Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:08:12 (1344308): wrapper (7.7.26015): starting
02:08:12 (1344308): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 02:08:12] Arguments: --nthreads 12
[2025-06-05 02:08:12] Threads: 12
[2025-06-05 02:08:12] Checking for CVMFS
[2025-06-05 02:08:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:08:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:08:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:08:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:08:12] 2.12.6.0 40552 1858 160032 146807 0 145 28089672 32935937 15227 16776704 0 3486814 99.146 9173198 43384 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-05 02:08:12] CVMFS is ok
[2025-06-05 02:08:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 02:08:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 02:08:12] Further information can be found at the LHC@home message board.
[2025-06-05 02:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:08:12] Checking for apptainer binary...
[2025-06-05 02:08:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:08:12] Running /usr/bin/apptainer --version
[2025-06-05 02:08:12] apptainer version 1.4.1-1.el9
[2025-06-05 02:08:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:08:13] c6-1-26-4.aglt2.org
[2025-06-05 02:08:13] apptainer works
[2025-06-05 02:08:13] Set ATHENA_PROC_NUMBER=12
[2025-06-05 02:08:13] Set ATHENA_CORE_NUMBER=12
[2025-06-05 02:08:13] Starting ATLAS job with PandaID=6680359227
[2025-06-05 02:08:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:56:40]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:56:41] 2025-06-05 07:56:24,309 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 03:56:41] 2025-06-05 07:56:24,310 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680359227/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,311 | INFO     | extracted standard info from prmon json
[2025-06-05 03:56:41] 2025-06-05 07:56:24,311 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:56:41] 2025-06-05 07:56:24,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:56:41] 2025-06-05 07:56:24,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:56:41] 2025-06-05 07:56:24,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:56:41] 2025-06-05 07:56:24,322 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:56:41] 2025-06-05 07:56:24,323 | INFO     | sum of square deviations: 358897180.05714303
[2025-06-05 03:56:41] 2025-06-05 07:56:24,323 | INFO     | sum of deviations: 14938574440.971413
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | mean x: 1749106977.2571428
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | mean y: 2318356.3714285716
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | -- intersect: -72801722012.0095
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | intersect: -72801722012.0095
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | chi2: 2.5466841818506167
[2025-06-05 03:56:41] 2025-06-05 07:56:24,324 | INFO     | sum of square deviations: 310030079.7100007
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | sum of deviations: 20815999992.70999
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | mean x: 1749106824.77
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | mean y: 2335928.77
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | -- intersect: -117435970979.12212
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | intersect: -117435970979.12212
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | chi2: 1.8472905158536628
[2025-06-05 03:56:41] 2025-06-05 07:56:24,325 | INFO     | current chi2=1.8472905158536628 (change=27.462913186538923 %)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,326 | INFO     | sum of square deviations: 265801906.42105204
[2025-06-05 03:56:41] 2025-06-05 07:56:24,326 | INFO     | sum of deviations: 20383581894.473686
[2025-06-05 03:56:41] 2025-06-05 07:56:24,333 | INFO     | mean x: 1749106672.2631578
[2025-06-05 03:56:41] 2025-06-05 07:56:24,333 | INFO     | mean y: 2334475.4210526315
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | -- intersect: -134131613532.34476
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | intersect: -134131613532.34476
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | chi2: 1.8352592062755035
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | current chi2=1.8352592062755035 (change=0.6512949357399461 %)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | right removable region: 94
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | sum of square deviations: 310013609.7100007
[2025-06-05 03:56:41] 2025-06-05 07:56:24,334 | INFO     | sum of deviations: -3626085465.679998
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | mean x: 1749107129.77
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | mean y: 2375569.84
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | -- intersect: 20460870753.67791
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | intersect: 20460870753.67791
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | chi2: 0.8686946447590214
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | current chi2=0.8686946447590214 (change=65.88918834341835 %)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,335 | INFO     | sum of square deviations: 265781289.32631615
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | sum of deviations: -7913520401.905264
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | mean x: 1749107282.2842104
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | mean y: 2390066.6631578947
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | -- intersect: 52081286209.28433
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | intersect: 52081286209.28433
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | chi2: 0.746783361334323
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | current chi2=0.746783361334323 (change=14.03384770013368 %)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | left removable region: 20
[2025-06-05 03:56:41] 2025-06-05 07:56:24,336 | INFO     | sum of square deviations: 125599899.09459445
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | sum of deviations: -1752266768.0405405
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | mean x: 1749107251.7702703
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | mean y: 2421347.527027027
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | -- intersect: 24404531007.72237
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | intersect: 24404531007.72237
[2025-06-05 03:56:41] 2025-06-05 07:56:24,337 | INFO     | chi2: 0.024893383849006207
[2025-06-05 03:56:41] 2025-06-05 07:56:24,342 | INFO     | -- intersect: 24404531007.72237
[2025-06-05 03:56:41] 2025-06-05 07:56:24,342 | INFO     | current memory leak: -13.95 B/s (using 74 data points, chi2=0.02)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | ..............................
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . Timing measurements:
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . get job = 0 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . initial setup = 3 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . payload setup = 19 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . stage-in = 0 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,343 | INFO     | . payload execution = 6373 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,344 | INFO     | . stage-out = 1 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,344 | INFO     | . log creation = 0 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,344 | INFO     | ..............................
[2025-06-05 03:56:41] 2025-06-05 07:56:24,570 | INFO     | 
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | job summary report
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | --------------------------------------------------
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | PanDA job id: 6680359227
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | task id: 45006595
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | errors: (none)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:56:41] 2025-06-05 07:56:24,571 | INFO     | pilot state: finished 
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | transexitcode: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | exeerrorcode: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | exeerrordiag: 
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | exitcode: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | exitmsg: OK
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | cpuconsumptiontime: 33983 s
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | nevents: 400
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | neventsw: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | pid: 1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | pgrp: 1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | corecount: 12
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | event service: False
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | sizes: {0: 2397114, 1: 2397313, 2: 2397341, 13: 2397341, 20: 2397603, 24: 2397631, 6396: 2424660, 6398: 2433601, 6400: 2433657, 6419: 2433827}
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | --------------------------------------------------
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | 
[2025-06-05 03:56:41] 2025-06-05 07:56:24,572 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:56:41] 2025-06-05 07:56:24,596 | INFO     | job 6680359227 has completed (purged errors)
[2025-06-05 03:56:41] 2025-06-05 07:56:24,597 | INFO     | overall cleanup function is called
[2025-06-05 03:56:41] 2025-06-05 07:56:25,605 | INFO     | --- collectZombieJob: --- 10, [1355162]
[2025-06-05 03:56:41] 2025-06-05 07:56:25,605 | INFO     | zombie collector waiting for pid 1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:25,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:56:41] 2025-06-05 07:56:25,606 | INFO     | collected zombie processes
[2025-06-05 03:56:41] 2025-06-05 07:56:25,606 | INFO     | will attempt to kill all subprocesses of pid=1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:25,918 | INFO     | process IDs to be killed: [1355162] (in reverse order)
[2025-06-05 03:56:41] 2025-06-05 07:56:26,139 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:56:41] 2025-06-05 07:56:26,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:56:41] 2025-06-05 07:56:26,162 | INFO     | did not find any defunct processes belonging to 1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:26,184 | INFO     | did not find any defunct processes belonging to 1355162
[2025-06-05 03:56:41] 2025-06-05 07:56:26,188 | INFO     | ready for new job
[2025-06-05 03:56:41] 2025-06-05 07:56:26,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:56:41] 2025-06-05 07:56:26,190 | INFO     | **************************************
[2025-06-05 03:56:41] 2025-06-05 07:56:26,191 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:56:41] 2025-06-05 07:56:26,191 | INFO     | **************************************
[2025-06-05 03:56:41] 2025-06-05 07:56:26,191 | INFO     | 
[2025-06-05 03:56:41] 2025-06-05 07:56:26,210 | INFO     | architecture information:
[2025-06-05 03:56:41] 2025-06-05 07:56:26,214 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:56:41] 2025-06-05 07:56:26,310 | INFO     | cat /etc/os-release:
[2025-06-05 03:56:41] NAME="CentOS Linux"
[2025-06-05 03:56:41] VERSION="7 (Core)"
[2025-06-05 03:56:41] ID="centos"
[2025-06-05 03:56:41] ID_LIKE="rhel fedora"
[2025-06-05 03:56:41] VERSION_ID="7"
[2025-06-05 03:56:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:56:41] ANSI_COLOR="0;31"
[2025-06-05 03:56:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:56:41] HOME_URL="https://www.centos.org/"
[2025-06-05 03:56:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:56:41] 
[2025-06-05 03:56:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:56:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:56:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:56:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:56:41] 
[2025-06-05 03:56:41] 2025-06-05 07:56:26,310 | INFO     | **************************************
[2025-06-05 03:56:41] 2025-06-05 07:56:26,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 03:56:41] 2025-06-05 07:56:26,929 | INFO     | sufficient remaining disk space (75895930880 B)
[2025-06-05 03:56:41] 2025-06-05 07:56:26,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:56:41] 2025-06-05 07:56:26,930 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:56:41] 2025-06-05 07:56:26,930 | INFO     | update_server=False
[2025-06-05 03:56:41] 2025-06-05 07:56:26,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:56:41] 2025-06-05 07:56:26,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:56:41] 2025-06-05 07:56:27,029 | INFO     | all data control threads have been joined
[2025-06-05 03:56:41] 2025-06-05 07:56:27,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:56:41] 2025-06-05 07:56:27,333 | INFO     | aborting loop
[2025-06-05 03:56:41] 2025-06-05 07:56:27,639 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:56:41] 2025-06-05 07:56:27,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:56:41] 2025-06-05 07:56:27,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:56:41] 2025-06-05 07:56:27,936 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,034 | INFO     | [data] control thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,144 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,145 | INFO     | [job] validate thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,154 | INFO     | all job control threads have been joined
[2025-06-05 03:56:41] 2025-06-05 07:56:28,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,204 | INFO     | all payload control threads have been joined
[2025-06-05 03:56:41] 2025-06-05 07:56:28,338 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,374 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,379 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,509 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:28,938 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:29,157 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:29,160 | INFO     | [job] control thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:29,210 | INFO     | [payload] control thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:29,303 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:29,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:56:41] 2025-06-05 07:56:30,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:56:41] 2025-06-05 07:56:30,468 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:34,141 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:56:41] 2025-06-05 07:56:34,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465604839232)>', '<ExcThread(monitor, started 140464808253184)>']
[2025-06-05 03:56:41] 2025-06-05 07:56:35,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:56:41] 2025-06-05 07:56:35,687 | INFO     | [monitor] control thread has ended
[2025-06-05 03:56:41] 2025-06-05 07:56:39,918 | INFO     | all workflow threads have been joined
[2025-06-05 03:56:41] 2025-06-05 07:56:39,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:56:41] 2025-06-05 07:56:39,919 | INFO     | traces error code: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:39,920 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:56:41] 2025-06-05 07:56:40,174 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:56:41] 2025-06-05 07:56:40,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:56:41] 2025-06-05 07:56:40,197 [wrapper] pilotpid: 1347955
[2025-06-05 03:56:41] 2025-06-05 07:56:40,230 [wrapper] Pilot exit status: 0
[2025-06-05 03:56:41] 2025-06-05 07:56:40,251 [wrapper] pandaids: 6680359227
[2025-06-05 03:56:41] 2025-06-05 07:56:40,323 [wrapper] cleanup supervisor_pilot 1665016 1347956
[2025-06-05 03:56:41] 2025-06-05 07:56:40,353 [wrapper] Test setup, not cleaning
[2025-06-05 03:56:41] 2025-06-05 07:56:40,371 [wrapper] apfmon messages muted
[2025-06-05 03:56:41] 2025-06-05 07:56:40,374 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:56:41] 2025-06-05 07:56:40,377 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:56:41]  *** Error codes and diagnostics ***
[2025-06-05 03:56:41]     "exeErrorCode": 0,
[2025-06-05 03:56:41]     "exeErrorDiag": "",
[2025-06-05 03:56:41]     "pilotErrorCode": 0,
[2025-06-05 03:56:41]     "pilotErrorDiag": "",
[2025-06-05 03:56:41]  *** Listing of results directory ***
[2025-06-05 03:56:41] total 393096
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 23:16 pilot3.tar.gz
[2025-06-05 03:56:41] -rwx------. 1 boincer umatlas     37140 Jun  4 23:44 runpilot2-wrapper.sh
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 23:45 queuedata.json
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas       100 Jun  5 02:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:56:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  5 02:08 run_atlas
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas       105 Jun  5 02:08 job.xml
[2025-06-05 03:56:41] -rw-r--r--. 2 boincer umatlas 216382184 Jun  5 02:08 EVNT.45006593._001418.pool.root.1
[2025-06-05 03:56:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 02:08 start_atlas.sh
[2025-06-05 03:56:41] drwxrwx--x. 2 boincer umatlas      4096 Jun  5 02:08 shared
[2025-06-05 03:56:41] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 02:08 input.tar.gz
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas         0 Jun  5 02:08 boinc_lockfile
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas      2521 Jun  5 02:08 pandaJob.out
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas    987109 Jun  5 02:08 agis_schedconf.cvmfs.json
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas   1598969 Jun  5 02:08 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:56:41] drwx------. 4 boincer umatlas      4096 Jun  5 02:08 pilot3
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas      6841 Jun  5 03:48 init_data.xml
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas 180427314 Jun  5 03:55 HITS.45006595._057038.pool.root.1
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas       530 Jun  5 03:55 boinc_task_state.xml
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas        95 Jun  5 03:55 pilot_heartbeat.json
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas      1040 Jun  5 03:55 memory_monitor_summary.json
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas    365905 Jun  5 03:56 log.45006595._057038.job.log.tgz.1
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas      7718 Jun  5 03:56 heartbeat.json
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas        27 Jun  5 03:56 wrapper_checkpoint.txt
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas      4353 Jun  5 03:56 pilotlog.txt
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas    582566 Jun  5 03:56 log.45006595._057038.job.log.1
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 03:56 boinc_mmap_file
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas       357 Jun  5 03:56 output.list
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas       620 Jun  5 03:56 runtime_log
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas    962560 Jun  5 03:56 result.tar.gz
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas      8666 Jun  5 03:56 runtime_log.err
[2025-06-05 03:56:41] -rw-------. 1 boincer umatlas       654 Jun  5 03:56 FPwLDmRiGh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmh4nKDmZKcktn.diag
[2025-06-05 03:56:41] -rw-r--r--. 1 boincer umatlas     20902 Jun  5 03:56 stderr.txt
[2025-06-05 03:57:01] HITS file was successfully produced:
[2025-06-05 03:57:01] -rw-------. 1 boincer umatlas 180427314 Jun  5 03:55 shared/HITS.pool.root.1
[2025-06-05 03:57:01]  *** Contents of shared directory: ***
[2025-06-05 03:57:01] total 388972
[2025-06-05 03:57:01] -rw-r--r--. 2 boincer umatlas 216382184 Jun  5 02:08 ATLAS.root_0
[2025-06-05 03:57:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  5 02:08 start_atlas.sh
[2025-06-05 03:57:01] -rw-r--r--. 2 boincer umatlas    508876 Jun  5 02:08 input.tar.gz
[2025-06-05 03:57:01] -rw-------. 1 boincer umatlas 180427314 Jun  5 03:55 HITS.pool.root.1
[2025-06-05 03:57:01] -rw-------. 1 boincer umatlas    962560 Jun  5 03:56 result.tar.gz
03:57:03 (1344308): run_atlas exited; CPU time 34110.053096
03:57:03 (1344308): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN