Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:42:43 (554075): wrapper (7.7.26015): starting
23:42:43 (554075): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:42:43] Arguments: --nthreads 8
[2025-06-04 23:42:43] Threads: 8
[2025-06-04 23:42:43] Checking for CVMFS
[2025-06-04 23:42:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:42:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:42:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:42:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:42:44] 2.12.6.0 5697 2254 233932 146804 1 278 29206851 32935936 32977 16776704 0 24828073 99.695 17620469 23481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 23:42:44] CVMFS is ok
[2025-06-04 23:42:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:42:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:42:44] Further information can be found at the LHC@home message board.
[2025-06-04 23:42:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:42:44] Checking for apptainer binary...
[2025-06-04 23:42:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:42:44] Running /usr/bin/apptainer --version
[2025-06-04 23:42:44] apptainer version 1.4.1-1.el9
[2025-06-04 23:42:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:42:45] c7-3-17.aglt2.org
[2025-06-04 23:42:45] apptainer works
[2025-06-04 23:42:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:42:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:42:45] Starting ATLAS job with PandaID=6668531617
[2025-06-04 23:42:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:24:12]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:24:12]  lfn=log.44871837._085374.job.log.tgz.1
[2025-06-05 01:24:12]  mtime=0
[2025-06-05 01:24:12]  protocol_id=None
[2025-06-05 01:24:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 01:24:12]  replicas=None
[2025-06-05 01:24:12]  scope=mc23_13p6TeV
[2025-06-05 01:24:12]  status=None
[2025-06-05 01:24:12]  status_code=0
[2025-06-05 01:24:12]  storage_token=
[2025-06-05 01:24:12]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6668531617/log.44871837._085374.job.log.tgz.1
[2025-06-05 01:24:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/be/log.44871837._085374.job.log.tgz.1
[2025-06-05 01:24:12]  workdir=None
[2025-06-05 01:24:12] ]
[2025-06-05 01:24:12] 2025-06-05 05:23:49,449 | INFO     | transferring file log.44871837._085374.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6668531617/log.44871837._085374.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 01:24:12] 2025-06-05 05:23:49,450 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6668531617/log.44871837._085374.job.log.tgz.1 /tmp/boinchome/slots/2/log.44871837._085374.job
[2025-06-05 01:24:12] 2025-06-05 05:23:49,474 | INFO     | adding to output.list: log.44871837._085374.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/be/log.44871837._085374.job.log.tg
[2025-06-05 01:24:12] 2025-06-05 05:23:49,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 01:24:12] 2025-06-05 05:23:49,476 | INFO     | summary of transferred files:
[2025-06-05 01:24:12] 2025-06-05 05:23:49,476 | INFO     |  -- lfn=log.44871837._085374.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 01:24:12] 2025-06-05 05:23:49,476 | INFO     | stage-out finished correctly
[2025-06-05 01:24:12] 2025-06-05 05:23:49,693 | INFO     | PID=559989 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:24:12] 2025-06-05 05:23:49,693 | INFO     | .. there are 34 such processes running
[2025-06-05 01:24:12] 2025-06-05 05:23:49,933 | INFO     | monitor loop #446: job 0:6668531617 is in state 'finished'
[2025-06-05 01:24:12] 2025-06-05 05:23:49,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:24:12] 2025-06-05 05:23:50,431 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 01:24:12] 2025-06-05 05:23:52,436 | INFO     | monitor loop #447: job 0:6668531617 is in state 'finished'
[2025-06-05 01:24:12] 2025-06-05 05:23:52,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:24:12] 2025-06-05 05:23:52,457 | INFO     | job 6668531617 has state=finished
[2025-06-05 01:24:12] 2025-06-05 05:23:52,457 | INFO     | preparing for final server update for job 6668531617 in state='finished'
[2025-06-05 01:24:12] 2025-06-05 05:23:52,458 | INFO     | this job has now completed (state=finished)
[2025-06-05 01:24:12] 2025-06-05 05:23:52,458 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 01:24:12] 2025-06-05 05:23:52,458 | INFO     | log transfer has been attempted: DONE
[2025-06-05 01:24:12] 2025-06-05 05:23:52,458 | INFO     | job 6668531617 has finished - writing final server update
[2025-06-05 01:24:12] 2025-06-05 05:23:52,458 | INFO     | total number of processed events: 400 (read)
[2025-06-05 01:24:12] 2025-06-05 05:23:52,463 | INFO     | executing command: lscpu
[2025-06-05 01:24:12] 2025-06-05 05:23:52,537 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:24:12] 2025-06-05 05:23:54,940 | INFO     | monitor loop #448: job 0:6668531617 is in state 'finished'
[2025-06-05 01:24:12] 2025-06-05 05:23:54,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,328 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 01:24:12] 2025-06-05 05:23:57,329 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6668531617/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,330 | INFO     | extracted standard info from prmon json
[2025-06-05 01:24:12] 2025-06-05 05:23:57,331 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:24:12] 2025-06-05 05:23:57,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:24:12] 2025-06-05 05:23:57,331 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:24:12] 2025-06-05 05:23:57,331 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:24:12] 2025-06-05 05:23:57,333 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:24:12] 2025-06-05 05:23:57,333 | INFO     | sum of square deviations: 226022842.5
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | sum of deviations: -7948368563.999999
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | mean x: 1749098150.5
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | mean y: 2312746.0888888887
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | -- intersect: 61511479700.241936
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | intersect: 61511479700.241936
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | chi2: 0.24798034954976497
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | -- intersect: 61511479700.241936
[2025-06-05 01:24:12] 2025-06-05 05:23:57,334 | INFO     | current memory leak: -35.17 B/s (using 90 data points, chi2=0.25)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | ..............................
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . Timing measurements:
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . get job = 0 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . initial setup = 4 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . payload setup = 50 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . stage-in = 0 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . payload execution = 5916 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . stage-out = 0 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | . log creation = 0 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,335 | INFO     | ..............................
[2025-06-05 01:24:12] 2025-06-05 05:23:57,412 | INFO     | 
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | job summary report
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | --------------------------------------------------
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | PanDA job id: 6668531617
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | task id: 44871837
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | errors: (none)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | pilot state: finished 
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | transexitcode: 0
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | exeerrorcode: 0
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | exeerrordiag: 
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | exitcode: 0
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | exitmsg: OK
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | cpuconsumptiontime: 42621 s
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | nevents: 400
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | neventsw: 0
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | pid: 570091
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | pgrp: 570091
[2025-06-05 01:24:12] 2025-06-05 05:23:57,413 | INFO     | corecount: 8
[2025-06-05 01:24:12] 2025-06-05 05:23:57,414 | INFO     | event service: False
[2025-06-05 01:24:12] 2025-06-05 05:23:57,414 | INFO     | sizes: {0: 2397165, 1: 2397249, 2: 2397448, 13: 2397448, 20: 2397710, 23: 2397738, 5970: 2424339, 5971: 2433280, 5972: 2433336, 5979: 2433506}
[2025-06-05 01:24:12] 2025-06-05 05:23:57,414 | INFO     | --------------------------------------------------
[2025-06-05 01:24:12] 2025-06-05 05:23:57,414 | INFO     | 
[2025-06-05 01:24:12] 2025-06-05 05:23:57,414 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-05 01:24:12] 2025-06-05 05:23:57,431 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:24:12] 2025-06-05 05:23:57,433 | INFO     | job 6668531617 has completed (purged errors)
[2025-06-05 01:24:12] 2025-06-05 05:23:57,434 | INFO     | overall cleanup function is called
[2025-06-05 01:24:12] 2025-06-05 05:23:58,441 | INFO     | --- collectZombieJob: --- 10, [570091]
[2025-06-05 01:24:12] 2025-06-05 05:23:58,441 | INFO     | zombie collector waiting for pid 570091
[2025-06-05 01:24:12] 2025-06-05 05:23:58,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:24:12] 2025-06-05 05:23:58,442 | INFO     | collected zombie processes
[2025-06-05 01:24:12] 2025-06-05 05:23:58,442 | INFO     | will attempt to kill all subprocesses of pid=570091
[2025-06-05 01:24:12] 2025-06-05 05:23:58,954 | INFO     | process IDs to be killed: [570091] (in reverse order)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,121 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:24:12] 2025-06-05 05:23:59,142 | INFO     | did not find any defunct processes belonging to 570091
[2025-06-05 01:24:12] 2025-06-05 05:23:59,163 | INFO     | did not find any defunct processes belonging to 570091
[2025-06-05 01:24:12] 2025-06-05 05:23:59,163 | INFO     | ready for new job
[2025-06-05 01:24:12] 2025-06-05 05:23:59,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:24:12] 2025-06-05 05:23:59,166 | INFO     | **************************************
[2025-06-05 01:24:12] 2025-06-05 05:23:59,166 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:24:12] 2025-06-05 05:23:59,166 | INFO     | **************************************
[2025-06-05 01:24:12] 2025-06-05 05:23:59,166 | INFO     | 
[2025-06-05 01:24:12] 2025-06-05 05:23:59,184 | INFO     | architecture information:
[2025-06-05 01:24:12] 2025-06-05 05:23:59,184 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:24:12] 2025-06-05 05:23:59,200 | INFO     | cat /etc/os-release:
[2025-06-05 01:24:12] NAME="CentOS Linux"
[2025-06-05 01:24:12] VERSION="7 (Core)"
[2025-06-05 01:24:12] ID="centos"
[2025-06-05 01:24:12] ID_LIKE="rhel fedora"
[2025-06-05 01:24:12] VERSION_ID="7"
[2025-06-05 01:24:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:24:12] ANSI_COLOR="0;31"
[2025-06-05 01:24:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:24:12] HOME_URL="https://www.centos.org/"
[2025-06-05 01:24:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:24:12] 
[2025-06-05 01:24:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:24:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:24:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:24:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:24:12] 
[2025-06-05 01:24:12] 2025-06-05 05:23:59,200 | INFO     | **************************************
[2025-06-05 01:24:12] 2025-06-05 05:23:59,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-05 01:24:12] 2025-06-05 05:23:59,724 | INFO     | sufficient remaining disk space (76606865408 B)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:24:12] 2025-06-05 05:23:59,724 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:24:12] 2025-06-05 05:23:59,724 | INFO     | update_server=False
[2025-06-05 01:24:12] 2025-06-05 05:23:59,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,725 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,725 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:24:12] 2025-06-05 05:23:59,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:24:12] 2025-06-05 05:23:59,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:24:12] 2025-06-05 05:23:59,881 | INFO     | all job control threads have been joined
[2025-06-05 01:24:12] 2025-06-05 05:23:59,950 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 01:24:12] 2025-06-05 05:23:59,950 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 01:24:12] 2025-06-05 05:23:59,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:24:12] 2025-06-05 05:23:59,951 | INFO     | will abort loop
[2025-06-05 01:24:12] 2025-06-05 05:24:00,056 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:24:12] 2025-06-05 05:24:00,253 | INFO     | all payload control threads have been joined
[2025-06-05 01:24:12] 2025-06-05 05:24:00,410 | INFO     | all data control threads have been joined
[2025-06-05 01:24:12] 2025-06-05 05:24:00,729 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:00,757 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:00,884 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:00,886 | INFO     | [job] control thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:00,956 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,027 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:24:12] 2025-06-05 05:24:01,106 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,257 | INFO     | [payload] control thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,415 | INFO     | [data] control thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,420 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:01,969 | INFO     | [job] validate thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:02,023 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:02,061 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:02,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:02,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:24:12] 2025-06-05 05:24:03,429 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:05,035 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:24:12] 2025-06-05 05:24:07,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829723707200)>', '<ExcThread(monitor, started 139829450872576)>']
[2025-06-05 01:24:12] 2025-06-05 05:24:07,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:24:12] 2025-06-05 05:24:07,765 | INFO     | [monitor] control thread has ended
[2025-06-05 01:24:12] 2025-06-05 05:24:12,137 | INFO     | all workflow threads have been joined
[2025-06-05 01:24:12] 2025-06-05 05:24:12,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:24:12] 2025-06-05 05:24:12,138 | INFO     | traces error code: 0
[2025-06-05 01:24:12] 2025-06-05 05:24:12,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:24:12] 2025-06-05 05:24:12,263 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:24:12] 2025-06-05 05:24:12,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:24:12] 2025-06-05 05:24:12,269 [wrapper] pilotpid: 559989
[2025-06-05 01:24:12] 2025-06-05 05:24:12,274 [wrapper] Pilot exit status: 0
[2025-06-05 01:24:12] 2025-06-05 05:24:12,288 [wrapper] pandaids: 6668531617
[2025-06-05 01:24:12] 2025-06-05 05:24:12,411 [wrapper] cleanup supervisor_pilot 1360900 559990
[2025-06-05 01:24:12] 2025-06-05 05:24:12,416 [wrapper] Test setup, not cleaning
[2025-06-05 01:24:12] 2025-06-05 05:24:12,420 [wrapper] apfmon messages muted
[2025-06-05 01:24:12] 2025-06-05 05:24:12,423 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:24:12] 2025-06-05 05:24:12,427 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:24:12]  *** Error codes and diagnostics ***
[2025-06-05 01:24:12]     "exeErrorCode": 0,
[2025-06-05 01:24:12]     "exeErrorDiag": "",
[2025-06-05 01:24:12]     "pilotErrorCode": 0,
[2025-06-05 01:24:12]     "pilotErrorDiag": "",
[2025-06-05 01:24:12]  *** Listing of results directory ***
[2025-06-05 01:24:12] total 425340
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas    495897 May 28 09:51 pilot3.tar.gz
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas      5111 May 28 09:58 queuedata.json
[2025-06-05 01:24:12] -rwx------. 1 boincer umatlas     37140 May 28 10:00 runpilot2-wrapper.sh
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas       100 Jun  4 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:24:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 23:42 run_atlas
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas       105 Jun  4 23:42 job.xml
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas 226185072 Jun  4 23:42 EVNT.44871834._003329.pool.root.1
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:42 start_atlas.sh
[2025-06-05 01:24:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 23:42 shared
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 23:42 input.tar.gz
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas         0 Jun  4 23:42 boinc_lockfile
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 23:42 pandaJob.out
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas    987109 Jun  4 23:43 agis_schedconf.cvmfs.json
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas   1598969 Jun  4 23:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:24:12] drwx------. 4 boincer umatlas      4096 Jun  4 23:43 pilot3
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas      6934 Jun  5 01:18 init_data.xml
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas        95 Jun  5 01:23 pilot_heartbeat.json
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas       530 Jun  5 01:23 boinc_task_state.xml
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas 203767968 Jun  5 01:23 HITS.44871837._085374.pool.root.1
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas      1043 Jun  5 01:23 memory_monitor_summary.json
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas    314996 Jun  5 01:23 log.44871837._085374.job.log.tgz.1
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas      7687 Jun  5 01:23 heartbeat.json
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas        27 Jun  5 01:24 wrapper_checkpoint.txt
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas      4662 Jun  5 01:24 pilotlog.txt
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 01:24 boinc_mmap_file
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas    566807 Jun  5 01:24 log.44871837._085374.job.log.1
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas       357 Jun  5 01:24 output.list
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas       620 Jun  5 01:24 runtime_log
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas    901120 Jun  5 01:24 result.tar.gz
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas      8654 Jun  5 01:24 runtime_log.err
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas       653 Jun  5 01:24 1ciLDmGVWe7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3bTKDmdX4TKm.diag
[2025-06-05 01:24:12] -rw-r--r--. 1 boincer umatlas     21695 Jun  5 01:24 stderr.txt
[2025-06-05 01:24:12] HITS file was successfully produced:
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas 203767968 Jun  5 01:23 shared/HITS.pool.root.1
[2025-06-05 01:24:12]  *** Contents of shared directory: ***
[2025-06-05 01:24:12] total 421284
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas 226185072 Jun  4 23:42 ATLAS.root_0
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 23:42 start_atlas.sh
[2025-06-05 01:24:12] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 23:42 input.tar.gz
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas 203767968 Jun  5 01:23 HITS.pool.root.1
[2025-06-05 01:24:12] -rw-------. 1 boincer umatlas    901120 Jun  5 01:24 result.tar.gz
01:24:13 (554075): run_atlas exited; CPU time 42870.805863
01:24:13 (554075): called boinc_finish(0)

</stderr_txt>
]]>

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