Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:26:08 (28359): wrapper (7.7.26015): starting
06:26:08 (28359): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:26:08] Arguments: --nthreads 8
[2025-06-05 06:26:08] Threads: 8
[2025-06-05 06:26:08] Checking for CVMFS
[2025-06-05 06:26:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:26:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:26:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:26:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:26:10] 2.11.2.0 31633 34332 104464 146806 0 16 24078495 25165825 2360 130560 0 18575311 99.819 19250837 2159 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:26:10] CVMFS is ok
[2025-06-05 06:26:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:26:10] Checking for apptainer binary...
[2025-06-05 06:26:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:26:10] Running /usr/bin/apptainer --version
[2025-06-05 06:26:10] apptainer version 1.3.2-1.el7
[2025-06-05 06:26:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:26:20] cg-vwn483.simple-grid.lan
[2025-06-05 06:26:20] apptainer works
[2025-06-05 06:26:20] Set ATHENA_PROC_NUMBER=8
[2025-06-05 06:26:20] Set ATHENA_CORE_NUMBER=8
[2025-06-05 06:26:20] Starting ATLAS job with PandaID=6667666711
[2025-06-05 06:26:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:04:12]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:04:12] 2025-06-05 09:41:33,989 | INFO     | extracted standard info from prmon json
[2025-06-05 12:04:12] 2025-06-05 09:41:33,989 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:04:12] 2025-06-05 09:41:33,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:04:12] 2025-06-05 09:41:33,990 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:04:12] 2025-06-05 09:41:33,990 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:04:12] 2025-06-05 09:41:33,996 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:04:12] 2025-06-05 09:41:33,996 | INFO     | sum of square deviations: 8123493708.0
[2025-06-05 12:04:12] 2025-06-05 09:41:33,999 | INFO     | sum of deviations: 113353353639.0
[2025-06-05 12:04:12] 2025-06-05 09:41:33,999 | INFO     | mean x: 1749107326.0
[2025-06-05 12:04:12] 2025-06-05 09:41:33,999 | INFO     | mean y: 2453246.222222222
[2025-06-05 12:04:12] 2025-06-05 09:41:33,999 | INFO     | -- intersect: -24404186114.0558
[2025-06-05 12:04:12] 2025-06-05 09:41:33,999 | INFO     | intersect: -24404186114.0558
[2025-06-05 12:04:12] 2025-06-05 09:41:34,000 | INFO     | chi2: 7.593730171906848
[2025-06-05 12:04:12] 2025-06-05 09:41:34,000 | INFO     | sum of square deviations: 7720081493.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,013 | INFO     | sum of deviations: 131011392719.50002
[2025-06-05 12:04:12] 2025-06-05 09:41:34,013 | INFO     | mean x: 1749107173.5
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | mean y: 2459819.441780822
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | -- intersect: -29680253636.845196
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | intersect: -29680253636.845196
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | chi2: 6.877455225010002
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | current chi2=6.877455225010002 (change=9.432451913378733 %)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,014 | INFO     | right removable region: 291
[2025-06-05 12:04:12] 2025-06-05 09:41:34,015 | INFO     | sum of square deviations: 7720081493.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,017 | INFO     | sum of deviations: 6858659897.500004
[2025-06-05 12:04:12] 2025-06-05 09:41:34,017 | INFO     | mean x: 1749107478.5
[2025-06-05 12:04:12] 2025-06-05 09:41:34,018 | INFO     | mean y: 2493487.866438356
[2025-06-05 12:04:12] 2025-06-05 09:41:34,018 | INFO     | -- intersect: -1551445201.7811866
[2025-06-05 12:04:12] 2025-06-05 09:41:34,018 | INFO     | intersect: -1551445201.7811866
[2025-06-05 12:04:12] 2025-06-05 09:41:34,018 | INFO     | chi2: 2.531304373010082
[2025-06-05 12:04:12] 2025-06-05 09:41:34,018 | INFO     | current chi2=2.531304373010082 (change=66.66586360449452 %)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,019 | INFO     | sum of square deviations: 7330250928.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,021 | INFO     | sum of deviations: -48898003515.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,021 | INFO     | mean x: 1749107631.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,021 | INFO     | mean y: 2515211.4459930314
[2025-06-05 12:04:12] 2025-06-05 09:41:34,021 | INFO     | -- intersect: 11670311024.827093
[2025-06-05 12:04:12] 2025-06-05 09:41:34,021 | INFO     | intersect: 11670311024.827093
[2025-06-05 12:04:12] 2025-06-05 09:41:34,022 | INFO     | chi2: 0.9763279043855345
[2025-06-05 12:04:12] 2025-06-05 09:41:34,022 | INFO     | current chi2=0.9763279043855345 (change=61.42984957496276 %)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,022 | INFO     | sum of square deviations: 6953769450.5
[2025-06-05 12:04:12] 2025-06-05 09:41:34,025 | INFO     | sum of deviations: -50554783462.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,025 | INFO     | mean x: 1749107783.5
[2025-06-05 12:04:12] 2025-06-05 09:41:34,025 | INFO     | mean y: 2515853.9574468085
[2025-06-05 12:04:12] 2025-06-05 09:41:34,025 | INFO     | -- intersect: 12718750678.248775
[2025-06-05 12:04:12] 2025-06-05 09:41:34,025 | INFO     | intersect: 12718750678.248775
[2025-06-05 12:04:12] 2025-06-05 09:41:34,026 | INFO     | chi2: 0.9489483447523165
[2025-06-05 12:04:12] 2025-06-05 09:41:34,026 | INFO     | current chi2=0.9489483447523165 (change=2.804340581707509 %)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,026 | INFO     | left removable region: 30
[2025-06-05 12:04:12] 2025-06-05 09:41:34,026 | INFO     | sum of square deviations: 5513070810.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,028 | INFO     | sum of deviations: -3902464812.9999976
[2025-06-05 12:04:12] 2025-06-05 09:41:34,028 | INFO     | mean x: 1749108058.0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,028 | INFO     | mean y: 2511580.8735632184
[2025-06-05 12:04:12] 2025-06-05 09:41:34,028 | INFO     | -- intersect: 1240629661.6532586
[2025-06-05 12:04:12] 2025-06-05 09:41:34,029 | INFO     | intersect: 1240629661.6532586
[2025-06-05 12:04:12] 2025-06-05 09:41:34,029 | INFO     | chi2: 0.0719161326279313
[2025-06-05 12:04:12] 2025-06-05 09:41:34,029 | INFO     | -- intersect: 1240629661.6532586
[2025-06-05 12:04:12] 2025-06-05 09:41:34,029 | INFO     | current memory leak: -0.71 B/s (using 261 data points, chi2=0.07)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,030 | INFO     | ..............................
[2025-06-05 12:04:12] 2025-06-05 09:41:34,030 | INFO     | . Timing measurements:
[2025-06-05 12:04:12] 2025-06-05 09:41:34,030 | INFO     | . get job = 0 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,030 | INFO     | . initial setup = 9 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,030 | INFO     | . payload setup = 179 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,031 | INFO     | . stage-in = 0 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,031 | INFO     | . payload execution = 18252 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,031 | INFO     | . stage-out = 5 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,031 | INFO     | . log creation = 1 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,031 | INFO     | ..............................
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | 
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | job summary report
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | --------------------------------------------------
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | PanDA job id: 6667666711
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | task id: 44871837
[2025-06-05 12:04:12] 2025-06-05 09:41:34,170 | INFO     | errors: (none)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | pilot state: finished 
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | transexitcode: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | exeerrorcode: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | exeerrordiag: 
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | exitcode: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | exitmsg: OK
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | cpuconsumptiontime: 68404 s
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | nevents: 400
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | neventsw: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | pid: 13831
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | pgrp: 13831
[2025-06-05 12:04:12] 2025-06-05 09:41:34,171 | INFO     | corecount: 8
[2025-06-05 12:04:12] 2025-06-05 09:41:34,172 | INFO     | event service: False
[2025-06-05 12:04:12] 2025-06-05 09:41:34,172 | INFO     | sizes: {0: 2396563, 1: 2397249, 2: 2397448, 13: 2397448, 24: 2397504, 35: 2397532, 45: 2397688, 56: 2397716, 67: 2397744, 78: 2397772, 88: 2397828, 96: 2398342, 99
[2025-06-05 12:04:12] 2025-06-05 09:41:34,172 | INFO     | --------------------------------------------------
[2025-06-05 12:04:12] 2025-06-05 09:41:34,172 | INFO     | 
[2025-06-05 12:04:12] 2025-06-05 09:41:34,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-06-05 12:04:12] 2025-06-05 09:41:34,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:04:12] 2025-06-05 09:41:34,610 | INFO     | job 6667666711 has completed (purged errors)
[2025-06-05 12:04:12] 2025-06-05 09:41:34,611 | INFO     | overall cleanup function is called
[2025-06-05 12:04:12] 2025-06-05 09:41:35,620 | INFO     | --- collectZombieJob: --- 10, [13831]
[2025-06-05 12:04:12] 2025-06-05 09:41:35,620 | INFO     | zombie collector waiting for pid 13831
[2025-06-05 12:04:12] 2025-06-05 09:41:35,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:04:12] 2025-06-05 09:41:35,620 | INFO     | collected zombie processes
[2025-06-05 12:04:12] 2025-06-05 09:41:35,621 | INFO     | will attempt to kill all subprocesses of pid=13831
[2025-06-05 12:04:12] 2025-06-05 09:41:35,752 | INFO     | process IDs to be killed: [13831] (in reverse order)
[2025-06-05 12:04:12] 2025-06-05 09:41:36,604 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:04:12] 2025-06-05 09:41:36,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:04:12] 2025-06-05 09:41:36,608 | INFO     | did not find any defunct processes belonging to 13831
[2025-06-05 12:04:12] 2025-06-05 09:41:36,612 | INFO     | did not find any defunct processes belonging to 13831
[2025-06-05 12:04:12] 2025-06-05 09:41:36,612 | INFO     | ready for new job
[2025-06-05 12:04:12] 2025-06-05 09:41:36,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:04:12] 2025-06-05 09:41:36,614 | INFO     | **************************************
[2025-06-05 12:04:12] 2025-06-05 09:41:36,615 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:04:12] 2025-06-05 09:41:36,615 | INFO     | **************************************
[2025-06-05 12:04:12] 2025-06-05 09:41:36,615 | INFO     | 
[2025-06-05 12:04:12] 2025-06-05 09:41:36,615 | INFO     | pilot is running in a VM
[2025-06-05 12:04:12] 2025-06-05 09:41:36,616 | INFO     | architecture information:
[2025-06-05 12:04:12] 2025-06-05 09:41:36,625 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:04:12] 2025-06-05 09:41:36,837 | INFO     | cat /etc/os-release:
[2025-06-05 12:04:12] NAME="CentOS Linux"
[2025-06-05 12:04:12] VERSION="7 (Core)"
[2025-06-05 12:04:12] ID="centos"
[2025-06-05 12:04:12] ID_LIKE="rhel fedora"
[2025-06-05 12:04:12] VERSION_ID="7"
[2025-06-05 12:04:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:04:12] ANSI_COLOR="0;31"
[2025-06-05 12:04:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:04:12] HOME_URL="https://www.centos.org/"
[2025-06-05 12:04:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:04:12] 
[2025-06-05 12:04:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:04:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:04:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:04:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:04:12] 
[2025-06-05 12:04:12] 2025-06-05 09:41:36,838 | INFO     | **************************************
[2025-06-05 12:04:12] 2025-06-05 09:41:37,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-06-05 12:04:12] 2025-06-05 09:41:37,638 | INFO     | sufficient remaining disk space (497617469440 B)
[2025-06-05 12:04:12] 2025-06-05 09:41:37,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:04:12] 2025-06-05 09:41:37,638 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:04:12] 2025-06-05 09:41:37,638 | INFO     | update_server=False
[2025-06-05 12:04:12] 2025-06-05 09:41:37,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:04:12] 2025-06-05 09:41:37,639 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:04:12] 2025-06-05 09:41:37,639 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:04:12] 2025-06-05 09:41:37,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:04:12] 2025-06-05 09:41:37,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:04:12] 2025-06-05 09:41:37,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:04:12] 2025-06-05 09:41:37,642 | INFO     | aborting loop
[2025-06-05 12:04:12] 2025-06-05 09:41:38,144 | INFO     | all data control threads have been joined
[2025-06-05 12:04:12] 2025-06-05 09:41:38,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:04:12] 2025-06-05 09:41:38,645 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,651 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,705 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,793 | INFO     | all job control threads have been joined
[2025-06-05 12:04:12] 2025-06-05 09:41:38,807 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,935 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,944 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:38,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:04:12] 2025-06-05 09:41:39,036 | INFO     | all payload control threads have been joined
[2025-06-05 12:04:12] 2025-06-05 09:41:39,150 | INFO     | [data] control thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:39,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:04:12] 2025-06-05 09:41:39,696 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:39,776 | INFO     | [job] validate thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:39,800 | INFO     | [job] control thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:39,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:39,915 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:40,042 | INFO     | [payload] control thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:40,192 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:40,601 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:42,997 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:04:12] 2025-06-05 09:41:43,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140236135417664)>', '<ExcThread(monitor, started 140235564373760)>']
[2025-06-05 12:04:12] 2025-06-05 09:41:43,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:04:12] 2025-06-05 09:41:43,678 | INFO     | [monitor] control thread has ended
[2025-06-05 12:04:12] 2025-06-05 09:41:48,489 | INFO     | all workflow threads have been joined
[2025-06-05 12:04:12] 2025-06-05 09:41:48,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:04:12] 2025-06-05 09:41:48,489 | INFO     | traces error code: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:48,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:04:12] 2025-06-05 09:41:48,902 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:04:12] 2025-06-05 09:41:49,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:04:12] 2025-06-05 09:41:49,111 [wrapper] pilotpid: 5225
[2025-06-05 12:04:12] 2025-06-05 09:41:49,227 [wrapper] Pilot exit status: 0
[2025-06-05 12:04:12] 2025-06-05 09:41:49,730 [wrapper] pandaids: 6667666711
[2025-06-05 12:04:12] 2025-06-05 09:41:50,674 [wrapper] cleanup supervisor_pilot  2179 5226
[2025-06-05 12:04:12] 2025-06-05 09:41:50,730 [wrapper] Test setup, not cleaning
[2025-06-05 12:04:12] 2025-06-05 09:41:50,775 [wrapper] apfmon messages muted
[2025-06-05 12:04:12] 2025-06-05 09:41:50,831 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:04:12] 2025-06-05 09:41:50,940 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:04:12]  *** Error codes and diagnostics ***
[2025-06-05 12:04:12]     "exeErrorCode": 0,
[2025-06-05 12:04:12]     "exeErrorDiag": "",
[2025-06-05 12:04:12]     "pilotErrorCode": 0,
[2025-06-05 12:04:12]     "pilotErrorDiag": "",
[2025-06-05 12:04:12]  *** Listing of results directory ***
[2025-06-05 12:04:12] total 425992
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc    495897 May 27 23:39 pilot3.tar.gz
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc      5111 May 27 23:40 queuedata.json
[2025-06-05 12:04:12] -rwx------. 1 boinc boinc     37140 May 27 23:42 runpilot2-wrapper.sh
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:04:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:26 run_atlas
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:26 job.xml
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc      6393 Jun  5 06:26 init_data.xml
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc 224367779 Jun  5 06:26 EVNT.44871834._002893.pool.root.1
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:26 start_atlas.sh
[2025-06-05 12:04:12] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:26 shared
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc    508879 Jun  5 06:26 input.tar.gz
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:26 boinc_lockfile
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc      2558 Jun  5 06:26 pandaJob.out
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc    987109 Jun  5 06:29 agis_schedconf.cvmfs.json
[2025-06-05 12:04:12] drwx------. 4 boinc boinc      4096 Jun  5 06:29 pilot3
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc 203986392 Jun  5 11:38 HITS.44871837._073817.pool.root.1
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc       531 Jun  5 11:38 boinc_task_state.xml
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc      1015 Jun  5 11:39 memory_monitor_summary.json
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc   1598969 Jun  5 11:40 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc    437315 Jun  5 11:40 log.44871837._073817.job.log.tgz.1
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc        95 Jun  5 11:40 pilot_heartbeat.json
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc      7689 Jun  5 11:41 heartbeat.json
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc      4540 Jun  5 11:41 pilotlog.txt
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc   1585460 Jun  5 11:41 log.44871837._073817.job.log.1
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc       357 Jun  5 11:41 output.list
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc       620 Jun  5 11:41 runtime_log
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc   2037760 Jun  5 11:41 result.tar.gz
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc      8673 Jun  5 11:41 runtime_log.err
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc       657 Jun  5 11:41 0ljLDm1EHe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKSaKDmYCZMzn.diag
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:04 boinc_mmap_file
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:04 wrapper_checkpoint.txt
[2025-06-05 12:04:12] -rw-r--r--. 1 boinc boinc     20512 Jun  5 12:04 stderr.txt
[2025-06-05 12:04:12] HITS file was successfully produced:
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc 203986392 Jun  5 11:38 shared/HITS.pool.root.1
[2025-06-05 12:04:12]  *** Contents of shared directory: ***
[2025-06-05 12:04:12] total 420828
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc 224367779 Jun  5 06:26 ATLAS.root_0
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:26 start_atlas.sh
[2025-06-05 12:04:12] -rw-r--r--. 2 boinc boinc    508879 Jun  5 06:26 input.tar.gz
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc 203986392 Jun  5 11:38 HITS.pool.root.1
[2025-06-05 12:04:12] -rw-------. 1 boinc boinc   2037760 Jun  5 11:41 result.tar.gz
12:04:14 (28359): run_atlas exited; CPU time 68634.555206
12:04:14 (28359): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN