Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
07:12:06 (3873833): wrapper (7.7.26015): starting
07:12:06 (3873833): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 07:12:06] Arguments: --nthreads 4
[2025-06-05 07:12:06] Threads: 4
[2025-06-05 07:12:06] Checking for CVMFS
[2025-06-05 07:12:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 07:12:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 07:12:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 07:12:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 07:12:07] 2.9.2.0 2600721 3408 94876 146806 1 56 32609667 36864001 0 130560 0 3402206 99.993 835494 33892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-05 07:12:07] CVMFS is ok
[2025-06-05 07:12:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 07:12:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 07:12:07] Further information can be found at the LHC@home message board.
[2025-06-05 07:12:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 07:12:07] Checking for apptainer binary...
[2025-06-05 07:12:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 07:12:07] Running /usr/bin/apptainer --version
[2025-06-05 07:12:07] apptainer version 1.3.6-6.1
[2025-06-05 07:12:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 07:12:07] thA314a
[2025-06-05 07:12:07] apptainer works
[2025-06-05 07:12:07] Set ATHENA_PROC_NUMBER=4
[2025-06-05 07:12:07] Set ATHENA_CORE_NUMBER=4
[2025-06-05 07:12:07] Starting ATLAS job with PandaID=6667731382
[2025-06-05 07:12:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:43:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:43:08]  status_code=0
[2025-06-05 08:43:08]  storage_token=
[2025-06-05 08:43:08]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6667731382/log.44871837._075393.job.log.tgz.1
[2025-06-05 08:43:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/b7/log.44871837._075393.job.log.tgz.1
[2025-06-05 08:43:08]  workdir=None
[2025-06-05 08:43:08] ]
[2025-06-05 08:43:08] 2025-06-05 06:42:49,486 | INFO     | transferring file log.44871837._075393.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6667731382/log.44871837._075393.job.log.tgz.1 to /local/data/boinc/
[2025-06-05 08:43:08] 2025-06-05 06:42:49,486 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6667731382/log.44871837._075393.job.log.tgz.1 /local/data/boinc/slots/0/log.44871837._0753
[2025-06-05 08:43:08] 2025-06-05 06:42:49,505 | INFO     | adding to output.list: log.44871837._075393.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/b7/log.44871837._075393.job.log.tg
[2025-06-05 08:43:08] 2025-06-05 06:42:49,506 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 08:43:08] 2025-06-05 06:42:49,506 | INFO     | summary of transferred files:
[2025-06-05 08:43:08] 2025-06-05 06:42:49,506 | INFO     |  -- lfn=log.44871837._075393.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 08:43:08] 2025-06-05 06:42:49,506 | INFO     | stage-out finished correctly
[2025-06-05 08:43:08] 2025-06-05 06:42:51,786 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 08:43:08] 2025-06-05 06:42:52,130 | INFO     | job 6667731382 has state=finished
[2025-06-05 08:43:08] 2025-06-05 06:42:52,130 | INFO     | preparing for final server update for job 6667731382 in state='finished'
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | this job has now completed (state=finished)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | log transfer has been attempted: DONE
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | job 6667731382 has finished - writing final server update
[2025-06-05 08:43:08] 2025-06-05 06:42:52,724 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,725 | INFO     | executing command: lscpu
[2025-06-05 08:43:08] 2025-06-05 06:42:52,746 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:43:08] 2025-06-05 06:42:52,974 | WARNING  | process 3884161 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 08:43:08] 2025-06-05 06:42:52,974 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667731382/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,975 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667731382/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:43:08] 2025-06-05 06:42:52,975 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2119527 B
[2025-06-05 08:43:08] 2025-06-05 06:42:52,975 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15795 B
[2025-06-05 08:43:08] 2025-06-05 06:42:52,975 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 08:43:08] 2025-06-05 06:42:55,971 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 08:43:08] 2025-06-05 06:42:55,974 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6667731382/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:43:08] 2025-06-05 06:42:55,975 | INFO     | extracted standard info from prmon json
[2025-06-05 08:43:08] 2025-06-05 06:42:55,975 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:43:08] 2025-06-05 06:42:55,975 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:43:08] 2025-06-05 06:42:55,975 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:43:08] 2025-06-05 06:42:55,975 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:43:08] 2025-06-05 06:42:55,976 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:43:08] 2025-06-05 06:42:55,976 | INFO     | sum of square deviations: 170944600.5
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | sum of deviations: -7820721397.5
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | mean x: 1749103133.5
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | mean y: 2516129.4024390243
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | -- intersect: 80024045107.72047
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | intersect: 80024045107.72047
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | chi2: 0.04399952399894363
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | -- intersect: 80024045107.72047
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | current memory leak: -45.75 B/s (using 82 data points, chi2=0.04)
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | ..............................
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | . Timing measurements:
[2025-06-05 08:43:08] 2025-06-05 06:42:55,977 | INFO     | . get job = 0 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . initial setup = 1 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . payload setup = 4 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . stage-in = 0 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . payload execution = 5411 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . stage-out = 0 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | . log creation = 0 s
[2025-06-05 08:43:08] 2025-06-05 06:42:55,978 | INFO     | ..............................
[2025-06-05 08:43:08] 2025-06-05 06:42:56,000 | INFO     | sufficient remaining disk space (224147800064 B)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,019 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,019 | INFO     | 
[2025-06-05 08:43:08] 2025-06-05 06:42:56,019 | INFO     | job summary report
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | --------------------------------------------------
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | PanDA job id: 6667731382
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | task id: 44871837
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | errors: (none)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | pilot state: finished 
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | transexitcode: 0
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | exeerrorcode: 0
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | exeerrordiag: 
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | exitcode: 0
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | exitmsg: OK
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | cpuconsumptiontime: 20451 s
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | nevents: 400
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | neventsw: 0
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | pid: 3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | pgrp: 3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | corecount: 4
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | event service: False
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | sizes: {0: 2396563, 1: 2397422, 4: 2397628, 11: 2397656, 5419: 2424208, 5420: 2433155, 5423: 2433339, 5427: 2433509}
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | --------------------------------------------------
[2025-06-05 08:43:08] 2025-06-05 06:42:56,020 | INFO     | 
[2025-06-05 08:43:08] 2025-06-05 06:42:56,021 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-05 08:43:08] 2025-06-05 06:42:56,024 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6667731382: 2445926 B (within 2537553920 B limit)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,025 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6667731382/HITS.44871837._075393.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,025 | INFO     | total size of present files: 0 B (workdir size: 2445926 B)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,025 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6667731382/HITS.44871837._075393.pool.root.1 since it does not exist
[2025-06-05 08:43:08] 2025-06-05 06:42:56,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | job 6667731382 has completed (purged errors)
[2025-06-05 08:43:08] 2025-06-05 06:42:56,038 | INFO     | overall cleanup function is called
[2025-06-05 08:43:08] 2025-06-05 06:42:56,077 | INFO     | number of running child processes to parent process 3884161: 1
[2025-06-05 08:43:08] 2025-06-05 06:42:56,077 | INFO     | maximum number of monitored processes: 6
[2025-06-05 08:43:08] 2025-06-05 06:42:56,077 | INFO     | aborting job monitoring since job object (job id=6667731382) has expired
[2025-06-05 08:43:08] 2025-06-05 06:42:56,977 | INFO     | PID=3877525 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 08:43:08] 2025-06-05 06:42:57,044 | INFO     | --- collectZombieJob: --- 10, [3884161]
[2025-06-05 08:43:08] 2025-06-05 06:42:57,044 | INFO     | zombie collector waiting for pid 3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:57,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:43:08] 2025-06-05 06:42:57,044 | INFO     | collected zombie processes
[2025-06-05 08:43:08] 2025-06-05 06:42:57,044 | INFO     | will attempt to kill all subprocesses of pid=3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:57,093 | INFO     | process IDs to be killed: [3884161] (in reverse order)
[2025-06-05 08:43:08] 2025-06-05 06:42:57,127 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:43:08] 2025-06-05 06:42:57,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:43:08] 2025-06-05 06:42:57,130 | INFO     | did not find any defunct processes belonging to 3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:57,131 | INFO     | did not find any defunct processes belonging to 3884161
[2025-06-05 08:43:08] 2025-06-05 06:42:57,131 | INFO     | ready for new job
[2025-06-05 08:43:08] 2025-06-05 06:42:57,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:43:08] 2025-06-05 06:42:57,132 | INFO     | **************************************
[2025-06-05 08:43:08] 2025-06-05 06:42:57,132 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:43:08] 2025-06-05 06:42:57,132 | INFO     | **************************************
[2025-06-05 08:43:08] 2025-06-05 06:42:57,132 | INFO     | 
[2025-06-05 08:43:08] 2025-06-05 06:42:57,132 | INFO     | architecture information:
[2025-06-05 08:43:08] 2025-06-05 06:42:57,133 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:43:08] 2025-06-05 06:42:57,146 | INFO     | cat /etc/os-release:
[2025-06-05 08:43:08] NAME="CentOS Linux"
[2025-06-05 08:43:08] VERSION="7 (Core)"
[2025-06-05 08:43:08] ID="centos"
[2025-06-05 08:43:08] ID_LIKE="rhel fedora"
[2025-06-05 08:43:08] VERSION_ID="7"
[2025-06-05 08:43:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:43:08] ANSI_COLOR="0;31"
[2025-06-05 08:43:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:43:08] HOME_URL="https://www.centos.org/"
[2025-06-05 08:43:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:43:08] 
[2025-06-05 08:43:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:43:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:43:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:43:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:43:08] 
[2025-06-05 08:43:08] 2025-06-05 06:42:57,146 | INFO     | **************************************
[2025-06-05 08:43:08] 2025-06-05 06:42:57,649 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | INFO     | sufficient remaining disk space (224150945792 B)
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | INFO     | update_server=False
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:43:08] 2025-06-05 06:42:57,667 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | INFO     | aborting loop
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:43:08] 2025-06-05 06:42:57,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:43:08] 2025-06-05 06:42:57,704 | INFO     | all data control threads have been joined
[2025-06-05 08:43:08] 2025-06-05 06:42:57,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:43:08] 2025-06-05 06:42:58,233 | INFO     | all job control threads have been joined
[2025-06-05 08:43:08] 2025-06-05 06:42:58,330 | INFO     | all payload control threads have been joined
[2025-06-05 08:43:08] 2025-06-05 06:42:58,673 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:58,674 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:58,674 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:58,710 | INFO     | [data] control thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:58,749 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,013 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,239 | INFO     | [job] control thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,336 | INFO     | [payload] control thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,610 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,611 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,673 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,823 | INFO     | [job] validate thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:42:59,967 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:43:00,056 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:43:01,842 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:43:08] 2025-06-05 06:43:02,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329456076608)>', '<ExcThread(monitor, started 140328367539968)>']
[2025-06-05 08:43:08] 2025-06-05 06:43:03,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:43:08] 2025-06-05 06:43:03,700 | INFO     | [monitor] control thread has ended
[2025-06-05 08:43:08] 2025-06-05 06:43:07,933 | INFO     | all workflow threads have been joined
[2025-06-05 08:43:08] 2025-06-05 06:43:07,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:43:08] 2025-06-05 06:43:07,933 | INFO     | traces error code: 0
[2025-06-05 08:43:08] 2025-06-05 06:43:07,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:43:08] 2025-06-05 06:43:08,003 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:43:08] 2025-06-05 06:43:08,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:43:08] 2025-06-05 06:43:08,011 [wrapper] pilotpid: 3877525
[2025-06-05 08:43:08] 2025-06-05 06:43:08,015 [wrapper] Pilot exit status: 0
[2025-06-05 08:43:08] 2025-06-05 06:43:08,026 [wrapper] pandaids: 6667731382
[2025-06-05 08:43:08] 2025-06-05 06:43:08,049 [wrapper] cleanup supervisor_pilot 3896503 3877526
[2025-06-05 08:43:08] 2025-06-05 06:43:08,053 [wrapper] Test setup, not cleaning
[2025-06-05 08:43:08] 2025-06-05 06:43:08,056 [wrapper] apfmon messages muted
[2025-06-05 08:43:08] 2025-06-05 06:43:08,060 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:43:08] 2025-06-05 06:43:08,064 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:43:08]  *** Error codes and diagnostics ***
[2025-06-05 08:43:08]     "exeErrorCode": 0,
[2025-06-05 08:43:08]     "exeErrorDiag": "",
[2025-06-05 08:43:08]     "pilotErrorCode": 0,
[2025-06-05 08:43:08]     "pilotErrorDiag": "",
[2025-06-05 08:43:08]  *** Listing of results directory ***
[2025-06-05 08:43:08] total 423468
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc    495897 May 28 01:30 pilot3.tar.gz
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc      5111 May 28 01:55 queuedata.json
[2025-06-05 08:43:08] -rwx------ 1 boinc boinc     37140 May 28 01:58 runpilot2-wrapper.sh
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc       100 Jun  5 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:43:08] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 07:12 run_atlas
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc       105 Jun  5 07:12 job.xml
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc 226804674 Jun  5 07:12 EVNT.44871834._002954.pool.root.1
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc      6854 Jun  5 07:12 init_data.xml
[2025-06-05 08:43:08] drwxrwx--x 2 boinc boinc      4096 Jun  5 07:12 shared
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc    508882 Jun  5 07:12 input.tar.gz
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:12 start_atlas.sh
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc         0 Jun  5 07:12 boinc_lockfile
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc      2558 Jun  5 07:12 pandaJob.out
[2025-06-05 08:43:08] -rw------- 1 boinc boinc    987109 Jun  5 07:12 agis_schedconf.cvmfs.json
[2025-06-05 08:43:08] -rw------- 1 boinc boinc   1598969 Jun  5 07:12 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:43:08] drwx------ 4 boinc boinc      4096 Jun  5 07:12 pilot3
[2025-06-05 08:43:08] -rw------- 1 boinc boinc 201451721 Jun  5 08:42 HITS.44871837._075393.pool.root.1
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc       529 Jun  5 08:42 boinc_task_state.xml
[2025-06-05 08:43:08] -rw------- 1 boinc boinc        95 Jun  5 08:42 pilot_heartbeat.json
[2025-06-05 08:43:08] -rw------- 1 boinc boinc      1019 Jun  5 08:42 memory_monitor_summary.json
[2025-06-05 08:43:08] -rw------- 1 boinc boinc    242504 Jun  5 08:42 log.44871837._075393.job.log.tgz.1
[2025-06-05 08:43:08] -rw------- 1 boinc boinc      7661 Jun  5 08:42 heartbeat.json
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc        27 Jun  5 08:43 wrapper_checkpoint.txt
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc      8192 Jun  5 08:43 boinc_mmap_file
[2025-06-05 08:43:08] -rw------- 1 boinc boinc      4480 Jun  5 08:43 pilotlog.txt
[2025-06-05 08:43:08] -rw------- 1 boinc boinc    524669 Jun  5 08:43 log.44871837._075393.job.log.1
[2025-06-05 08:43:08] -rw------- 1 boinc boinc       357 Jun  5 08:43 output.list
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc       620 Jun  5 08:43 runtime_log
[2025-06-05 08:43:08] -rw------- 1 boinc boinc    788480 Jun  5 08:43 result.tar.gz
[2025-06-05 08:43:08] -rw------- 1 boinc boinc       659 Jun  5 08:43 ymSLDmbMJe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBbSKDmhn8uym.diag
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc      8738 Jun  5 08:43 runtime_log.err
[2025-06-05 08:43:08] -rw-r--r-- 1 boinc boinc     22448 Jun  5 08:43 stderr.txt
[2025-06-05 08:43:08] HITS file was successfully produced:
[2025-06-05 08:43:08] -rw------- 1 boinc boinc 201451721 Jun  5 08:42 shared/HITS.pool.root.1
[2025-06-05 08:43:08]  *** Contents of shared directory: ***
[2025-06-05 08:43:08] total 419520
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc 226804674 Jun  5 07:12 ATLAS.root_0
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc    508882 Jun  5 07:12 input.tar.gz
[2025-06-05 08:43:08] -rw-r--r-- 2 boinc boinc     15093 Jun  5 07:12 start_atlas.sh
[2025-06-05 08:43:08] -rw------- 1 boinc boinc 201451721 Jun  5 08:42 HITS.pool.root.1
[2025-06-05 08:43:08] -rw------- 1 boinc boinc    788480 Jun  5 08:43 result.tar.gz
08:43:09 (3873833): run_atlas exited; CPU time 20470.762594
08:43:09 (3873833): called boinc_finish(0)

</stderr_txt>
]]>

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