Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:54:57 (1553449): wrapper (7.7.26015): starting
22:54:57 (1553449): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 22:54:57] Arguments: --nthreads 12
[2025-06-04 22:54:57] Threads: 12
[2025-06-04 22:54:57] Checking for CVMFS
[2025-06-04 22:54:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:54:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:54:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:54:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:54:58] 2.12.6.0 2658689 24138 502924 146802 1 291 25189603 32935936 11229 16776704 1 96007824 99.595 116989435 34488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 22:54:58] CVMFS is ok
[2025-06-04 22:54:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 22:54:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 22:54:58] Further information can be found at the LHC@home message board.
[2025-06-04 22:54:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:54:58] Checking for apptainer binary...
[2025-06-04 22:54:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:54:58] Running /usr/bin/apptainer --version
[2025-06-04 22:54:58] apptainer version 1.4.1-1.el9
[2025-06-04 22:54:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:54:59] c6-5-7-2.aglt2.org
[2025-06-04 22:54:59] apptainer works
[2025-06-04 22:54:59] Set ATHENA_PROC_NUMBER=12
[2025-06-04 22:54:59] Set ATHENA_CORE_NUMBER=12
[2025-06-04 22:54:59] Starting ATLAS job with PandaID=6680329738
[2025-06-04 22:54:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:00:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:00:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 00:00:48]  replicas=None
[2025-06-05 00:00:48]  scope=mc23_13p6TeV
[2025-06-05 00:00:48]  status=None
[2025-06-05 00:00:48]  status_code=0
[2025-06-05 00:00:48]  storage_token=
[2025-06-05 00:00:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6680329738/log.45006595._057028.job.log.tgz.1
[2025-06-05 00:00:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/ea/log.45006595._057028.job.log.tgz.1
[2025-06-05 00:00:48]  workdir=None
[2025-06-05 00:00:48] ]
[2025-06-05 00:00:48] 2025-06-05 04:00:19,560 | INFO     | transferring file log.45006595._057028.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6680329738/log.45006595._057028.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-05 00:00:48] 2025-06-05 04:00:19,560 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6680329738/log.45006595._057028.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._057028.job
[2025-06-05 00:00:48] 2025-06-05 04:00:19,579 | INFO     | adding to output.list: log.45006595._057028.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/ea/log.45006595._057028.job.log.tg
[2025-06-05 00:00:48] 2025-06-05 04:00:19,580 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 00:00:48] 2025-06-05 04:00:19,580 | INFO     | summary of transferred files:
[2025-06-05 00:00:48] 2025-06-05 04:00:19,580 | INFO     |  -- lfn=log.45006595._057028.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 00:00:48] 2025-06-05 04:00:19,580 | INFO     | stage-out finished correctly
[2025-06-05 00:00:48] 2025-06-05 04:00:21,300 | INFO     | monitor loop #286: job 0:6680329738 is in state 'finished'
[2025-06-05 00:00:48] 2025-06-05 04:00:21,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:00:48] 2025-06-05 04:00:22,903 | INFO     | PID=1557133 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 00:00:48] 2025-06-05 04:00:22,903 | INFO     | .. there are 8 such processes running
[2025-06-05 00:00:48] 2025-06-05 04:00:22,983 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 00:00:48] 2025-06-05 04:00:23,802 | INFO     | monitor loop #287: job 0:6680329738 is in state 'finished'
[2025-06-05 00:00:48] 2025-06-05 04:00:23,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:00:48] 2025-06-05 04:00:25,178 | INFO     | job 6680329738 has state=finished
[2025-06-05 00:00:48] 2025-06-05 04:00:25,179 | INFO     | preparing for final server update for job 6680329738 in state='finished'
[2025-06-05 00:00:48] 2025-06-05 04:00:25,180 | INFO     | this job has now completed (state=finished)
[2025-06-05 00:00:48] 2025-06-05 04:00:25,180 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 00:00:48] 2025-06-05 04:00:25,180 | INFO     | log transfer has been attempted: DONE
[2025-06-05 00:00:48] 2025-06-05 04:00:25,180 | INFO     | job 6680329738 has finished - writing final server update
[2025-06-05 00:00:48] 2025-06-05 04:00:25,180 | INFO     | total number of processed events: 400 (read)
[2025-06-05 00:00:48] 2025-06-05 04:00:25,196 | INFO     | executing command: lscpu
[2025-06-05 00:00:48] 2025-06-05 04:00:25,259 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 00:00:48] 2025-06-05 04:00:26,306 | INFO     | monitor loop #288: job 0:6680329738 is in state 'finished'
[2025-06-05 00:00:48] 2025-06-05 04:00:26,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:00:48] 2025-06-05 04:00:28,810 | INFO     | monitor loop #289: job 0:6680329738 is in state 'finished'
[2025-06-05 00:00:48] 2025-06-05 04:00:28,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 00:00:48] 2025-06-05 04:00:28,901 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 00:00:48] 2025-06-05 04:00:28,902 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680329738/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:00:48] 2025-06-05 04:00:28,902 | INFO     | extracted standard info from prmon json
[2025-06-05 00:00:48] 2025-06-05 04:00:28,903 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:00:48] 2025-06-05 04:00:28,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:00:48] 2025-06-05 04:00:28,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:00:48] 2025-06-05 04:00:28,903 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:00:48] 2025-06-05 04:00:28,905 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:00:48] 2025-06-05 04:00:28,905 | INFO     | sum of square deviations: 54418048.55357141
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | sum of deviations: -4082528375.196429
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | mean x: 1749094173.6607144
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | mean y: 2446946.410714286
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | -- intersect: 131222268028.95074
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | intersect: 131222268028.95074
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | chi2: 0.11145616614348687
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | -- intersect: 131222268028.95074
[2025-06-05 00:00:48] 2025-06-05 04:00:28,906 | INFO     | current memory leak: -75.02 B/s (using 56 data points, chi2=0.11)
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | ..............................
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | . Timing measurements:
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | . get job = 0 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | . initial setup = 3 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | . payload setup = 22 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,907 | INFO     | . stage-in = 0 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,908 | INFO     | . payload execution = 3838 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,908 | INFO     | . stage-out = 0 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,908 | INFO     | . log creation = 0 s
[2025-06-05 00:00:48] 2025-06-05 04:00:28,908 | INFO     | ..............................
[2025-06-05 00:00:48] 2025-06-05 04:00:29,064 | INFO     | 
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | job summary report
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | --------------------------------------------------
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | PanDA job id: 6680329738
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | task id: 45006595
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | errors: (none)
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | pilot state: finished 
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | transexitcode: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:29,065 | INFO     | exeerrorcode: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | exeerrordiag: 
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | exitcode: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | exitmsg: OK
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | cpuconsumptiontime: 32107 s
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | nevents: 400
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | neventsw: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | pid: 1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | pgrp: 1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | corecount: 12
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | event service: False
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | sizes: {0: 2396463, 1: 2397319, 2: 2397319, 10: 2397553, 13: 2397581, 3865: 2423360, 3866: 2432301, 3869: 2432357, 3875: 2432527}
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | --------------------------------------------------
[2025-06-05 00:00:48] 2025-06-05 04:00:29,066 | INFO     | 
[2025-06-05 00:00:48] 2025-06-05 04:00:29,067 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 00:00:48] 2025-06-05 04:00:29,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,087 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | job 6680329738 has completed (purged errors)
[2025-06-05 00:00:48] 2025-06-05 04:00:29,089 | INFO     | overall cleanup function is called
[2025-06-05 00:00:48] 2025-06-05 04:00:30,097 | INFO     | --- collectZombieJob: --- 10, [1564110]
[2025-06-05 00:00:48] 2025-06-05 04:00:30,098 | INFO     | zombie collector waiting for pid 1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:30,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:00:48] 2025-06-05 04:00:30,098 | INFO     | collected zombie processes
[2025-06-05 00:00:48] 2025-06-05 04:00:30,098 | INFO     | will attempt to kill all subprocesses of pid=1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:30,305 | INFO     | process IDs to be killed: [1564110] (in reverse order)
[2025-06-05 00:00:48] 2025-06-05 04:00:30,385 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:00:48] 2025-06-05 04:00:30,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:00:48] 2025-06-05 04:00:30,395 | INFO     | did not find any defunct processes belonging to 1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:30,404 | INFO     | did not find any defunct processes belonging to 1564110
[2025-06-05 00:00:48] 2025-06-05 04:00:30,404 | INFO     | ready for new job
[2025-06-05 00:00:48] 2025-06-05 04:00:30,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:00:48] 2025-06-05 04:00:30,406 | INFO     | **************************************
[2025-06-05 00:00:48] 2025-06-05 04:00:30,407 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:00:48] 2025-06-05 04:00:30,407 | INFO     | **************************************
[2025-06-05 00:00:48] 2025-06-05 04:00:30,407 | INFO     | 
[2025-06-05 00:00:48] 2025-06-05 04:00:30,422 | INFO     | architecture information:
[2025-06-05 00:00:48] 2025-06-05 04:00:30,422 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:00:48] 2025-06-05 04:00:30,438 | INFO     | cat /etc/os-release:
[2025-06-05 00:00:48] NAME="CentOS Linux"
[2025-06-05 00:00:48] VERSION="7 (Core)"
[2025-06-05 00:00:48] ID="centos"
[2025-06-05 00:00:48] ID_LIKE="rhel fedora"
[2025-06-05 00:00:48] VERSION_ID="7"
[2025-06-05 00:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:00:48] ANSI_COLOR="0;31"
[2025-06-05 00:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:00:48] HOME_URL="https://www.centos.org/"
[2025-06-05 00:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:00:48] 
[2025-06-05 00:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:00:48] 
[2025-06-05 00:00:48] 2025-06-05 04:00:30,438 | INFO     | **************************************
[2025-06-05 00:00:48] 2025-06-05 04:00:30,941 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 00:00:48] 2025-06-05 04:00:30,957 | INFO     | sufficient remaining disk space (76584845312 B)
[2025-06-05 00:00:48] 2025-06-05 04:00:30,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:00:48] 2025-06-05 04:00:30,958 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:00:48] 2025-06-05 04:00:30,958 | INFO     | update_server=False
[2025-06-05 00:00:48] 2025-06-05 04:00:30,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:00:48] 2025-06-05 04:00:30,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:00:48] 2025-06-05 04:00:30,959 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 00:00:48] 2025-06-05 04:00:30,960 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:00:48] 2025-06-05 04:00:30,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:00:48] 2025-06-05 04:00:30,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:00:48] 2025-06-05 04:00:30,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:00:48] 2025-06-05 04:00:31,087 | INFO     | all data control threads have been joined
[2025-06-05 00:00:48] 2025-06-05 04:00:31,312 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 00:00:48] 2025-06-05 04:00:31,313 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 00:00:48] 2025-06-05 04:00:31,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:00:48] 2025-06-05 04:00:31,313 | INFO     | will abort loop
[2025-06-05 00:00:48] 2025-06-05 04:00:31,343 | INFO     | all payload control threads have been joined
[2025-06-05 00:00:48] 2025-06-05 04:00:31,961 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:31,964 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,067 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,093 | INFO     | [data] control thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,318 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,349 | INFO     | [payload] control thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,455 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,514 | INFO     | [job] validate thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,515 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,525 | INFO     | all job control threads have been joined
[2025-06-05 00:00:48] 2025-06-05 04:00:32,611 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,963 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:32,966 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:33,219 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:33,531 | INFO     | [job] control thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:33,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:00:48] 2025-06-05 04:00:37,589 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:41,714 | INFO     | job.realtimelogging is not enabled
[2025-06-05 00:00:48] 2025-06-05 04:00:42,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:00:48] 2025-06-05 04:00:42,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124976666432)>', '<ExcThread(monitor, started 140124625028864)>']
[2025-06-05 00:00:48] 2025-06-05 04:00:43,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:00:48] 2025-06-05 04:00:43,013 | INFO     | [monitor] control thread has ended
[2025-06-05 00:00:48] 2025-06-05 04:00:47,840 | INFO     | all workflow threads have been joined
[2025-06-05 00:00:48] 2025-06-05 04:00:47,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:00:48] 2025-06-05 04:00:47,841 | INFO     | traces error code: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:47,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:00:48] 2025-06-05 04:00:48,027 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:00:48] 2025-06-05 04:00:48,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:00:48] 2025-06-05 04:00:48,034 [wrapper] pilotpid: 1557133
[2025-06-05 00:00:48] 2025-06-05 04:00:48,036 [wrapper] Pilot exit status: 0
[2025-06-05 00:00:48] 2025-06-05 04:00:48,048 [wrapper] pandaids: 6680329738
[2025-06-05 00:00:48] 2025-06-05 04:00:48,106 [wrapper] cleanup supervisor_pilot 1736076 1557134
[2025-06-05 00:00:48] 2025-06-05 04:00:48,109 [wrapper] Test setup, not cleaning
[2025-06-05 00:00:48] 2025-06-05 04:00:48,112 [wrapper] apfmon messages muted
[2025-06-05 00:00:48] 2025-06-05 04:00:48,114 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:00:48] 2025-06-05 04:00:48,117 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:00:48]  *** Error codes and diagnostics ***
[2025-06-05 00:00:48]     "exeErrorCode": 0,
[2025-06-05 00:00:48]     "exeErrorDiag": "",
[2025-06-05 00:00:48]     "pilotErrorCode": 0,
[2025-06-05 00:00:48]     "pilotErrorDiag": "",
[2025-06-05 00:00:48]  *** Listing of results directory ***
[2025-06-05 00:00:48] total 387852
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 22:18 pilot3.tar.gz
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 22:51 queuedata.json
[2025-06-05 00:00:48] -rwx------. 1 boincer umatlas     37140 Jun  4 22:54 runpilot2-wrapper.sh
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas       100 Jun  4 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:00:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 22:54 run_atlas
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas       105 Jun  4 22:54 job.xml
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas 216585673 Jun  4 22:54 EVNT.45006593._001695.pool.root.1
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 22:54 start_atlas.sh
[2025-06-05 00:00:48] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 22:54 shared
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas    508888 Jun  4 22:54 input.tar.gz
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas         0 Jun  4 22:54 boinc_lockfile
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 22:54 pandaJob.out
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas    987109 Jun  4 22:55 agis_schedconf.cvmfs.json
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas   1598969 Jun  4 22:55 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:00:48] drwx------. 4 boincer umatlas      4096 Jun  4 22:55 pilot3
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 23:54 init_data.xml
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas        95 Jun  4 23:59 pilot_heartbeat.json
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas 175261205 Jun  4 23:59 HITS.45006595._057028.pool.root.1
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas       530 Jun  4 23:59 boinc_task_state.xml
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas      1042 Jun  5 00:00 memory_monitor_summary.json
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas    350138 Jun  5 00:00 log.45006595._057028.job.log.tgz.1
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas      7725 Jun  5 00:00 heartbeat.json
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas        27 Jun  5 00:00 wrapper_checkpoint.txt
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas      4734 Jun  5 00:00 pilotlog.txt
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas    389535 Jun  5 00:00 log.45006595._057028.job.log.1
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas      8192 Jun  5 00:00 boinc_mmap_file
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas       357 Jun  5 00:00 output.list
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas       620 Jun  5 00:00 runtime_log
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas    757760 Jun  5 00:00 result.tar.gz
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas      8661 Jun  5 00:00 runtime_log.err
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas       654 Jun  5 00:00 mQJLDmavFh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS4nKDmmhlPkm.diag
[2025-06-05 00:00:48] -rw-r--r--. 1 boincer umatlas     21934 Jun  5 00:00 stderr.txt
[2025-06-05 00:00:48] HITS file was successfully produced:
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas 175261205 Jun  4 23:59 shared/HITS.pool.root.1
[2025-06-05 00:00:48]  *** Contents of shared directory: ***
[2025-06-05 00:00:48] total 383932
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas 216585673 Jun  4 22:54 ATLAS.root_0
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 22:54 start_atlas.sh
[2025-06-05 00:00:48] -rw-r--r--. 2 boincer umatlas    508888 Jun  4 22:54 input.tar.gz
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas 175261205 Jun  4 23:59 HITS.pool.root.1
[2025-06-05 00:00:48] -rw-------. 1 boincer umatlas    757760 Jun  5 00:00 result.tar.gz
00:00:49 (1553449): run_atlas exited; CPU time 32150.403946
00:00:49 (1553449): called boinc_finish(0)

</stderr_txt>
]]>

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