Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:59:48 (16450): wrapper (7.7.26015): starting
08:59:48 (16450): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 08:59:48] Arguments: --nthreads 8
[2025-06-05 08:59:48] Threads: 8
[2025-06-05 08:59:48] Checking for CVMFS
[2025-06-05 08:59:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 08:59:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 08:59:49] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 08:59:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 08:59:50] 2.11.2.0 20118 34332 90972 146809 0 59 18345056 25165824 3132 130560 0 17523899 99.812 19677145 2042 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 08:59:50] CVMFS is ok
[2025-06-05 08:59:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:59:50] Checking for apptainer binary...
[2025-06-05 08:59:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 08:59:50] Running /usr/bin/apptainer --version
[2025-06-05 08:59:50] apptainer version 1.3.2-1.el7
[2025-06-05 08:59:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:59:59] cg-vwn344.simple-grid.lan
[2025-06-05 08:59:59] apptainer works
[2025-06-05 08:59:59] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:59:59] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:59:59] Starting ATLAS job with PandaID=6680312410
[2025-06-05 08:59:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:05:42]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:05:42] 2025-06-05 10:51:26,707 | INFO     | extracted standard info from prmon json
[2025-06-05 13:05:42] 2025-06-05 10:51:26,707 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:05:42] 2025-06-05 10:51:26,707 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:05:42] 2025-06-05 10:51:26,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:05:42] 2025-06-05 10:51:26,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:05:42] 2025-06-05 10:51:26,712 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:05:42] 2025-06-05 10:51:26,713 | INFO     | sum of square deviations: 3081654242.9953523
[2025-06-05 13:05:42] 2025-06-05 10:51:26,717 | INFO     | sum of deviations: 101633900726.32082
[2025-06-05 13:05:42] 2025-06-05 10:51:26,717 | INFO     | mean x: 1749114032.004651
[2025-06-05 13:05:42] 2025-06-05 10:51:26,717 | INFO     | mean y: 2399240.6790697672
[2025-06-05 13:05:42] 2025-06-05 10:51:26,717 | INFO     | -- intersect: -57683917221.28215
[2025-06-05 13:05:42] 2025-06-05 10:51:26,717 | INFO     | intersect: -57683917221.28215
[2025-06-05 13:05:42] 2025-06-05 10:51:26,718 | INFO     | chi2: 7.673507170999912
[2025-06-05 13:05:42] 2025-06-05 10:51:26,718 | INFO     | sum of square deviations: 2871613400.495233
[2025-06-05 13:05:42] 2025-06-05 10:51:26,720 | INFO     | sum of deviations: 113087582279.0857
[2025-06-05 13:05:42] 2025-06-05 10:51:26,720 | INFO     | mean x: 1749113879.504762
[2025-06-05 13:05:42] 2025-06-05 10:51:26,720 | INFO     | mean y: 2407362.4142857143
[2025-06-05 13:05:42] 2025-06-05 10:51:26,720 | INFO     | -- intersect: -68879796533.79013
[2025-06-05 13:05:42] 2025-06-05 10:51:26,721 | INFO     | intersect: -68879796533.79013
[2025-06-05 13:05:42] 2025-06-05 10:51:26,721 | INFO     | chi2: 6.968701693669884
[2025-06-05 13:05:42] 2025-06-05 10:51:26,721 | INFO     | current chi2=6.968701693669884 (change=9.184919771674458 %)
[2025-06-05 13:05:42] 2025-06-05 10:51:26,721 | INFO     | right removable region: 209
[2025-06-05 13:05:42] 2025-06-05 10:51:26,722 | INFO     | sum of square deviations: 2871612790.495233
[2025-06-05 13:05:42] 2025-06-05 10:51:26,723 | INFO     | sum of deviations: 27907620033.657127
[2025-06-05 13:05:42] 2025-06-05 10:51:26,723 | INFO     | mean x: 1749114184.504762
[2025-06-05 13:05:42] 2025-06-05 10:51:26,723 | INFO     | mean y: 2452727.842857143
[2025-06-05 13:05:42] 2025-06-05 10:51:26,723 | INFO     | -- intersect: -16996222796.311163
[2025-06-05 13:05:42] 2025-06-05 10:51:26,724 | INFO     | intersect: -16996222796.311163
[2025-06-05 13:05:42] 2025-06-05 10:51:26,724 | INFO     | chi2: 2.700220101190118
[2025-06-05 13:05:42] 2025-06-05 10:51:26,724 | INFO     | current chi2=2.700220101190118 (change=64.81113471301728 %)
[2025-06-05 13:05:42] 2025-06-05 10:51:26,724 | INFO     | sum of square deviations: 2671338962.9951305
[2025-06-05 13:05:42] 2025-06-05 10:51:26,726 | INFO     | sum of deviations: -16574885774.190243
[2025-06-05 13:05:42] 2025-06-05 10:51:26,726 | INFO     | mean x: 1749114337.004878
[2025-06-05 13:05:42] 2025-06-05 10:51:26,726 | INFO     | mean y: 2486472.1902439026
[2025-06-05 13:05:42] 2025-06-05 10:51:26,726 | INFO     | -- intersect: 10855235128.747461
[2025-06-05 13:05:42] 2025-06-05 10:51:26,726 | INFO     | intersect: 10855235128.747461
[2025-06-05 13:05:42] 2025-06-05 10:51:26,732 | INFO     | chi2: 0.9029601544191685
[2025-06-05 13:05:42] 2025-06-05 10:51:26,732 | INFO     | current chi2=0.9029601544191685 (change=66.55975733158974 %)
[2025-06-05 13:05:42] 2025-06-05 10:51:26,733 | INFO     | sum of square deviations: 2480600197.995003
[2025-06-05 13:05:42] 2025-06-05 10:51:26,734 | INFO     | sum of deviations: -24182327385.79
[2025-06-05 13:05:42] 2025-06-05 10:51:26,734 | INFO     | mean x: 1749114489.505
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | mean y: 2492484.79
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | -- intersect: 17053873539.514912
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | intersect: 17053873539.514912
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | chi2: 0.8078696946887384
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | current chi2=0.8078696946887384 (change=10.53096964080296 %)
[2025-06-05 13:05:42] 2025-06-05 10:51:26,735 | INFO     | left removable region: 30
[2025-06-05 13:05:42] 2025-06-05 10:51:26,736 | INFO     | sum of square deviations: 1778372528.994417
[2025-06-05 13:05:42] 2025-06-05 10:51:26,737 | INFO     | sum of deviations: -8200739847.385474
[2025-06-05 13:05:42] 2025-06-05 10:51:26,737 | INFO     | mean x: 1749114764.0055866
[2025-06-05 13:05:42] 2025-06-05 10:51:26,737 | INFO     | mean y: 2501309.38547486
[2025-06-05 13:05:42] 2025-06-05 10:51:26,737 | INFO     | -- intersect: 8068322676.375275
[2025-06-05 13:05:42] 2025-06-05 10:51:26,741 | INFO     | intersect: 8068322676.375275
[2025-06-05 13:05:42] 2025-06-05 10:51:26,741 | INFO     | chi2: 0.014949357064051523
[2025-06-05 13:05:42] 2025-06-05 10:51:26,742 | INFO     | -- intersect: 8068322676.375275
[2025-06-05 13:05:42] 2025-06-05 10:51:26,742 | INFO     | current memory leak: -4.61 B/s (using 179 data points, chi2=0.01)
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | ..............................
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . Timing measurements:
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . get job = 0 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . initial setup = 10 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . payload setup = 161 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . stage-in = 0 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,743 | INFO     | . payload execution = 13230 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,744 | INFO     | . stage-out = 3 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,744 | INFO     | . log creation = 1 s
[2025-06-05 13:05:42] 2025-06-05 10:51:26,744 | INFO     | ..............................
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | 
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | job summary report
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | --------------------------------------------------
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | PanDA job id: 6680312410
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | task id: 45006595
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | errors: (none)
[2025-06-05 13:05:42] 2025-06-05 10:51:27,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | pilot state: finished 
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | transexitcode: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | exeerrorcode: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | exeerrordiag: 
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | exitcode: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | exitmsg: OK
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | cpuconsumptiontime: 48900 s
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | nevents: 400
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | neventsw: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | pid: 2887
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | pgrp: 2887
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | corecount: 8
[2025-06-05 13:05:42] 2025-06-05 10:51:27,087 | INFO     | event service: False
[2025-06-05 13:05:42] 2025-06-05 10:51:27,088 | INFO     | sizes: {0: 2397014, 1: 2397269, 12: 2397269, 23: 2397297, 34: 2397325, 44: 2397353, 55: 2397509, 66: 2397537, 76: 2397565, 85: 2397827, 87: 2397855, 13395: 2427903
[2025-06-05 13:05:42] 2025-06-05 10:51:27,088 | INFO     | --------------------------------------------------
[2025-06-05 13:05:42] 2025-06-05 10:51:27,088 | INFO     | 
[2025-06-05 13:05:42] 2025-06-05 10:51:27,088 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 13:05:42] 2025-06-05 10:51:27,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:05:42] 2025-06-05 10:51:27,644 | INFO     | job 6680312410 has completed (purged errors)
[2025-06-05 13:05:42] 2025-06-05 10:51:27,645 | INFO     | overall cleanup function is called
[2025-06-05 13:05:42] 2025-06-05 10:51:28,654 | INFO     | --- collectZombieJob: --- 10, [2887]
[2025-06-05 13:05:42] 2025-06-05 10:51:28,654 | INFO     | zombie collector waiting for pid 2887
[2025-06-05 13:05:42] 2025-06-05 10:51:28,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:05:42] 2025-06-05 10:51:28,654 | INFO     | collected zombie processes
[2025-06-05 13:05:42] 2025-06-05 10:51:28,654 | INFO     | will attempt to kill all subprocesses of pid=2887
[2025-06-05 13:05:42] 2025-06-05 10:51:28,765 | INFO     | process IDs to be killed: [2887] (in reverse order)
[2025-06-05 13:05:42] 2025-06-05 10:51:29,608 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:05:42] 2025-06-05 10:51:29,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:05:42] 2025-06-05 10:51:29,612 | INFO     | did not find any defunct processes belonging to 2887
[2025-06-05 13:05:42] 2025-06-05 10:51:29,616 | INFO     | did not find any defunct processes belonging to 2887
[2025-06-05 13:05:42] 2025-06-05 10:51:29,622 | INFO     | ready for new job
[2025-06-05 13:05:42] 2025-06-05 10:51:29,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:05:42] 2025-06-05 10:51:29,624 | INFO     | **************************************
[2025-06-05 13:05:42] 2025-06-05 10:51:29,624 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:05:42] 2025-06-05 10:51:29,624 | INFO     | **************************************
[2025-06-05 13:05:42] 2025-06-05 10:51:29,625 | INFO     | 
[2025-06-05 13:05:42] 2025-06-05 10:51:29,625 | INFO     | pilot is running in a VM
[2025-06-05 13:05:42] 2025-06-05 10:51:29,625 | INFO     | architecture information:
[2025-06-05 13:05:42] 2025-06-05 10:51:29,631 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:05:42] 2025-06-05 10:51:29,681 | INFO     | cat /etc/os-release:
[2025-06-05 13:05:42] NAME="CentOS Linux"
[2025-06-05 13:05:42] VERSION="7 (Core)"
[2025-06-05 13:05:42] ID="centos"
[2025-06-05 13:05:42] ID_LIKE="rhel fedora"
[2025-06-05 13:05:42] VERSION_ID="7"
[2025-06-05 13:05:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:05:42] ANSI_COLOR="0;31"
[2025-06-05 13:05:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:05:42] HOME_URL="https://www.centos.org/"
[2025-06-05 13:05:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:05:42] 
[2025-06-05 13:05:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:05:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:05:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:05:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:05:42] 
[2025-06-05 13:05:42] 2025-06-05 10:51:29,682 | INFO     | **************************************
[2025-06-05 13:05:42] 2025-06-05 10:51:29,704 | INFO     | 13695s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 13:05:42] 2025-06-05 10:51:30,185 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 13:05:42] 2025-06-05 10:51:30,247 | INFO     | sufficient remaining disk space (497199087616 B)
[2025-06-05 13:05:42] 2025-06-05 10:51:30,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:05:42] 2025-06-05 10:51:30,247 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:05:42] 2025-06-05 10:51:30,248 | INFO     | update_server=False
[2025-06-05 13:05:42] 2025-06-05 10:51:30,248 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:05:42] 2025-06-05 10:51:30,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:05:42] 2025-06-05 10:51:30,708 | INFO     | all payload control threads have been joined
[2025-06-05 13:05:42] 2025-06-05 10:51:30,710 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:05:42] 2025-06-05 10:51:30,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:05:42] 2025-06-05 10:51:30,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:05:42] 2025-06-05 10:51:30,713 | INFO     | all job control threads have been joined
[2025-06-05 13:05:42] 2025-06-05 10:51:30,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:05:42] 2025-06-05 10:51:30,883 | INFO     | aborting loop
[2025-06-05 13:05:42] 2025-06-05 10:51:31,092 | INFO     | all data control threads have been joined
[2025-06-05 13:05:42] 2025-06-05 10:51:31,253 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,309 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,632 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,695 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,714 | INFO     | [payload] control thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,719 | INFO     | [job] control thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,756 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,889 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,920 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:31,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:05:42] 2025-06-05 10:51:32,098 | INFO     | [data] control thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:32,136 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:32,141 | INFO     | [job] validate thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:32,262 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:32,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:05:42] 2025-06-05 10:51:32,937 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:36,296 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:05:42] 2025-06-05 10:51:37,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140313866323776)>', '<ExcThread(monitor, started 140313125435136)>']
[2025-06-05 13:05:42] 2025-06-05 10:51:38,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:05:42] 2025-06-05 10:51:38,759 | INFO     | [monitor] control thread has ended
[2025-06-05 13:05:42] 2025-06-05 10:51:42,938 | INFO     | all workflow threads have been joined
[2025-06-05 13:05:42] 2025-06-05 10:51:42,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:05:42] 2025-06-05 10:51:42,938 | INFO     | traces error code: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:42,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:05:42] 2025-06-05 10:51:43,347 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:05:42] 2025-06-05 10:51:43,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:05:42] 2025-06-05 10:51:43,486 [wrapper] pilotpid: 24680
[2025-06-05 13:05:42] 2025-06-05 10:51:43,584 [wrapper] Pilot exit status: 0
[2025-06-05 13:05:42] 2025-06-05 10:51:44,052 [wrapper] pandaids: 6680312410
[2025-06-05 13:05:42] 2025-06-05 10:51:44,905 [wrapper] cleanup supervisor_pilot 10514 24681
[2025-06-05 13:05:42] 2025-06-05 10:51:45,028 [wrapper] Test setup, not cleaning
[2025-06-05 13:05:42] 2025-06-05 10:51:45,138 [wrapper] apfmon messages muted
[2025-06-05 13:05:42] 2025-06-05 10:51:45,242 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:05:42] 2025-06-05 10:51:45,347 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:05:42]  *** Error codes and diagnostics ***
[2025-06-05 13:05:42]     "exeErrorCode": 0,
[2025-06-05 13:05:42]     "exeErrorDiag": "",
[2025-06-05 13:05:42]     "pilotErrorCode": 0,
[2025-06-05 13:05:42]     "pilotErrorDiag": "",
[2025-06-05 13:05:42]  *** Listing of results directory ***
[2025-06-05 13:05:42] total 388500
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc    495897 Jun  5 04:18 pilot3.tar.gz
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc      5111 Jun  5 04:23 queuedata.json
[2025-06-05 13:05:42] -rwx------. 1 boinc boinc     37140 Jun  5 04:24 runpilot2-wrapper.sh
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc       100 Jun  5 08:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:05:42] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 08:59 run_atlas
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc       105 Jun  5 08:59 job.xml
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc      6391 Jun  5 08:59 init_data.xml
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc 213303256 Jun  5 08:59 EVNT.45006593._001936.pool.root.1
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc     15093 Jun  5 08:59 start_atlas.sh
[2025-06-05 13:05:42] drwxrwx--x. 2 boinc boinc        68 Jun  5 08:59 shared
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc    508888 Jun  5 08:59 input.tar.gz
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc         0 Jun  5 08:59 boinc_lockfile
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc      2524 Jun  5 08:59 pandaJob.out
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc    986926 Jun  5 09:03 agis_schedconf.cvmfs.json
[2025-06-05 13:05:42] drwx------. 4 boinc boinc      4096 Jun  5 09:03 pilot3
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc 177567328 Jun  5 12:48 HITS.45006595._057024.pool.root.1
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc       531 Jun  5 12:48 boinc_task_state.xml
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc      1016 Jun  5 12:49 memory_monitor_summary.json
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc   1598969 Jun  5 12:49 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc    394946 Jun  5 12:49 log.45006595._057024.job.log.tgz.1
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc        95 Jun  5 12:50 pilot_heartbeat.json
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc      7694 Jun  5 12:51 heartbeat.json
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc      4532 Jun  5 12:51 pilotlog.txt
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc   1170302 Jun  5 12:51 log.45006595._057024.job.log.1
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc       357 Jun  5 12:51 output.list
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc       620 Jun  5 12:51 runtime_log
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc   1587200 Jun  5 12:51 result.tar.gz
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc      8659 Jun  5 12:51 runtime_log.err
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc       656 Jun  5 12:51 A75NDmcSFh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmO4nKDmMrPVNm.diag
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc      8192 Jun  5 13:05 boinc_mmap_file
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc        28 Jun  5 13:05 wrapper_checkpoint.txt
[2025-06-05 13:05:42] -rw-r--r--. 1 boinc boinc     20556 Jun  5 13:05 stderr.txt
[2025-06-05 13:05:42] HITS file was successfully produced:
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc 177567328 Jun  5 12:48 shared/HITS.pool.root.1
[2025-06-05 13:05:42]  *** Contents of shared directory: ***
[2025-06-05 13:05:42] total 383780
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc 213303256 Jun  5 08:59 ATLAS.root_0
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc     15093 Jun  5 08:59 start_atlas.sh
[2025-06-05 13:05:42] -rw-r--r--. 2 boinc boinc    508888 Jun  5 08:59 input.tar.gz
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc 177567328 Jun  5 12:48 HITS.pool.root.1
[2025-06-05 13:05:42] -rw-------. 1 boinc boinc   1587200 Jun  5 12:51 result.tar.gz
13:05:44 (16450): run_atlas exited; CPU time 49075.718852
13:05:44 (16450): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN