Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:30:00 (25060): wrapper (7.7.26015): starting
15:30:00 (25060): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 15:30:00] Arguments: --nthreads 8
[2025-06-05 15:30:00] Threads: 8
[2025-06-05 15:30:00] Checking for CVMFS
[2025-06-05 15:30:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 15:30:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 15:30:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 15:30:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 15:30:02] 2.11.2.0 14465 34706 94492 146820 0 16 18059415 25165825 4686 130560 0 18992562 99.811 20818384 2054 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 15:30:02] CVMFS is ok
[2025-06-05 15:30:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 15:30:02] Checking for apptainer binary...
[2025-06-05 15:30:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 15:30:02] Running /usr/bin/apptainer --version
[2025-06-05 15:30:02] apptainer version 1.3.2-1.el7
[2025-06-05 15:30:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:00:36] cg-vwn249.simple-grid.lan
[2025-06-05 16:00:36] apptainer works
[2025-06-05 16:00:36] Set ATHENA_PROC_NUMBER=8
[2025-06-05 16:00:36] Set ATHENA_CORE_NUMBER=8
[2025-06-05 16:00:36] Starting ATLAS job with PandaID=6668234398
[2025-06-05 16:00:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 21:39:54]  *** The last 200 lines of the pilot log: ***
[2025-06-05 21:39:54] 2025-06-05 19:19:12,002 | INFO     | extracted standard info from prmon json
[2025-06-05 21:39:54] 2025-06-05 19:19:12,002 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 21:39:54] 2025-06-05 19:19:12,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 21:39:54] 2025-06-05 19:19:12,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 21:39:54] 2025-06-05 19:19:12,002 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 21:39:54] 2025-06-05 19:19:12,008 | INFO     | fitting pss+swap vs Time
[2025-06-05 21:39:54] 2025-06-05 19:19:12,009 | INFO     | sum of square deviations: 8456158550.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,022 | INFO     | sum of deviations: 94951441427.00002
[2025-06-05 21:39:54] 2025-06-05 19:19:12,023 | INFO     | mean x: 1749141890.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,023 | INFO     | mean y: 2476582.1528239204
[2025-06-05 21:39:54] 2025-06-05 19:19:12,023 | INFO     | -- intersect: -19638066193.129826
[2025-06-05 21:39:54] 2025-06-05 19:19:12,023 | INFO     | intersect: -19638066193.129826
[2025-06-05 21:39:54] 2025-06-05 19:19:12,024 | INFO     | chi2: 8.458542514204229
[2025-06-05 21:39:54] 2025-06-05 19:19:12,024 | INFO     | sum of square deviations: 8041713570.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,027 | INFO     | sum of deviations: 113614768437.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,027 | INFO     | mean x: 1749141737.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,027 | INFO     | mean y: 2483350.125
[2025-06-05 21:39:54] 2025-06-05 19:19:12,027 | INFO     | -- intersect: -24709704138.346928
[2025-06-05 21:39:54] 2025-06-05 19:19:12,028 | INFO     | intersect: -24709704138.346928
[2025-06-05 21:39:54] 2025-06-05 19:19:12,028 | INFO     | chi2: 7.75432551723893
[2025-06-05 21:39:54] 2025-06-05 19:19:12,028 | INFO     | current chi2=7.75432551723893 (change=8.325512294614876 %)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,028 | INFO     | right removable region: 295
[2025-06-05 21:39:54] 2025-06-05 19:19:12,029 | INFO     | sum of square deviations: 8041713570.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,032 | INFO     | sum of deviations: -14132943142.499989
[2025-06-05 21:39:54] 2025-06-05 19:19:12,032 | INFO     | mean x: 1749142042.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,032 | INFO     | mean y: 2516706.070945946
[2025-06-05 21:39:54] 2025-06-05 19:19:12,032 | INFO     | -- intersect: 3076553703.2390504
[2025-06-05 21:39:54] 2025-06-05 19:19:12,032 | INFO     | intersect: 3076553703.2390504
[2025-06-05 21:39:54] 2025-06-05 19:19:12,049 | INFO     | chi2: 3.289652282237966
[2025-06-05 21:39:54] 2025-06-05 19:19:12,049 | INFO     | current chi2=3.289652282237966 (change=61.10852103995775 %)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,050 | INFO     | sum of square deviations: 7641036290.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,053 | INFO     | sum of deviations: -83915100851.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,053 | INFO     | mean x: 1749142195.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,053 | INFO     | mean y: 2543202.5773195876
[2025-06-05 21:39:54] 2025-06-05 19:19:12,053 | INFO     | -- intersect: 19211906713.683548
[2025-06-05 21:39:54] 2025-06-05 19:19:12,053 | INFO     | intersect: 19211906713.683548
[2025-06-05 21:39:54] 2025-06-05 19:19:12,054 | INFO     | chi2: 1.1411010767421557
[2025-06-05 21:39:54] 2025-06-05 19:19:12,054 | INFO     | current chi2=1.1411010767421557 (change=65.31241058809233 %)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,054 | INFO     | sum of square deviations: 7253894147.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,057 | INFO     | sum of deviations: -95250753268.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,057 | INFO     | mean x: 1749142347.5
[2025-06-05 21:39:54] 2025-06-05 19:19:12,057 | INFO     | mean y: 2547641.9615384615
[2025-06-05 21:39:54] 2025-06-05 19:19:12,057 | INFO     | -- intersect: 22970504271.246967
[2025-06-05 21:39:54] 2025-06-05 19:19:12,058 | INFO     | intersect: 22970504271.246967
[2025-06-05 21:39:54] 2025-06-05 19:19:12,058 | INFO     | chi2: 1.0307065740533725
[2025-06-05 21:39:54] 2025-06-05 19:19:12,058 | INFO     | current chi2=1.0307065740533725 (change=9.674384236316692 %)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,058 | INFO     | left removable region: 30
[2025-06-05 21:39:54] 2025-06-05 19:19:12,059 | INFO     | sum of square deviations: 5770452380.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,071 | INFO     | sum of deviations: -53954410574.00002
[2025-06-05 21:39:54] 2025-06-05 19:19:12,072 | INFO     | mean x: 1749142622.0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,072 | INFO     | mean y: 2547156.4679245283
[2025-06-05 21:39:54] 2025-06-05 19:19:12,072 | INFO     | -- intersect: 16357237042.994799
[2025-06-05 21:39:54] 2025-06-05 19:19:12,072 | INFO     | intersect: 16357237042.994799
[2025-06-05 21:39:54] 2025-06-05 19:19:12,073 | INFO     | chi2: 0.21687227787669672
[2025-06-05 21:39:54] 2025-06-05 19:19:12,073 | INFO     | -- intersect: 16357237042.994799
[2025-06-05 21:39:54] 2025-06-05 19:19:12,073 | INFO     | current memory leak: -9.35 B/s (using 265 data points, chi2=0.22)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | ..............................
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | . Timing measurements:
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | . get job = 0 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | . initial setup = 8 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | . payload setup = 181 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,074 | INFO     | . stage-in = 0 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,075 | INFO     | . payload execution = 18464 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,075 | INFO     | . stage-out = 3 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,075 | INFO     | . log creation = 1 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,075 | INFO     | ..............................
[2025-06-05 21:39:54] 2025-06-05 19:19:12,331 | INFO     | 
[2025-06-05 21:39:54] 2025-06-05 19:19:12,331 | INFO     | job summary report
[2025-06-05 21:39:54] 2025-06-05 19:19:12,331 | INFO     | --------------------------------------------------
[2025-06-05 21:39:54] 2025-06-05 19:19:12,331 | INFO     | PanDA job id: 6668234398
[2025-06-05 21:39:54] 2025-06-05 19:19:12,331 | INFO     | task id: 44871837
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | errors: (none)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | pilot state: finished 
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | transexitcode: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | exeerrorcode: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | exeerrordiag: 
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | exitcode: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | exitmsg: OK
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | cpuconsumptiontime: 69152 s
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | nevents: 400
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | neventsw: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:12,332 | INFO     | pid: 25646
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | pgrp: 25646
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | corecount: 8
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | event service: False
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | sizes: {0: 2397164, 1: 2397419, 12: 2397419, 23: 2397447, 34: 2397475, 44: 2397503, 55: 2397659, 66: 2397687, 76: 2397715, 87: 2397771, 93: 2398005, 98: 2398313, 1
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | --------------------------------------------------
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | 
[2025-06-05 21:39:54] 2025-06-05 19:19:12,333 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-06-05 21:39:54] 2025-06-05 19:19:12,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,598 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,598 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 21:39:54] 2025-06-05 19:19:12,598 | INFO     | job 6668234398 has completed (purged errors)
[2025-06-05 21:39:54] 2025-06-05 19:19:12,598 | INFO     | overall cleanup function is called
[2025-06-05 21:39:54] 2025-06-05 19:19:13,608 | INFO     | --- collectZombieJob: --- 10, [25646]
[2025-06-05 21:39:54] 2025-06-05 19:19:13,608 | INFO     | zombie collector waiting for pid 25646
[2025-06-05 21:39:54] 2025-06-05 19:19:13,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 21:39:54] 2025-06-05 19:19:13,609 | INFO     | collected zombie processes
[2025-06-05 21:39:54] 2025-06-05 19:19:13,609 | INFO     | will attempt to kill all subprocesses of pid=25646
[2025-06-05 21:39:54] 2025-06-05 19:19:13,730 | INFO     | process IDs to be killed: [25646] (in reverse order)
[2025-06-05 21:39:54] 2025-06-05 19:19:14,537 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 21:39:54] 2025-06-05 19:19:14,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 21:39:54] 2025-06-05 19:19:14,541 | INFO     | did not find any defunct processes belonging to 25646
[2025-06-05 21:39:54] 2025-06-05 19:19:14,545 | INFO     | did not find any defunct processes belonging to 25646
[2025-06-05 21:39:54] 2025-06-05 19:19:14,545 | INFO     | ready for new job
[2025-06-05 21:39:54] 2025-06-05 19:19:14,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 21:39:54] 2025-06-05 19:19:14,547 | INFO     | **************************************
[2025-06-05 21:39:54] 2025-06-05 19:19:14,548 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 21:39:54] 2025-06-05 19:19:14,548 | INFO     | **************************************
[2025-06-05 21:39:54] 2025-06-05 19:19:14,548 | INFO     | 
[2025-06-05 21:39:54] 2025-06-05 19:19:14,549 | INFO     | pilot is running in a VM
[2025-06-05 21:39:54] 2025-06-05 19:19:14,549 | INFO     | architecture information:
[2025-06-05 21:39:54] 2025-06-05 19:19:14,560 | INFO     | executing command: cat /etc/os-release
[2025-06-05 21:39:54] 2025-06-05 19:19:14,866 | INFO     | cat /etc/os-release:
[2025-06-05 21:39:54] NAME="CentOS Linux"
[2025-06-05 21:39:54] VERSION="7 (Core)"
[2025-06-05 21:39:54] ID="centos"
[2025-06-05 21:39:54] ID_LIKE="rhel fedora"
[2025-06-05 21:39:54] VERSION_ID="7"
[2025-06-05 21:39:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 21:39:54] ANSI_COLOR="0;31"
[2025-06-05 21:39:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 21:39:54] HOME_URL="https://www.centos.org/"
[2025-06-05 21:39:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 21:39:54] 
[2025-06-05 21:39:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 21:39:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 21:39:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 21:39:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 21:39:54] 
[2025-06-05 21:39:54] 2025-06-05 19:19:14,866 | INFO     | **************************************
[2025-06-05 21:39:54] 2025-06-05 19:19:15,370 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-06-05 21:39:54] 2025-06-05 19:19:15,560 | INFO     | sufficient remaining disk space (496230203392 B)
[2025-06-05 21:39:54] 2025-06-05 19:19:15,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | INFO     | update_server=False
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 21:39:54] 2025-06-05 19:19:15,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 21:39:54] 2025-06-05 19:19:16,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 21:39:54] 2025-06-05 19:19:16,109 | INFO     | all data control threads have been joined
[2025-06-05 21:39:54] 2025-06-05 19:19:16,417 | INFO     | all payload control threads have been joined
[2025-06-05 21:39:54] 2025-06-05 19:19:16,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:39:54] 2025-06-05 19:19:16,523 | INFO     | aborting loop
[2025-06-05 21:39:54] 2025-06-05 19:19:16,567 | INFO     | [job] retrieve thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:16,576 | INFO     | [job] validate thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:16,803 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:16,809 | INFO     | [payload] validate_post thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,104 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,114 | INFO     | [data] control thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,125 | INFO     | all job control threads have been joined
[2025-06-05 21:39:54] 2025-06-05 19:19:17,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:39:54] 2025-06-05 19:19:17,423 | INFO     | [payload] control thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,529 | INFO     | [job] job monitor thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,615 | INFO     | [payload] failed_post thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,686 | INFO     | [data] copytool_in thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,736 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:17,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:18,069 | INFO     | [data] copytool_out thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:18,131 | INFO     | [job] control thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:18,247 | INFO     | [job] queue monitor thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:18,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 21:39:54] 2025-06-05 19:19:22,542 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 21:39:54] 2025-06-05 19:19:24,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978336581440)>', '<ExcThread(monitor, started 139977606293248)>']
[2025-06-05 21:39:54] 2025-06-05 19:19:24,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 21:39:54] 2025-06-05 19:19:24,616 | INFO     | [monitor] control thread has ended
[2025-06-05 21:39:54] 2025-06-05 19:19:29,136 | INFO     | all workflow threads have been joined
[2025-06-05 21:39:54] 2025-06-05 19:19:29,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 21:39:54] 2025-06-05 19:19:29,136 | INFO     | traces error code: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:29,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 21:39:54] 2025-06-05 19:19:29,432 [wrapper] ==== pilot stdout END ====
[2025-06-05 21:39:54] 2025-06-05 19:19:29,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 21:39:54] 2025-06-05 19:19:29,456 [wrapper] pilotpid: 19026
[2025-06-05 21:39:54] 2025-06-05 19:19:29,465 [wrapper] Pilot exit status: 0
[2025-06-05 21:39:54] 2025-06-05 19:19:29,560 [wrapper] pandaids: 6668234398
[2025-06-05 21:39:54] 2025-06-05 19:19:29,633 [wrapper] cleanup supervisor_pilot 30652 19027
[2025-06-05 21:39:54] 2025-06-05 19:19:29,648 [wrapper] Test setup, not cleaning
[2025-06-05 21:39:54] 2025-06-05 19:19:29,660 [wrapper] apfmon messages muted
[2025-06-05 21:39:54] 2025-06-05 19:19:29,673 [wrapper] ==== wrapper stdout END ====
[2025-06-05 21:39:54] 2025-06-05 19:19:29,811 [wrapper] ==== wrapper stderr END ====
[2025-06-05 21:39:54]  *** Error codes and diagnostics ***
[2025-06-05 21:39:54]     "exeErrorCode": 0,
[2025-06-05 21:39:54]     "exeErrorDiag": "",
[2025-06-05 21:39:54]     "pilotErrorCode": 0,
[2025-06-05 21:39:54]     "pilotErrorDiag": "",
[2025-06-05 21:39:54]  *** Listing of results directory ***
[2025-06-05 21:39:54] total 418248
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc    495897 May 28 10:16 pilot3.tar.gz
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc      5111 May 28 10:58 queuedata.json
[2025-06-05 21:39:54] -rwx------. 1 boinc boinc     37140 May 28 10:59 runpilot2-wrapper.sh
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc       100 Jun  5 15:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 21:39:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 15:30 run_atlas
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc       105 Jun  5 15:30 job.xml
[2025-06-05 21:39:54] -rw-r--r--. 2 boinc boinc 224242674 Jun  5 15:30 EVNT.44871834._003195.pool.root.1
[2025-06-05 21:39:54] -rw-r--r--. 2 boinc boinc    508876 Jun  5 15:30 input.tar.gz
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc      6393 Jun  5 15:30 init_data.xml
[2025-06-05 21:39:54] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:30 start_atlas.sh
[2025-06-05 21:39:54] drwxrwx--x. 2 boinc boinc        68 Jun  5 15:30 shared
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc         0 Jun  5 15:30 boinc_lockfile
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc      2558 Jun  5 16:00 pandaJob.out
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc    983210 Jun  5 16:03 agis_schedconf.cvmfs.json
[2025-06-05 21:39:54] drwx------. 4 boinc boinc      4096 Jun  5 16:03 pilot3
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc 196186950 Jun  5 21:16 HITS.44871837._081807.pool.root.1
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc       531 Jun  5 21:16 boinc_task_state.xml
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc      1012 Jun  5 21:17 memory_monitor_summary.json
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc   1598969 Jun  5 21:17 agis_ddmendpoints.agis.ALL.json
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc    411398 Jun  5 21:17 log.44871837._081807.job.log.tgz.1
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc        95 Jun  5 21:18 pilot_heartbeat.json
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc      7689 Jun  5 21:19 heartbeat.json
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc      4540 Jun  5 21:19 pilotlog.txt
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc   1605211 Jun  5 21:19 log.44871837._081807.job.log.1
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc       357 Jun  5 21:19 output.list
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc       620 Jun  5 21:19 runtime_log
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc   2037760 Jun  5 21:19 result.tar.gz
[2025-06-05 21:39:54] -rw-------. 1 boinc boinc       657 Jun  5 21:19 VpGLDmnoRe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvjbKDmkZoMMn.diag
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc      8673 Jun  5 21:19 runtime_log.err
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc      8192 Jun  5 21:39 boinc_mmap_file
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc        28 Jun  5 21:39 wrapper_checkpoint.txt
[2025-06-05 21:39:54] -rw-r--r--. 1 boinc boinc     20509 Jun  5 21:39 stderr.txt
[2025-06-05 21:39:54] HITS file was successfully produced:
[2025-06-05 21:39:55] -rw-------. 1 boinc boinc 196186950 Jun  5 21:16 shared/HITS.pool.root.1
[2025-06-05 21:39:55]  *** Contents of shared directory: ***
[2025-06-05 21:39:55] total 413088
[2025-06-05 21:39:55] -rw-r--r--. 2 boinc boinc 224242674 Jun  5 15:30 ATLAS.root_0
[2025-06-05 21:39:55] -rw-r--r--. 2 boinc boinc    508876 Jun  5 15:30 input.tar.gz
[2025-06-05 21:39:55] -rw-r--r--. 2 boinc boinc     15093 Jun  5 15:30 start_atlas.sh
[2025-06-05 21:39:55] -rw-------. 1 boinc boinc 196186950 Jun  5 21:16 HITS.pool.root.1
[2025-06-05 21:39:55] -rw-------. 1 boinc boinc   2037760 Jun  5 21:19 result.tar.gz
21:39:56 (25060): run_atlas exited; CPU time 69405.545603
21:39:56 (25060): called boinc_finish(0)

</stderr_txt>
]]>

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