Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:38:14 (12566): wrapper (7.7.26015): starting
22:38:14 (12566): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:38:14] Arguments: --nthreads 8
[2025-06-04 22:38:14] Threads: 8
[2025-06-04 22:38:14] Checking for CVMFS
[2025-06-04 22:38:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:38:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:38:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:38:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:38:14] 2.11.2.0 2944 36461 94740 146802 3 1 14245112 20275200 1 130560 0 12691061 99.959 7642475 8473 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 22:38:14] CVMFS is ok
[2025-06-04 22:38:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 22:38:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 22:38:14] Further information can be found at the LHC@home message board.
[2025-06-04 22:38:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:38:14] Checking for apptainer binary...
[2025-06-04 22:38:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:38:14] Running /usr/bin/apptainer --version
[2025-06-04 22:38:14] apptainer version 1.3.2-1.el7
[2025-06-04 22:38:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:38:16] c-204-38.aglt2.org
[2025-06-04 22:38:16] apptainer works
[2025-06-04 22:38:16] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:38:16] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:38:16] Starting ATLAS job with PandaID=6680320076
[2025-06-04 22:38:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:27:47]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:27:47] 2025-06-05 04:27:28,710 | INFO     | mean x: 1749094381.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,711 | INFO     | mean y: 2512025.831775701
[2025-06-05 00:27:47] 2025-06-05 04:27:28,711 | INFO     | -- intersect: 40968202614.11889
[2025-06-05 00:27:47] 2025-06-05 04:27:28,711 | INFO     | intersect: 40968202614.11889
[2025-06-05 00:27:47] 2025-06-05 04:27:28,711 | INFO     | chi2: 2.449725874006347
[2025-06-05 00:27:47] 2025-06-05 04:27:28,712 | INFO     | sum of square deviations: 329031285.5
[2025-06-05 00:27:47] 2025-06-05 04:27:28,712 | INFO     | sum of deviations: -1148534138.499999
[2025-06-05 00:27:47] 2025-06-05 04:27:28,712 | INFO     | mean x: 1749094228.5
[2025-06-05 00:27:47] 2025-06-05 04:27:28,713 | INFO     | mean y: 2534488.225490196
[2025-06-05 00:27:47] 2025-06-05 04:27:28,713 | INFO     | -- intersect: 6108016007.506635
[2025-06-05 00:27:47] 2025-06-05 04:27:28,713 | INFO     | intersect: 6108016007.506635
[2025-06-05 00:27:47] 2025-06-05 04:27:28,713 | INFO     | chi2: 1.6887539771894216
[2025-06-05 00:27:47] 2025-06-05 04:27:28,713 | INFO     | current chi2=1.6887539771894216 (change=31.063553064915446 %)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,714 | INFO     | sum of square deviations: 282974608.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,714 | INFO     | sum of deviations: -562968450.9999969
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | mean x: 1749094076.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | mean y: 2536428.7731958763
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | -- intersect: 3482300177.112732
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | intersect: 3482300177.112732
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | chi2: 1.6914776013415904
[2025-06-05 00:27:47] 2025-06-05 04:27:28,715 | INFO     | current chi2=1.6914776013415904 (change=-0.16128010290177214 %)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,716 | INFO     | right removable region: 96
[2025-06-05 00:27:47] 2025-06-05 04:27:28,716 | INFO     | sum of square deviations: 329031285.5
[2025-06-05 00:27:47] 2025-06-05 04:27:28,716 | INFO     | sum of deviations: -25376600087.500004
[2025-06-05 00:27:47] 2025-06-05 04:27:28,716 | INFO     | mean x: 1749094533.5
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | mean y: 2560455.4607843137
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | -- intersect: 134901806964.5344
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | intersect: 134901806964.5344
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | chi2: 0.903876733585761
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | current chi2=0.903876733585761 (change=63.10294375478278 %)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,717 | INFO     | sum of square deviations: 282974608.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,718 | INFO     | sum of deviations: -22957508355.999996
[2025-06-05 00:27:47] 2025-06-05 04:27:28,718 | INFO     | mean x: 1749094686.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,718 | INFO     | mean y: 2552403.432989691
[2025-06-05 00:27:47] 2025-06-05 04:27:28,718 | INFO     | -- intersect: 141905234601.9721
[2025-06-05 00:27:47] 2025-06-05 04:27:28,718 | INFO     | intersect: 141905234601.9721
[2025-06-05 00:27:47] 2025-06-05 04:27:28,719 | INFO     | chi2: 0.9043622963786688
[2025-06-05 00:27:47] 2025-06-05 04:27:28,719 | INFO     | current chi2=0.9043622963786688 (change=-0.05372002341309509 %)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,719 | INFO     | left removable region: 20
[2025-06-05 00:27:47] 2025-06-05 04:27:28,719 | INFO     | sum of square deviations: 136095575.0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,719 | INFO     | sum of deviations: -9194772658.000002
[2025-06-05 00:27:47] 2025-06-05 04:27:28,720 | INFO     | mean x: 1749094655.5
[2025-06-05 00:27:47] 2025-06-05 04:27:28,720 | INFO     | mean y: 2561528.052631579
[2025-06-05 00:27:47] 2025-06-05 04:27:28,720 | INFO     | -- intersect: 118173396359.71658
[2025-06-05 00:27:47] 2025-06-05 04:27:28,720 | INFO     | intersect: 118173396359.71658
[2025-06-05 00:27:47] 2025-06-05 04:27:28,721 | INFO     | chi2: 0.08120682081415123
[2025-06-05 00:27:47] 2025-06-05 04:27:28,721 | INFO     | -- intersect: 118173396359.71658
[2025-06-05 00:27:47] 2025-06-05 04:27:28,722 | INFO     | sufficient remaining disk space (18608029696 B)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,722 | INFO     | current memory leak: -67.56 B/s (using 76 data points, chi2=0.08)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,723 | INFO     | ..............................
[2025-06-05 00:27:47] 2025-06-05 04:27:28,723 | INFO     | . Timing measurements:
[2025-06-05 00:27:47] 2025-06-05 04:27:28,723 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,724 | INFO     | . get job = 0 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,724 | INFO     | . initial setup = 2 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,724 | INFO     | . payload setup = 12 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,724 | INFO     | . stage-in = 0 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,725 | INFO     | . payload execution = 6492 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,725 | INFO     | . stage-out = 0 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,725 | INFO     | . log creation = 0 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,725 | INFO     | ..............................
[2025-06-05 00:27:47] 2025-06-05 04:27:28,824 | INFO     | 
[2025-06-05 00:27:47] 2025-06-05 04:27:28,824 | INFO     | job summary report
[2025-06-05 00:27:47] 2025-06-05 04:27:28,824 | INFO     | --------------------------------------------------
[2025-06-05 00:27:47] 2025-06-05 04:27:28,824 | INFO     | PanDA job id: 6680320076
[2025-06-05 00:27:47] 2025-06-05 04:27:28,824 | INFO     | task id: 45006595
[2025-06-05 00:27:47] 2025-06-05 04:27:28,825 | INFO     | errors: (none)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,825 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:27:47] 2025-06-05 04:27:28,825 | INFO     | pilot state: finished 
[2025-06-05 00:27:47] 2025-06-05 04:27:28,825 | INFO     | transexitcode: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | exeerrorcode: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | exeerrordiag: 
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | exitcode: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | exitmsg: OK
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | cpuconsumptiontime: 48723 s
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | nevents: 400
[2025-06-05 00:27:47] 2025-06-05 04:27:28,826 | INFO     | neventsw: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | pid: 23501
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | pgrp: 23501
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | corecount: 8
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | event service: False
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | sizes: {0: 2396463, 1: 2397319, 7: 2397525, 12: 2397553, 6508: 2424427, 6509: 2424426, 6510: 2433551, 6512: 2433607, 6518: 2433777}
[2025-06-05 00:27:47] 2025-06-05 04:27:28,827 | INFO     | --------------------------------------------------
[2025-06-05 00:27:47] 2025-06-05 04:27:28,828 | INFO     | 
[2025-06-05 00:27:47] 2025-06-05 04:27:28,828 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-05 00:27:47] 2025-06-05 04:27:28,831 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6680320076: 4090244 B (within 2537553920 B limit)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,832 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6680320076/HITS.45006595._057026.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,833 | INFO     | total size of present files: 0 B (workdir size: 4090244 B)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,833 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6680320076/HITS.45006595._057026.pool.root.1 since it does not exist
[2025-06-05 00:27:47] 2025-06-05 04:27:28,855 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,889 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,889 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,892 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:27:47] 2025-06-05 04:27:28,893 | INFO     | job 6680320076 has completed (purged errors)
[2025-06-05 00:27:47] 2025-06-05 04:27:28,893 | INFO     | overall cleanup function is called
[2025-06-05 00:27:47] 2025-06-05 04:27:28,940 | INFO     | number of running child processes to parent process 23501: 1
[2025-06-05 00:27:47] 2025-06-05 04:27:28,940 | INFO     | maximum number of monitored processes: 6
[2025-06-05 00:27:47] 2025-06-05 04:27:28,940 | INFO     | aborting job monitoring since job object (job id=6680320076) has expired
[2025-06-05 00:27:47] 2025-06-05 04:27:29,902 | INFO     | --- collectZombieJob: --- 10, [23501]
[2025-06-05 00:27:47] 2025-06-05 04:27:29,902 | INFO     | zombie collector waiting for pid 23501
[2025-06-05 00:27:47] 2025-06-05 04:27:29,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:27:47] 2025-06-05 04:27:29,903 | INFO     | collected zombie processes
[2025-06-05 00:27:47] 2025-06-05 04:27:29,903 | INFO     | will attempt to kill all subprocesses of pid=23501
[2025-06-05 00:27:47] 2025-06-05 04:27:29,989 | INFO     | process IDs to be killed: [23501] (in reverse order)
[2025-06-05 00:27:47] 2025-06-05 04:27:30,048 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:27:47] 2025-06-05 04:27:30,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:27:47] 2025-06-05 04:27:30,053 | INFO     | did not find any defunct processes belonging to 23501
[2025-06-05 00:27:47] 2025-06-05 04:27:30,056 | INFO     | did not find any defunct processes belonging to 23501
[2025-06-05 00:27:47] 2025-06-05 04:27:30,057 | INFO     | ready for new job
[2025-06-05 00:27:47] 2025-06-05 04:27:30,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:27:47] 2025-06-05 04:27:30,058 | INFO     | **************************************
[2025-06-05 00:27:47] 2025-06-05 04:27:30,058 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:27:47] 2025-06-05 04:27:30,058 | INFO     | **************************************
[2025-06-05 00:27:47] 2025-06-05 04:27:30,058 | INFO     | 
[2025-06-05 00:27:47] 2025-06-05 04:27:30,059 | INFO     | architecture information:
[2025-06-05 00:27:47] 2025-06-05 04:27:30,059 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:27:47] 2025-06-05 04:27:30,077 | INFO     | cat /etc/os-release:
[2025-06-05 00:27:47] NAME="CentOS Linux"
[2025-06-05 00:27:47] VERSION="7 (Core)"
[2025-06-05 00:27:47] ID="centos"
[2025-06-05 00:27:47] ID_LIKE="rhel fedora"
[2025-06-05 00:27:47] VERSION_ID="7"
[2025-06-05 00:27:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:27:47] ANSI_COLOR="0;31"
[2025-06-05 00:27:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:27:47] HOME_URL="https://www.centos.org/"
[2025-06-05 00:27:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:27:47] 
[2025-06-05 00:27:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:27:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:27:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:27:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:27:47] 
[2025-06-05 00:27:47] 2025-06-05 04:27:30,078 | INFO     | **************************************
[2025-06-05 00:27:47] 2025-06-05 04:27:30,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-05 00:27:47] 2025-06-05 04:27:30,601 | INFO     | sufficient remaining disk space (18613272576 B)
[2025-06-05 00:27:47] 2025-06-05 04:27:30,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:27:47] 2025-06-05 04:27:30,602 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:27:47] 2025-06-05 04:27:30,602 | INFO     | update_server=False
[2025-06-05 00:27:47] 2025-06-05 04:27:30,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:27:47] 2025-06-05 04:27:30,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:27:47] 2025-06-05 04:27:30,603 | INFO     | aborting loop
[2025-06-05 00:27:47] 2025-06-05 04:27:30,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:27:47] 2025-06-05 04:27:30,755 | INFO     | all payload control threads have been joined
[2025-06-05 00:27:47] 2025-06-05 04:27:30,804 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:27:47] 2025-06-05 04:27:30,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:27:47] 2025-06-05 04:27:30,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:27:47] 2025-06-05 04:27:31,190 | INFO     | all data control threads have been joined
[2025-06-05 00:27:47] 2025-06-05 04:27:31,608 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,609 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,610 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,649 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,760 | INFO     | [payload] control thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,815 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:31,862 | INFO     | all job control threads have been joined
[2025-06-05 00:27:47] 2025-06-05 04:27:31,902 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:27:47] 2025-06-05 04:27:32,196 | INFO     | [data] control thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:32,480 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:32,688 | INFO     | [job] validate thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:32,689 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:32,867 | INFO     | [job] control thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:33,029 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:33,110 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:33,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:27:47] 2025-06-05 04:27:33,903 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:37,144 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:40,881 | INFO     | job.realtimelogging is not enabled
[2025-06-05 00:27:47] 2025-06-05 04:27:41,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:27:47] 2025-06-05 04:27:41,924 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140194538096448)>', '<ExcThread(monitor, started 140193285789440)>']
[2025-06-05 00:27:47] 2025-06-05 04:27:42,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:27:47] 2025-06-05 04:27:42,851 | INFO     | [monitor] control thread has ended
[2025-06-05 00:27:47] 2025-06-05 04:27:46,938 | INFO     | all workflow threads have been joined
[2025-06-05 00:27:47] 2025-06-05 04:27:46,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:27:47] 2025-06-05 04:27:46,939 | INFO     | traces error code: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:46,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:27:47] 2025-06-05 04:27:47,067 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:27:47] 2025-06-05 04:27:47,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:27:47] 2025-06-05 04:27:47,076 [wrapper] pilotpid: 16231
[2025-06-05 00:27:47] 2025-06-05 04:27:47,081 [wrapper] Pilot exit status: 0
[2025-06-05 00:27:47] 2025-06-05 04:27:47,100 [wrapper] pandaids: 6680320076
[2025-06-05 00:27:47] 2025-06-05 04:27:47,146 [wrapper] cleanup supervisor_pilot 28216 16232
[2025-06-05 00:27:47] 2025-06-05 04:27:47,151 [wrapper] Test setup, not cleaning
[2025-06-05 00:27:47] 2025-06-05 04:27:47,155 [wrapper] apfmon messages muted
[2025-06-05 00:27:47] 2025-06-05 04:27:47,160 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:27:47] 2025-06-05 04:27:47,164 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:27:47]  *** Error codes and diagnostics ***
[2025-06-05 00:27:47]     "exeErrorCode": 0,
[2025-06-05 00:27:47]     "exeErrorDiag": "",
[2025-06-05 00:27:47]     "pilotErrorCode": 0,
[2025-06-05 00:27:47]     "pilotErrorDiag": "",
[2025-06-05 00:27:47]  *** Listing of results directory ***
[2025-06-05 00:27:47] total 389224
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 22:18 pilot3.tar.gz
[2025-06-05 00:27:47] -rwx------ 1 boincer umatlas     37140 Jun  4 22:37 runpilot2-wrapper.sh
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 22:37 queuedata.json
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas       100 Jun  4 22:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:27:47] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 22:38 run_atlas
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas       105 Jun  4 22:38 job.xml
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas 214723723 Jun  4 22:38 EVNT.45006593._001913.pool.root.1
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 22:38 start_atlas.sh
[2025-06-05 00:27:47] drwxrwx--x 2 boincer umatlas      4096 Jun  4 22:38 shared
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas    508886 Jun  4 22:38 input.tar.gz
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas         0 Jun  4 22:38 boinc_lockfile
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 22:38 pandaJob.out
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas    987109 Jun  4 22:38 agis_schedconf.cvmfs.json
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas   1598969 Jun  4 22:38 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:27:47] drwx------ 4 boincer umatlas      4096 Jun  4 22:38 pilot3
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas      5905 Jun  5 00:20 init_data.xml
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas 178128118 Jun  5 00:26 HITS.45006595._057026.pool.root.1
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas        95 Jun  5 00:27 pilot_heartbeat.json
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas       530 Jun  5 00:27 boinc_task_state.xml
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas      1049 Jun  5 00:27 memory_monitor_summary.json
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas    338787 Jun  5 00:27 log.45006595._057026.job.log.tgz.1
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas      7752 Jun  5 00:27 heartbeat.json
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas        27 Jun  5 00:27 wrapper_checkpoint.txt
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas      8192 Jun  5 00:27 boinc_mmap_file
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas      4425 Jun  5 00:27 pilotlog.txt
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas    603284 Jun  5 00:27 log.45006595._057026.job.log.1
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas       357 Jun  5 00:27 output.list
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas       620 Jun  5 00:27 runtime_log
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas    962560 Jun  5 00:27 result.tar.gz
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas       660 Jun  5 00:27 YKHMDmJfFh7n9Rq4apOajLDm4fhM0noT9bVof3QYDmn4aKDmHXo37n.diag
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas      8659 Jun  5 00:27 runtime_log.err
[2025-06-05 00:27:47] -rw-r--r-- 1 boincer umatlas     21145 Jun  5 00:27 stderr.txt
[2025-06-05 00:27:47] HITS file was successfully produced:
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas 178128118 Jun  5 00:26 shared/HITS.pool.root.1
[2025-06-05 00:27:47]  *** Contents of shared directory: ***
[2025-06-05 00:27:47] total 385108
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas 214723723 Jun  4 22:38 ATLAS.root_0
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 22:38 start_atlas.sh
[2025-06-05 00:27:47] -rw-r--r-- 2 boincer umatlas    508886 Jun  4 22:38 input.tar.gz
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas 178128118 Jun  5 00:26 HITS.pool.root.1
[2025-06-05 00:27:47] -rw------- 1 boincer umatlas    962560 Jun  5 00:27 result.tar.gz
00:27:49 (12566): run_atlas exited; CPU time 48681.270022
00:27:49 (12566): called boinc_finish(0)

</stderr_txt>
]]>

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