Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:29:36 (20584): wrapper (7.7.26015): starting
16:29:36 (20584): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 16:29:36] Arguments: --nthreads 8
[2025-06-05 16:29:36] Threads: 8
[2025-06-05 16:29:36] Checking for CVMFS
[2025-06-05 16:29:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 16:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 16:29:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 16:29:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 16:29:39] 2.11.2.0 19945 34951 96884 146822 0 16 19547811 25165824 3519 130560 0 18231654 99.760 21093360 2177 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 16:29:39] CVMFS is ok
[2025-06-05 16:29:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:29:39] Checking for apptainer binary...
[2025-06-05 16:29:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 16:29:39] Running /usr/bin/apptainer --version
[2025-06-05 16:29:39] apptainer version 1.3.2-1.el7
[2025-06-05 16:29:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 17:33:57] cg-vwn324.simple-grid.lan
[2025-06-05 17:33:57] apptainer works
[2025-06-05 17:33:57] Set ATHENA_PROC_NUMBER=8
[2025-06-05 17:33:57] Set ATHENA_CORE_NUMBER=8
[2025-06-05 17:33:57] Starting ATLAS job with PandaID=6667433501
[2025-06-05 17:33:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 03:26:42]  *** The last 200 lines of the pilot log: ***
[2025-06-06 03:26:42] 2025-06-05 21:20:01,146 | INFO     | extracted standard info from prmon json
[2025-06-06 03:26:42] 2025-06-05 21:20:01,146 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 03:26:42] 2025-06-05 21:20:01,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 03:26:42] 2025-06-05 21:20:01,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 03:26:42] 2025-06-05 21:20:01,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 03:26:42] 2025-06-05 21:20:01,153 | INFO     | fitting pss+swap vs Time
[2025-06-06 03:26:42] 2025-06-05 21:20:01,154 | INFO     | sum of square deviations: 10941980042.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,158 | INFO     | sum of deviations: 105730041234.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,158 | INFO     | mean x: 1749148304.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,158 | INFO     | mean y: 2472737.612804878
[2025-06-06 03:26:42] 2025-06-05 21:20:01,159 | INFO     | -- intersect: -16899177754.361357
[2025-06-06 03:26:42] 2025-06-05 21:20:01,159 | INFO     | intersect: -16899177754.361357
[2025-06-06 03:26:42] 2025-06-05 21:20:01,159 | INFO     | chi2: 6.840695979738025
[2025-06-06 03:26:42] 2025-06-05 21:20:01,160 | INFO     | sum of square deviations: 10449170802.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,163 | INFO     | sum of deviations: 126191630432.99998
[2025-06-06 03:26:42] 2025-06-05 21:20:01,163 | INFO     | mean x: 1749148152.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,163 | INFO     | mean y: 2478986.1145510837
[2025-06-06 03:26:42] 2025-06-05 21:20:01,164 | INFO     | -- intersect: -21121480163.59147
[2025-06-06 03:26:42] 2025-06-05 21:20:01,164 | INFO     | intersect: -21121480163.59147
[2025-06-06 03:26:42] 2025-06-05 21:20:01,164 | INFO     | chi2: 6.114530267091574
[2025-06-06 03:26:42] 2025-06-05 21:20:01,164 | INFO     | current chi2=6.114530267091574 (change=10.615377657439188 %)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,164 | INFO     | right removable region: 322
[2025-06-06 03:26:42] 2025-06-05 21:20:01,165 | INFO     | sum of square deviations: 10449170802.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,168 | INFO     | sum of deviations: -7815668737.000002
[2025-06-06 03:26:42] 2025-06-05 21:20:01,168 | INFO     | mean x: 1749148457.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,168 | INFO     | mean y: 2507848.4458204336
[2025-06-06 03:26:42] 2025-06-05 21:20:01,169 | INFO     | -- intersect: 1310818830.3210588
[2025-06-06 03:26:42] 2025-06-05 21:20:01,169 | INFO     | intersect: 1310818830.3210588
[2025-06-06 03:26:42] 2025-06-05 21:20:01,169 | INFO     | chi2: 2.242798375905728
[2025-06-06 03:26:42] 2025-06-05 21:20:01,169 | INFO     | current chi2=2.242798375905728 (change=67.21388609362495 %)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,170 | INFO     | sum of square deviations: 9971385099.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,173 | INFO     | sum of deviations: -61245231712.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,173 | INFO     | mean x: 1749148609.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,173 | INFO     | mean y: 2524828.037735849
[2025-06-06 03:26:42] 2025-06-05 21:20:01,174 | INFO     | -- intersect: 10745968273.314142
[2025-06-06 03:26:42] 2025-06-05 21:20:01,174 | INFO     | intersect: 10745968273.314142
[2025-06-06 03:26:42] 2025-06-05 21:20:01,174 | INFO     | chi2: 1.0113413701765108
[2025-06-06 03:26:42] 2025-06-05 21:20:01,174 | INFO     | current chi2=1.0113413701765108 (change=54.90716503804796 %)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,175 | INFO     | sum of square deviations: 9508390372.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,178 | INFO     | sum of deviations: -66359709551.000015
[2025-06-06 03:26:42] 2025-06-05 21:20:01,178 | INFO     | mean x: 1749148762.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,178 | INFO     | mean y: 2526512.3290734827
[2025-06-06 03:26:42] 2025-06-05 21:20:01,178 | INFO     | -- intersect: 12209955873.83481
[2025-06-06 03:26:42] 2025-06-05 21:20:01,179 | INFO     | intersect: 12209955873.83481
[2025-06-06 03:26:42] 2025-06-05 21:20:01,179 | INFO     | chi2: 0.9919939135050186
[2025-06-06 03:26:42] 2025-06-05 21:20:01,179 | INFO     | current chi2=0.9919939135050186 (change=1.9130490694863438 %)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,179 | INFO     | left removable region: 30
[2025-06-06 03:26:42] 2025-06-05 21:20:01,180 | INFO     | sum of square deviations: 7720081493.0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,182 | INFO     | sum of deviations: -28636633274.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,183 | INFO     | mean x: 1749149036.5
[2025-06-06 03:26:42] 2025-06-05 21:20:01,183 | INFO     | mean y: 2528165.5034246575
[2025-06-06 03:26:42] 2025-06-05 21:20:01,183 | INFO     | -- intersect: 6490767900.551972
[2025-06-06 03:26:42] 2025-06-05 21:20:01,183 | INFO     | intersect: 6490767900.551972
[2025-06-06 03:26:42] 2025-06-05 21:20:01,184 | INFO     | chi2: 0.15577755527577244
[2025-06-06 03:26:42] 2025-06-05 21:20:01,184 | INFO     | -- intersect: 6490767900.551972
[2025-06-06 03:26:42] 2025-06-05 21:20:01,184 | INFO     | current memory leak: -3.71 B/s (using 292 data points, chi2=0.16)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,185 | INFO     | ..............................
[2025-06-06 03:26:42] 2025-06-05 21:20:01,185 | INFO     | . Timing measurements:
[2025-06-06 03:26:42] 2025-06-05 21:20:01,185 | INFO     | . get job = 0 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,185 | INFO     | . initial setup = 10 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | . payload setup = 141 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | . stage-in = 0 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | . payload execution = 20117 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | . stage-out = 4 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | . log creation = 1 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,186 | INFO     | ..............................
[2025-06-06 03:26:42] 2025-06-05 21:20:01,509 | INFO     | 
[2025-06-06 03:26:42] 2025-06-05 21:20:01,509 | INFO     | job summary report
[2025-06-06 03:26:42] 2025-06-05 21:20:01,509 | INFO     | --------------------------------------------------
[2025-06-06 03:26:42] 2025-06-05 21:20:01,509 | INFO     | PanDA job id: 6667433501
[2025-06-06 03:26:42] 2025-06-05 21:20:01,509 | INFO     | task id: 44871837
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | errors: (none)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | pilot state: finished 
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | transexitcode: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | exeerrorcode: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | exeerrordiag: 
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | exitcode: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | exitmsg: OK
[2025-06-06 03:26:42] 2025-06-05 21:20:01,510 | INFO     | cpuconsumptiontime: 72889 s
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | nevents: 400
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | neventsw: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | pid: 2037
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | pgrp: 2037
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | corecount: 8
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | event service: False
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | sizes: {0: 2396564, 1: 2397249, 2: 2397448, 13: 2397448, 23: 2397504, 34: 2397532, 45: 2397688, 56: 2397716, 66: 2397744, 77: 2397772, 88: 2397828, 92: 2398342, 99
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | --------------------------------------------------
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | 
[2025-06-06 03:26:42] 2025-06-05 21:20:01,511 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-06 03:26:42] 2025-06-05 21:20:01,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,773 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 03:26:42] 2025-06-05 21:20:01,775 | INFO     | job 6667433501 has completed (purged errors)
[2025-06-06 03:26:42] 2025-06-05 21:20:01,775 | INFO     | overall cleanup function is called
[2025-06-06 03:26:42] 2025-06-05 21:20:02,784 | INFO     | --- collectZombieJob: --- 10, [2037]
[2025-06-06 03:26:42] 2025-06-05 21:20:02,785 | INFO     | zombie collector waiting for pid 2037
[2025-06-06 03:26:42] 2025-06-05 21:20:02,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 03:26:42] 2025-06-05 21:20:02,785 | INFO     | collected zombie processes
[2025-06-06 03:26:42] 2025-06-05 21:20:02,785 | INFO     | will attempt to kill all subprocesses of pid=2037
[2025-06-06 03:26:42] 2025-06-05 21:20:02,926 | INFO     | process IDs to be killed: [2037] (in reverse order)
[2025-06-06 03:26:42] 2025-06-05 21:20:03,584 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 03:26:42] 2025-06-05 21:20:03,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 03:26:42] 2025-06-05 21:20:03,589 | INFO     | did not find any defunct processes belonging to 2037
[2025-06-06 03:26:42] 2025-06-05 21:20:03,597 | INFO     | did not find any defunct processes belonging to 2037
[2025-06-06 03:26:42] 2025-06-05 21:20:03,598 | INFO     | ready for new job
[2025-06-06 03:26:42] 2025-06-05 21:20:03,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 03:26:42] 2025-06-05 21:20:03,600 | INFO     | **************************************
[2025-06-06 03:26:42] 2025-06-05 21:20:03,601 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 03:26:42] 2025-06-05 21:20:03,601 | INFO     | **************************************
[2025-06-06 03:26:42] 2025-06-05 21:20:03,601 | INFO     | 
[2025-06-06 03:26:42] 2025-06-05 21:20:03,602 | INFO     | pilot is running in a VM
[2025-06-06 03:26:42] 2025-06-05 21:20:03,602 | INFO     | architecture information:
[2025-06-06 03:26:42] 2025-06-05 21:20:03,611 | INFO     | executing command: cat /etc/os-release
[2025-06-06 03:26:42] 2025-06-05 21:20:03,861 | INFO     | cat /etc/os-release:
[2025-06-06 03:26:42] NAME="CentOS Linux"
[2025-06-06 03:26:42] VERSION="7 (Core)"
[2025-06-06 03:26:42] ID="centos"
[2025-06-06 03:26:42] ID_LIKE="rhel fedora"
[2025-06-06 03:26:42] VERSION_ID="7"
[2025-06-06 03:26:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 03:26:42] ANSI_COLOR="0;31"
[2025-06-06 03:26:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 03:26:42] HOME_URL="https://www.centos.org/"
[2025-06-06 03:26:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 03:26:42] 
[2025-06-06 03:26:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 03:26:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 03:26:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 03:26:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 03:26:42] 
[2025-06-06 03:26:42] 2025-06-05 21:20:03,862 | INFO     | **************************************
[2025-06-06 03:26:42] 2025-06-05 21:20:04,366 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-06 03:26:42] 2025-06-05 21:20:04,578 | INFO     | sufficient remaining disk space (496881369088 B)
[2025-06-06 03:26:42] 2025-06-05 21:20:04,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 03:26:42] 2025-06-05 21:20:04,579 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 03:26:42] 2025-06-05 21:20:04,579 | INFO     | update_server=False
[2025-06-06 03:26:42] 2025-06-05 21:20:04,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 03:26:42] 2025-06-05 21:20:04,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 03:26:42] 2025-06-05 21:20:04,584 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 03:26:42] 2025-06-05 21:20:04,584 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 03:26:42] 2025-06-05 21:20:04,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 03:26:42] 2025-06-05 21:20:04,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 03:26:42] 2025-06-05 21:20:04,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 03:26:42] 2025-06-05 21:20:04,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:26:42] 2025-06-05 21:20:04,597 | INFO     | aborting loop
[2025-06-06 03:26:42] 2025-06-05 21:20:04,961 | INFO     | all payload control threads have been joined
[2025-06-06 03:26:42] 2025-06-05 21:20:05,099 | INFO     | all data control threads have been joined
[2025-06-06 03:26:42] 2025-06-05 21:20:05,585 | INFO     | [job] retrieve thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:05,603 | INFO     | [job] job monitor thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:05,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:05,733 | INFO     | [job] validate thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:05,745 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:05,967 | INFO     | [payload] control thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,052 | INFO     | all job control threads have been joined
[2025-06-06 03:26:42] 2025-06-05 21:20:06,071 | INFO     | [payload] validate_post thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,105 | INFO     | [data] control thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 03:26:42] 2025-06-05 21:20:06,458 | INFO     | [data] copytool_in thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,565 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,569 | INFO     | [payload] failed_post thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,603 | INFO     | [data] copytool_out thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:06,795 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:07,058 | INFO     | [job] control thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:07,342 | INFO     | [job] queue monitor thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:08,591 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 03:26:42] 2025-06-05 21:20:08,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508626376512)>', '<ExcThread(monitor, started 140507959252736)>']
[2025-06-06 03:26:42] 2025-06-05 21:20:09,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 03:26:42] 2025-06-05 21:20:09,623 | INFO     | [monitor] control thread has ended
[2025-06-06 03:26:42] 2025-06-05 21:20:13,944 | INFO     | all workflow threads have been joined
[2025-06-06 03:26:42] 2025-06-05 21:20:13,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 03:26:42] 2025-06-05 21:20:13,945 | INFO     | traces error code: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:13,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 03:26:42] 2025-06-05 21:20:14,371 [wrapper] ==== pilot stdout END ====
[2025-06-06 03:26:42] 2025-06-05 21:20:14,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 03:26:42] 2025-06-05 21:20:14,511 [wrapper] pilotpid: 25844
[2025-06-06 03:26:42] 2025-06-05 21:20:14,553 [wrapper] Pilot exit status: 0
[2025-06-06 03:26:42] 2025-06-05 21:20:14,984 [wrapper] pandaids: 6667433501
[2025-06-06 03:26:42] 2025-06-05 21:20:15,747 [wrapper] cleanup supervisor_pilot 15304 25845
[2025-06-06 03:26:42] 2025-06-05 21:20:15,850 [wrapper] Test setup, not cleaning
[2025-06-06 03:26:42] 2025-06-05 21:20:15,908 [wrapper] apfmon messages muted
[2025-06-06 03:26:42] 2025-06-05 21:20:15,968 [wrapper] ==== wrapper stdout END ====
[2025-06-06 03:26:42] 2025-06-05 21:20:16,037 [wrapper] ==== wrapper stderr END ====
[2025-06-06 03:26:42]  *** Error codes and diagnostics ***
[2025-06-06 03:26:42]     "exeErrorCode": 0,
[2025-06-06 03:26:42]     "exeErrorDiag": "",
[2025-06-06 03:26:42]     "pilotErrorCode": 0,
[2025-06-06 03:26:42]     "pilotErrorDiag": "",
[2025-06-06 03:26:42]  *** Listing of results directory ***
[2025-06-06 03:26:42] total 419272
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc    495897 May 27 20:37 pilot3.tar.gz
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc      5111 May 27 20:40 queuedata.json
[2025-06-06 03:26:42] -rwx------. 1 boinc boinc     37140 May 27 20:42 runpilot2-wrapper.sh
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc       100 Jun  5 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 03:26:42] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 16:29 run_atlas
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc       105 Jun  5 16:29 job.xml
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc 222131669 Jun  5 16:29 EVNT.44871834._002815.pool.root.1
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc      6390 Jun  5 16:29 init_data.xml
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc     15093 Jun  5 16:29 start_atlas.sh
[2025-06-06 03:26:42] drwxrwx--x. 2 boinc boinc        68 Jun  5 16:29 shared
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc    508883 Jun  5 16:29 input.tar.gz
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc         0 Jun  5 16:29 boinc_lockfile
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc      2559 Jun  5 17:33 pandaJob.out
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc    983229 Jun  5 17:37 agis_schedconf.cvmfs.json
[2025-06-06 03:26:42] drwx------. 4 boinc boinc      4096 Jun  5 17:37 pilot3
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc 199016682 Jun  5 23:17 HITS.44871837._071725.pool.root.1
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc       531 Jun  5 23:17 boinc_task_state.xml
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc      1030 Jun  5 23:18 memory_monitor_summary.json
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc   1598969 Jun  5 23:18 agis_ddmendpoints.agis.ALL.json
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc    445397 Jun  5 23:18 log.44871837._071725.job.log.tgz.1
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc        95 Jun  5 23:19 pilot_heartbeat.json
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc      7694 Jun  5 23:20 heartbeat.json
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc      4539 Jun  5 23:20 pilotlog.txt
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc   1739258 Jun  5 23:20 log.44871837._071725.job.log.1
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc       357 Jun  5 23:20 output.list
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc       620 Jun  5 23:20 runtime_log
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc   2201600 Jun  5 23:20 result.tar.gz
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc       657 Jun  5 23:20 SedKDmkQEe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJFSKDmI7lULo.diag
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc      8659 Jun  5 23:20 runtime_log.err
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc      8192 Jun  6 03:26 boinc_mmap_file
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc        28 Jun  6 03:26 wrapper_checkpoint.txt
[2025-06-06 03:26:42] -rw-r--r--. 1 boinc boinc     20506 Jun  6 03:26 stderr.txt
[2025-06-06 03:26:42] HITS file was successfully produced:
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc 199016682 Jun  5 23:17 shared/HITS.pool.root.1
[2025-06-06 03:26:42]  *** Contents of shared directory: ***
[2025-06-06 03:26:42] total 413952
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc 222131669 Jun  5 16:29 ATLAS.root_0
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc     15093 Jun  5 16:29 start_atlas.sh
[2025-06-06 03:26:42] -rw-r--r--. 2 boinc boinc    508883 Jun  5 16:29 input.tar.gz
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc 199016682 Jun  5 23:17 HITS.pool.root.1
[2025-06-06 03:26:42] -rw-------. 1 boinc boinc   2201600 Jun  5 23:20 result.tar.gz
03:26:44 (20584): run_atlas exited; CPU time 73158.235749
03:26:44 (20584): called boinc_finish(0)

</stderr_txt>
]]>

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