Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:25:50 (2821): wrapper (7.7.26015): starting
23:25:50 (2821): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 23:25:50] Arguments: --nthreads 12
[2025-06-04 23:25:50] Threads: 12
[2025-06-04 23:25:50] Checking for CVMFS
[2025-06-04 23:25:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:25:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:25:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:25:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:25:51] 2.11.2.0 2984 36533 87456 146804 2 1 17764023 20275200 1 130560 0 16564135 99.983 6615002 8023 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 23:25:51] CVMFS is ok
[2025-06-04 23:25:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:25:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:25:51] Further information can be found at the LHC@home message board.
[2025-06-04 23:25:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:25:51] Checking for apptainer binary...
[2025-06-04 23:25:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:25:51] Running /usr/bin/apptainer --version
[2025-06-04 23:25:51] apptainer version 1.3.2-1.el7
[2025-06-04 23:25:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:25:52] c-205-26.aglt2.org
[2025-06-04 23:25:52] apptainer works
[2025-06-04 23:25:52] Set ATHENA_PROC_NUMBER=12
[2025-06-04 23:25:52] Set ATHENA_CORE_NUMBER=12
[2025-06-04 23:25:52] Starting ATLAS job with PandaID=6680346246
[2025-06-04 23:25:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:31:10]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:31:10]  guid=839007d8-823f-482d-ad3a-9920ff2683bb
[2025-06-05 00:31:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 00:31:10]  is_altstaged=None
[2025-06-05 00:31:10]  is_tar=False
[2025-06-05 00:31:10]  lfn=log.45006595._057032.job.log.tgz.1
[2025-06-05 00:31:10]  mtime=0
[2025-06-05 00:31:10]  protocol_id=None
[2025-06-05 00:31:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 00:31:10]  replicas=None
[2025-06-05 00:31:10]  scope=mc23_13p6TeV
[2025-06-05 00:31:10]  status=None
[2025-06-05 00:31:10]  status_code=0
[2025-06-05 00:31:10]  storage_token=
[2025-06-05 00:31:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6680346246/log.45006595._057032.job.log.tgz.1
[2025-06-05 00:31:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/4d/log.45006595._057032.job.log.tgz.1
[2025-06-05 00:31:10]  workdir=None
[2025-06-05 00:31:10] ]
[2025-06-05 00:31:10] 2025-06-05 04:30:42,377 | INFO     | transferring file log.45006595._057032.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6680346246/log.45006595._057032.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 00:31:10] 2025-06-05 04:30:42,378 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6680346246/log.45006595._057032.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057032.job
[2025-06-05 00:31:10] 2025-06-05 04:30:42,398 | INFO     | adding to output.list: log.45006595._057032.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/4d/log.45006595._057032.job.log.tg
[2025-06-05 00:31:10] 2025-06-05 04:30:42,399 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 00:31:10] 2025-06-05 04:30:42,399 | INFO     | summary of transferred files:
[2025-06-05 00:31:10] 2025-06-05 04:30:42,399 | INFO     |  -- lfn=log.45006595._057032.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 00:31:10] 2025-06-05 04:30:42,399 | INFO     | stage-out finished correctly
[2025-06-05 00:31:10] 2025-06-05 04:30:43,705 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 00:31:10] 2025-06-05 04:30:44,523 | INFO     | monitor loop #291: job 0:6680346246 is in state 'finished'
[2025-06-05 00:31:10] 2025-06-05 04:30:44,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:31:10] 2025-06-05 04:30:44,762 | INFO     | job 6680346246 has state=finished
[2025-06-05 00:31:10] 2025-06-05 04:30:44,762 | INFO     | preparing for final server update for job 6680346246 in state='finished'
[2025-06-05 00:31:10] 2025-06-05 04:30:44,763 | INFO     | this job has now completed (state=finished)
[2025-06-05 00:31:10] 2025-06-05 04:30:44,763 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 00:31:10] 2025-06-05 04:30:44,763 | INFO     | log transfer has been attempted: DONE
[2025-06-05 00:31:10] 2025-06-05 04:30:44,764 | INFO     | job 6680346246 has finished - writing final server update
[2025-06-05 00:31:10] 2025-06-05 04:30:44,764 | INFO     | total number of processed events: 400 (read)
[2025-06-05 00:31:10] 2025-06-05 04:30:44,766 | INFO     | executing command: lscpu
[2025-06-05 00:31:10] 2025-06-05 04:30:44,791 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 00:31:10] 2025-06-05 04:30:44,944 | INFO     | PID=7253 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 00:31:10] 2025-06-05 04:30:47,027 | INFO     | monitor loop #292: job 0:6680346246 is in state 'finished'
[2025-06-05 00:31:10] 2025-06-05 04:30:47,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,392 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-05 00:31:10] 2025-06-05 04:30:49,392 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680346246/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,393 | INFO     | extracted standard info from prmon json
[2025-06-05 00:31:10] 2025-06-05 04:30:49,393 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:31:10] 2025-06-05 04:30:49,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:31:10] 2025-06-05 04:30:49,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:31:10] 2025-06-05 04:30:49,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:31:10] 2025-06-05 04:30:49,396 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:31:10] 2025-06-05 04:30:49,396 | INFO     | sum of square deviations: 54438230.0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,396 | INFO     | sum of deviations: -5062364136.0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,396 | INFO     | mean x: 1749095981.5
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | mean y: 2813733.8571428573
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | -- intersect: 162656169053.5896
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | intersect: 162656169053.5896
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | chi2: 0.08426168763630644
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | -- intersect: 162656169053.5896
[2025-06-05 00:31:10] 2025-06-05 04:30:49,397 | INFO     | current memory leak: -92.99 B/s (using 56 data points, chi2=0.08)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | ..............................
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . Timing measurements:
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . get job = 0 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . initial setup = 2 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . payload setup = 9 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . stage-in = 0 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . payload execution = 3843 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . stage-out = 0 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | . log creation = 0 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,398 | INFO     | ..............................
[2025-06-05 00:31:10] 2025-06-05 04:30:49,647 | INFO     | 
[2025-06-05 00:31:10] 2025-06-05 04:30:49,648 | INFO     | job summary report
[2025-06-05 00:31:10] 2025-06-05 04:30:49,648 | INFO     | --------------------------------------------------
[2025-06-05 00:31:10] 2025-06-05 04:30:49,648 | INFO     | PanDA job id: 6680346246
[2025-06-05 00:31:10] 2025-06-05 04:30:49,648 | INFO     | task id: 45006595
[2025-06-05 00:31:10] 2025-06-05 04:30:49,648 | INFO     | errors: (none)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | pilot state: finished 
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | transexitcode: 0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | exeerrorcode: 0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | exeerrordiag: 
[2025-06-05 00:31:10] 2025-06-05 04:30:49,649 | INFO     | exitcode: 0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | exitmsg: OK
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | cpuconsumptiontime: 40520 s
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | nevents: 400
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | neventsw: 0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | pid: 14060
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | pgrp: 14060
[2025-06-05 00:31:10] 2025-06-05 04:30:49,650 | INFO     | corecount: 12
[2025-06-05 00:31:10] 2025-06-05 04:30:49,651 | INFO     | event service: False
[2025-06-05 00:31:10] 2025-06-05 04:30:49,651 | INFO     | sizes: {0: 2397114, 1: 2397313, 6: 2397519, 11: 2397547, 3857: 2423225, 3858: 2423224, 3859: 2432349, 3860: 2432405, 3866: 2432575}
[2025-06-05 00:31:10] 2025-06-05 04:30:49,651 | INFO     | --------------------------------------------------
[2025-06-05 00:31:10] 2025-06-05 04:30:49,651 | INFO     | 
[2025-06-05 00:31:10] 2025-06-05 04:30:49,651 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 00:31:10] 2025-06-05 04:30:49,674 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:31:10] 2025-06-05 04:30:49,677 | INFO     | job 6680346246 has completed (purged errors)
[2025-06-05 00:31:10] 2025-06-05 04:30:49,678 | INFO     | overall cleanup function is called
[2025-06-05 00:31:10] 2025-06-05 04:30:50,682 | INFO     | --- collectZombieJob: --- 10, [14060]
[2025-06-05 00:31:10] 2025-06-05 04:30:50,683 | INFO     | zombie collector waiting for pid 14060
[2025-06-05 00:31:10] 2025-06-05 04:30:50,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:31:10] 2025-06-05 04:30:50,683 | INFO     | collected zombie processes
[2025-06-05 00:31:10] 2025-06-05 04:30:50,683 | INFO     | will attempt to kill all subprocesses of pid=14060
[2025-06-05 00:31:10] 2025-06-05 04:30:50,772 | INFO     | process IDs to be killed: [14060] (in reverse order)
[2025-06-05 00:31:10] 2025-06-05 04:30:50,822 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:31:10] 2025-06-05 04:30:50,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:31:10] 2025-06-05 04:30:50,826 | INFO     | did not find any defunct processes belonging to 14060
[2025-06-05 00:31:10] 2025-06-05 04:30:50,828 | INFO     | did not find any defunct processes belonging to 14060
[2025-06-05 00:31:10] 2025-06-05 04:30:50,829 | INFO     | ready for new job
[2025-06-05 00:31:10] 2025-06-05 04:30:50,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:31:10] 2025-06-05 04:30:50,830 | INFO     | **************************************
[2025-06-05 00:31:10] 2025-06-05 04:30:50,830 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:31:10] 2025-06-05 04:30:50,830 | INFO     | **************************************
[2025-06-05 00:31:10] 2025-06-05 04:30:50,830 | INFO     | 
[2025-06-05 00:31:10] 2025-06-05 04:30:50,831 | INFO     | architecture information:
[2025-06-05 00:31:10] 2025-06-05 04:30:50,831 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:31:10] 2025-06-05 04:30:50,845 | INFO     | cat /etc/os-release:
[2025-06-05 00:31:10] NAME="CentOS Linux"
[2025-06-05 00:31:10] VERSION="7 (Core)"
[2025-06-05 00:31:10] ID="centos"
[2025-06-05 00:31:10] ID_LIKE="rhel fedora"
[2025-06-05 00:31:10] VERSION_ID="7"
[2025-06-05 00:31:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:31:10] ANSI_COLOR="0;31"
[2025-06-05 00:31:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:31:10] HOME_URL="https://www.centos.org/"
[2025-06-05 00:31:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:31:10] 
[2025-06-05 00:31:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:31:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:31:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:31:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:31:10] 
[2025-06-05 00:31:10] 2025-06-05 04:30:50,845 | INFO     | **************************************
[2025-06-05 00:31:10] 2025-06-05 04:30:51,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 00:31:10] 2025-06-05 04:30:51,364 | INFO     | sufficient remaining disk space (29415702528 B)
[2025-06-05 00:31:10] 2025-06-05 04:30:51,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:31:10] 2025-06-05 04:30:51,365 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:31:10] 2025-06-05 04:30:51,365 | INFO     | update_server=False
[2025-06-05 00:31:10] 2025-06-05 04:30:51,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:31:10] 2025-06-05 04:30:51,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:31:10] 2025-06-05 04:30:51,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:31:10] 2025-06-05 04:30:51,366 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 00:31:10] 2025-06-05 04:30:51,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:31:10] 2025-06-05 04:30:51,367 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:31:10] 2025-06-05 04:30:51,367 | INFO     | aborting loop
[2025-06-05 00:31:10] 2025-06-05 04:30:51,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:31:10] 2025-06-05 04:30:51,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:31:10] 2025-06-05 04:30:51,384 | INFO     | all data control threads have been joined
[2025-06-05 00:31:10] 2025-06-05 04:30:51,974 | INFO     | all job control threads have been joined
[2025-06-05 00:31:10] 2025-06-05 04:30:52,317 | INFO     | all payload control threads have been joined
[2025-06-05 00:31:10] 2025-06-05 04:30:52,370 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,371 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,371 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,387 | INFO     | [data] control thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,670 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,700 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:52,980 | INFO     | [job] control thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,042 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,242 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,322 | INFO     | [payload] control thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,368 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,635 | INFO     | [job] validate thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,738 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:53,848 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:30:54,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:31:10] 2025-06-05 04:30:58,302 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:31:02,160 | INFO     | job.realtimelogging is not enabled
[2025-06-05 00:31:10] 2025-06-05 04:31:03,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:31:10] 2025-06-05 04:31:05,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781975508800)>', '<ExcThread(monitor, started 139781296080640)>']
[2025-06-05 00:31:10] 2025-06-05 04:31:05,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:31:10] 2025-06-05 04:31:05,434 | INFO     | [monitor] control thread has ended
[2025-06-05 00:31:10] 2025-06-05 04:31:10,231 | INFO     | all workflow threads have been joined
[2025-06-05 00:31:10] 2025-06-05 04:31:10,231 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:31:10] 2025-06-05 04:31:10,235 | INFO     | traces error code: 0
[2025-06-05 00:31:10] 2025-06-05 04:31:10,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:31:10] 2025-06-05 04:31:10,318 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:31:10] 2025-06-05 04:31:10,322 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:31:10] 2025-06-05 04:31:10,326 [wrapper] pilotpid: 7253
[2025-06-05 00:31:10] 2025-06-05 04:31:10,329 [wrapper] Pilot exit status: 0
[2025-06-05 00:31:10] 2025-06-05 04:31:10,344 [wrapper] pandaids: 6680346246
[2025-06-05 00:31:10] 2025-06-05 04:31:10,382 [wrapper] cleanup supervisor_pilot 26459 7255
[2025-06-05 00:31:10] 2025-06-05 04:31:10,386 [wrapper] Test setup, not cleaning
[2025-06-05 00:31:10] 2025-06-05 04:31:10,390 [wrapper] apfmon messages muted
[2025-06-05 00:31:10] 2025-06-05 04:31:10,393 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:31:10] 2025-06-05 04:31:10,397 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:31:10]  *** Error codes and diagnostics ***
[2025-06-05 00:31:10]     "exeErrorCode": 0,
[2025-06-05 00:31:10]     "exeErrorDiag": "",
[2025-06-05 00:31:10]     "pilotErrorCode": 0,
[2025-06-05 00:31:10]     "pilotErrorDiag": "",
[2025-06-05 00:31:10]  *** Listing of results directory ***
[2025-06-05 00:31:10] total 393060
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 23:16 pilot3.tar.gz
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 23:24 queuedata.json
[2025-06-05 00:31:10] -rwx------ 1 boincer umatlas     37140 Jun  4 23:25 runpilot2-wrapper.sh
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas       100 Jun  4 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:31:10] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 23:25 run_atlas
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas       105 Jun  4 23:25 job.xml
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas 217989056 Jun  4 23:25 EVNT.45006593._000157.pool.root.1
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 23:25 start_atlas.sh
[2025-06-05 00:31:10] drwxrwx--x 2 boincer umatlas      4096 Jun  4 23:25 shared
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 23:25 input.tar.gz
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas         0 Jun  4 23:25 boinc_lockfile
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas      2521 Jun  4 23:25 pandaJob.out
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas    987109 Jun  4 23:26 agis_schedconf.cvmfs.json
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas   1598969 Jun  4 23:26 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:31:10] drwx------ 4 boincer umatlas      4096 Jun  4 23:26 pilot3
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas      5868 Jun  5 00:27 init_data.xml
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas        95 Jun  5 00:29 pilot_heartbeat.json
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas 179180491 Jun  5 00:30 HITS.45006595._057032.pool.root.1
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas      1047 Jun  5 00:30 memory_monitor_summary.json
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas    366723 Jun  5 00:30 log.45006595._057032.job.log.tgz.1
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 00:30 boinc_mmap_file
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas        27 Jun  5 00:30 wrapper_checkpoint.txt
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas       529 Jun  5 00:30 boinc_task_state.xml
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas      7747 Jun  5 00:30 heartbeat.json
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas      4548 Jun  5 00:31 pilotlog.txt
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas    379588 Jun  5 00:31 log.45006595._057032.job.log.1
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas       357 Jun  5 00:31 output.list
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas       620 Jun  5 00:31 runtime_log
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas    768000 Jun  5 00:31 result.tar.gz
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas      8661 Jun  5 00:31 runtime_log.err
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas       659 Jun  5 00:31 NFTMDmRPGh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ4nKDmWDj3Ho.diag
[2025-06-05 00:31:10] -rw-r--r-- 1 boincer umatlas     21380 Jun  5 00:31 stderr.txt
[2025-06-05 00:31:10] HITS file was successfully produced:
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas 179180491 Jun  5 00:30 shared/HITS.pool.root.1
[2025-06-05 00:31:10]  *** Contents of shared directory: ***
[2025-06-05 00:31:10] total 389136
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas 217989056 Jun  4 23:25 ATLAS.root_0
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 23:25 start_atlas.sh
[2025-06-05 00:31:10] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 23:25 input.tar.gz
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas 179180491 Jun  5 00:30 HITS.pool.root.1
[2025-06-05 00:31:10] -rw------- 1 boincer umatlas    768000 Jun  5 00:31 result.tar.gz
00:31:12 (2821): run_atlas exited; CPU time 40486.929945
00:31:12 (2821): called boinc_finish(0)

</stderr_txt>
]]>

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