------. 1 boincer umatlas 180587870 Jun  5 00:55 HITS.pool.root.1
[2025-06-05 00:56:05] -rw-------. 1 boincer umatlas    757760 Jun  5 00:56 result.tar.gz
00:56:06 (1939365): run_atlas exited; CPU time 32571.375160
00:56:06 (1939365): called boinc_finish(0)

</stderr_txt>
]]>

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