Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:11 (17832): wrapper (7.7.26015): starting
05:24:11 (17832): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 05:24:11] Arguments: --nthreads 8
[2025-06-05 05:24:11] Threads: 8
[2025-06-05 05:24:11] Checking for CVMFS
[2025-06-05 05:24:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:24:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:24:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:24:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:24:12] 2.11.2.0 785 34098 93924 146804 1 168 18419739 25165824 2936 130560 0 17665145 99.799 20214500 2213 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 05:24:12] CVMFS is ok
[2025-06-05 05:24:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:24:12] Checking for apptainer binary...
[2025-06-05 05:24:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:24:12] Running /usr/bin/apptainer --version
[2025-06-05 05:24:13] apptainer version 1.3.2-1.el7
[2025-06-05 05:24:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:24:15] cg-vwn255.simple-grid.lan
[2025-06-05 05:24:15] apptainer works
[2025-06-05 05:24:15] Set ATHENA_PROC_NUMBER=8
[2025-06-05 05:24:15] Set ATHENA_CORE_NUMBER=8
[2025-06-05 05:24:15] Starting ATLAS job with PandaID=6667666682
[2025-06-05 05:24:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:01:15]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:01:15] 2025-06-05 08:38:14,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:01:15] 2025-06-05 08:38:14,380 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:01:15] 2025-06-05 08:38:14,381 | INFO     | sum of square deviations: 8797783560.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,384 | INFO     | sum of deviations: 44662658773.99998
[2025-06-05 11:01:15] 2025-06-05 08:38:14,385 | INFO     | mean x: 1749103280.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,385 | INFO     | mean y: 2478650.6098360657
[2025-06-05 11:01:15] 2025-06-05 08:38:14,385 | INFO     | -- intersect: -8876985412.396067
[2025-06-05 11:01:15] 2025-06-05 08:38:14,385 | INFO     | intersect: -8876985412.396067
[2025-06-05 11:01:15] 2025-06-05 08:38:14,386 | INFO     | chi2: 5.15803834516112
[2025-06-05 11:01:15] 2025-06-05 08:38:14,386 | INFO     | sum of square deviations: 8372156975.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,389 | INFO     | sum of deviations: 64065339334.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,389 | INFO     | mean x: 1749103127.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,389 | INFO     | mean y: 2485505.9366666665
[2025-06-05 11:01:15] 2025-06-05 08:38:14,390 | INFO     | -- intersect: -13381984676.470863
[2025-06-05 11:01:15] 2025-06-05 08:38:14,390 | INFO     | intersect: -13381984676.470863
[2025-06-05 11:01:15] 2025-06-05 08:38:14,390 | INFO     | chi2: 4.413929575357038
[2025-06-05 11:01:15] 2025-06-05 08:38:14,390 | INFO     | current chi2=4.413929575357038 (change=14.426196937875579 %)
[2025-06-05 11:01:15] 2025-06-05 08:38:14,390 | INFO     | right removable region: 299
[2025-06-05 11:01:15] 2025-06-05 08:38:14,391 | INFO     | sum of square deviations: 8372156975.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,394 | INFO     | sum of deviations: -51579444839.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,394 | INFO     | mean x: 1749103432.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,394 | INFO     | mean y: 2513083.803333333
[2025-06-05 11:01:15] 2025-06-05 08:38:14,394 | INFO     | -- intersect: 10778443860.61654
[2025-06-05 11:01:15] 2025-06-05 08:38:14,394 | INFO     | intersect: 10778443860.61654
[2025-06-05 11:01:15] 2025-06-05 08:38:14,395 | INFO     | chi2: 1.3567204560077855
[2025-06-05 11:01:15] 2025-06-05 08:38:14,395 | INFO     | current chi2=1.3567204560077855 (change=73.69696839728697 %)
[2025-06-05 11:01:15] 2025-06-05 08:38:14,396 | INFO     | sum of square deviations: 7960484140.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,398 | INFO     | sum of deviations: -73336076604.00002
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | mean x: 1749103585.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | mean y: 2521081.8508474575
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | -- intersect: 16116163448.56889
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | intersect: 16116163448.56889
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | chi2: 1.0011944014614493
[2025-06-05 11:01:15] 2025-06-05 08:38:14,399 | INFO     | current chi2=1.0011944014614493 (change=26.204812713776608 %)
[2025-06-05 11:01:15] 2025-06-05 08:38:14,400 | INFO     | sum of square deviations: 7562532492.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,403 | INFO     | sum of deviations: -68244741707.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,403 | INFO     | mean x: 1749103737.5
[2025-06-05 11:01:15] 2025-06-05 08:38:14,403 | INFO     | mean y: 2519115.920689655
[2025-06-05 11:01:15] 2025-06-05 08:38:14,403 | INFO     | -- intersect: 15786534973.530624
[2025-06-05 11:01:15] 2025-06-05 08:38:14,403 | INFO     | intersect: 15786534973.530624
[2025-06-05 11:01:15] 2025-06-05 08:38:14,404 | INFO     | chi2: 0.9909355584441364
[2025-06-05 11:01:15] 2025-06-05 08:38:14,404 | INFO     | current chi2=0.9909355584441364 (change=1.024660445797345 %)
[2025-06-05 11:01:15] 2025-06-05 08:38:14,404 | INFO     | left removable region: 30
[2025-06-05 11:01:15] 2025-06-05 08:38:14,405 | INFO     | sum of square deviations: 6035722470.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,407 | INFO     | sum of deviations: -19460063108.000008
[2025-06-05 11:01:15] 2025-06-05 08:38:14,407 | INFO     | mean x: 1749104012.0
[2025-06-05 11:01:15] 2025-06-05 08:38:14,407 | INFO     | mean y: 2514884.1301115244
[2025-06-05 11:01:15] 2025-06-05 08:38:14,407 | INFO     | -- intersect: 5641885253.652089
[2025-06-05 11:01:15] 2025-06-05 08:38:14,408 | INFO     | intersect: 5641885253.652089
[2025-06-05 11:01:15] 2025-06-05 08:38:14,408 | INFO     | chi2: 0.12811852260039822
[2025-06-05 11:01:15] 2025-06-05 08:38:14,408 | INFO     | -- intersect: 5641885253.652089
[2025-06-05 11:01:15] 2025-06-05 08:38:14,408 | INFO     | current memory leak: -3.22 B/s (using 269 data points, chi2=0.13)
[2025-06-05 11:01:15] 2025-06-05 08:38:14,409 | INFO     | ..............................
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . Timing measurements:
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . get job = 0 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . initial setup = 2 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . payload setup = 27 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . stage-in = 0 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . payload execution = 18661 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . stage-out = 3 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | . log creation = 1 s
[2025-06-05 11:01:15] 2025-06-05 08:38:14,410 | INFO     | ..............................
[2025-06-05 11:01:15] 2025-06-05 08:38:15,026 | INFO     | 
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | job summary report
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | --------------------------------------------------
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | PanDA job id: 6667666682
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | task id: 44871837
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | errors: (none)
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | pilot state: finished 
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | transexitcode: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:15,027 | INFO     | exeerrorcode: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | exeerrordiag: 
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | exitcode: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | exitmsg: OK
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | cpuconsumptiontime: 71300 s
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | nevents: 400
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | neventsw: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | pid: 9456
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | pgrp: 9456
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | corecount: 8
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | event service: False
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | sizes: {0: 2397221, 1: 2397420, 11: 2397626, 12: 2397654, 18693: 2429396, 18697: 2438337, 18700: 2438521, 18781: 2438691}
[2025-06-05 11:01:15] 2025-06-05 08:38:15,028 | INFO     | --------------------------------------------------
[2025-06-05 11:01:15] 2025-06-05 08:38:15,029 | INFO     | 
[2025-06-05 11:01:15] 2025-06-05 08:38:15,029 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 11:01:15] 2025-06-05 08:38:15,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,651 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,651 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | job 6667666682 has completed (purged errors)
[2025-06-05 11:01:15] 2025-06-05 08:38:15,653 | INFO     | overall cleanup function is called
[2025-06-05 11:01:15] 2025-06-05 08:38:16,662 | INFO     | --- collectZombieJob: --- 10, [9456]
[2025-06-05 11:01:15] 2025-06-05 08:38:16,663 | INFO     | zombie collector waiting for pid 9456
[2025-06-05 11:01:15] 2025-06-05 08:38:16,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:01:15] 2025-06-05 08:38:16,663 | INFO     | collected zombie processes
[2025-06-05 11:01:15] 2025-06-05 08:38:16,663 | INFO     | will attempt to kill all subprocesses of pid=9456
[2025-06-05 11:01:15] 2025-06-05 08:38:16,792 | INFO     | process IDs to be killed: [9456] (in reverse order)
[2025-06-05 11:01:15] 2025-06-05 08:38:17,626 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:01:15] 2025-06-05 08:38:17,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:01:15] 2025-06-05 08:38:17,630 | INFO     | did not find any defunct processes belonging to 9456
[2025-06-05 11:01:15] 2025-06-05 08:38:17,633 | INFO     | did not find any defunct processes belonging to 9456
[2025-06-05 11:01:15] 2025-06-05 08:38:17,634 | INFO     | ready for new job
[2025-06-05 11:01:15] 2025-06-05 08:38:17,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:01:15] 2025-06-05 08:38:17,641 | INFO     | **************************************
[2025-06-05 11:01:15] 2025-06-05 08:38:17,641 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:01:15] 2025-06-05 08:38:17,641 | INFO     | **************************************
[2025-06-05 11:01:15] 2025-06-05 08:38:17,641 | INFO     | 
[2025-06-05 11:01:15] 2025-06-05 08:38:17,642 | INFO     | pilot is running in a VM
[2025-06-05 11:01:15] 2025-06-05 08:38:17,642 | INFO     | architecture information:
[2025-06-05 11:01:15] 2025-06-05 08:38:17,651 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:01:15] 2025-06-05 08:38:17,908 | INFO     | cat /etc/os-release:
[2025-06-05 11:01:15] NAME="CentOS Linux"
[2025-06-05 11:01:15] VERSION="7 (Core)"
[2025-06-05 11:01:15] ID="centos"
[2025-06-05 11:01:15] ID_LIKE="rhel fedora"
[2025-06-05 11:01:15] VERSION_ID="7"
[2025-06-05 11:01:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:01:15] ANSI_COLOR="0;31"
[2025-06-05 11:01:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:01:15] HOME_URL="https://www.centos.org/"
[2025-06-05 11:01:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:01:15] 
[2025-06-05 11:01:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:01:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:01:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:01:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:01:15] 
[2025-06-05 11:01:15] 2025-06-05 08:38:17,908 | INFO     | **************************************
[2025-06-05 11:01:15] 2025-06-05 08:38:18,112 | INFO     | PID=26621 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 11:01:15] 2025-06-05 08:38:18,112 | INFO     | .. there are 9 such processes running
[2025-06-05 11:01:15] 2025-06-05 08:38:18,412 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 11:01:15] 2025-06-05 08:38:18,679 | INFO     | sufficient remaining disk space (497104715776 B)
[2025-06-05 11:01:15] 2025-06-05 08:38:18,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:01:15] 2025-06-05 08:38:18,680 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:01:15] 2025-06-05 08:38:18,680 | INFO     | update_server=False
[2025-06-05 11:01:15] 2025-06-05 08:38:18,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:01:15] 2025-06-05 08:38:18,684 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:01:15] 2025-06-05 08:38:18,685 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:01:15] 2025-06-05 08:38:18,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:01:15] 2025-06-05 08:38:18,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:01:15] 2025-06-05 08:38:18,697 | INFO     | all payload control threads have been joined
[2025-06-05 11:01:15] 2025-06-05 08:38:18,746 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 11:01:15] 2025-06-05 08:38:18,747 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 11:01:15] 2025-06-05 08:38:18,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:01:15] 2025-06-05 08:38:18,747 | INFO     | will abort loop
[2025-06-05 11:01:15] 2025-06-05 08:38:18,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:01:15] 2025-06-05 08:38:19,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:01:15] 2025-06-05 08:38:19,610 | INFO     | all data control threads have been joined
[2025-06-05 11:01:15] 2025-06-05 08:38:19,686 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:19,703 | INFO     | [payload] control thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:19,754 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:19,823 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:19,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,007 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,107 | INFO     | all job control threads have been joined
[2025-06-05 11:01:15] 2025-06-05 08:38:20,148 | INFO     | [job] validate thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:01:15] 2025-06-05 08:38:20,573 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,590 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,616 | INFO     | [data] control thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,816 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,843 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,911 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:20,986 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:21,113 | INFO     | [job] control thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:24,231 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:01:15] 2025-06-05 08:38:24,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531137378112)>', '<ExcThread(monitor, started 140530700764928)>']
[2025-06-05 11:01:15] 2025-06-05 08:38:24,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:01:15] 2025-06-05 08:38:24,720 | INFO     | [monitor] control thread has ended
[2025-06-05 11:01:15] 2025-06-05 08:38:29,384 | INFO     | all workflow threads have been joined
[2025-06-05 11:01:15] 2025-06-05 08:38:29,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:01:15] 2025-06-05 08:38:29,385 | INFO     | traces error code: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:29,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:01:15] 2025-06-05 08:38:29,789 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:01:15] 2025-06-05 08:38:29,870 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:01:15] 2025-06-05 08:38:29,958 [wrapper] pilotpid: 26621
[2025-06-05 11:01:15] 2025-06-05 08:38:30,072 [wrapper] Pilot exit status: 0
[2025-06-05 11:01:15] 2025-06-05 08:38:30,632 [wrapper] pandaids: 6667666682
[2025-06-05 11:01:15] 2025-06-05 08:38:31,565 [wrapper] cleanup supervisor_pilot 32176 26622
[2025-06-05 11:01:15] 2025-06-05 08:38:31,694 [wrapper] Test setup, not cleaning
[2025-06-05 11:01:15] 2025-06-05 08:38:31,747 [wrapper] apfmon messages muted
[2025-06-05 11:01:15] 2025-06-05 08:38:31,809 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:01:15] 2025-06-05 08:38:31,921 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:01:15]  *** Error codes and diagnostics ***
[2025-06-05 11:01:15]     "exeErrorCode": 0,
[2025-06-05 11:01:15]     "exeErrorDiag": "",
[2025-06-05 11:01:15]     "pilotErrorCode": 0,
[2025-06-05 11:01:15]     "pilotErrorDiag": "",
[2025-06-05 11:01:15]  *** Listing of results directory ***
[2025-06-05 11:01:15] total 415976
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc    495897 May 27 23:39 pilot3.tar.gz
[2025-06-05 11:01:15] -rwx------. 1 boinc boinc     37140 May 27 23:45 runpilot2-wrapper.sh
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc      5111 May 27 23:45 queuedata.json
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc       100 Jun  5 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:01:15] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 05:24 run_atlas
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc       105 Jun  5 05:24 job.xml
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc      6390 Jun  5 05:24 init_data.xml
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc 221706100 Jun  5 05:24 EVNT.44871834._002892.pool.root.1
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:24 start_atlas.sh
[2025-06-05 11:01:15] drwxrwx--x. 2 boinc boinc        68 Jun  5 05:24 shared
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc    508875 Jun  5 05:24 input.tar.gz
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc         0 Jun  5 05:24 boinc_lockfile
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc      2559 Jun  5 05:24 pandaJob.out
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc    987109 Jun  5 05:24 agis_schedconf.cvmfs.json
[2025-06-05 11:01:15] drwx------. 4 boinc boinc      4096 Jun  5 05:24 pilot3
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc 196361239 Jun  5 10:35 HITS.44871837._073788.pool.root.1
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc       531 Jun  5 10:35 boinc_task_state.xml
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc      1013 Jun  5 10:36 memory_monitor_summary.json
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc   1598969 Jun  5 10:36 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc    433833 Jun  5 10:36 log.44871837._073788.job.log.tgz.1
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc        95 Jun  5 10:37 pilot_heartbeat.json
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc      7688 Jun  5 10:38 heartbeat.json
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc      5117 Jun  5 10:38 pilotlog.txt
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc   1602874 Jun  5 10:38 log.44871837._073788.job.log.1
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc       357 Jun  5 10:38 output.list
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc       620 Jun  5 10:38 runtime_log
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc   2058240 Jun  5 10:38 result.tar.gz
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc      8659 Jun  5 10:38 runtime_log.err
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc       657 Jun  5 10:38 hBGLDmrHHe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfSaKDmx7Z8bm.diag
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc      8192 Jun  5 11:01 boinc_mmap_file
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc        28 Jun  5 11:01 wrapper_checkpoint.txt
[2025-06-05 11:01:15] -rw-r--r--. 1 boinc boinc     20598 Jun  5 11:01 stderr.txt
[2025-06-05 11:01:15] HITS file was successfully produced:
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc 196361239 Jun  5 10:35 shared/HITS.pool.root.1
[2025-06-05 11:01:15]  *** Contents of shared directory: ***
[2025-06-05 11:01:15] total 410800
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc 221706100 Jun  5 05:24 ATLAS.root_0
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:24 start_atlas.sh
[2025-06-05 11:01:15] -rw-r--r--. 2 boinc boinc    508875 Jun  5 05:24 input.tar.gz
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc 196361239 Jun  5 10:35 HITS.pool.root.1
[2025-06-05 11:01:15] -rw-------. 1 boinc boinc   2058240 Jun  5 10:38 result.tar.gz
11:01:17 (17832): run_atlas exited; CPU time 71545.932190
11:01:17 (17832): called boinc_finish(0)

</stderr_txt>
]]>

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