Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:12 (5802): wrapper (7.7.26015): starting
06:06:12 (5802): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:06:12] Arguments: --nthreads 8
[2025-06-05 06:06:12] Threads: 8
[2025-06-05 06:06:12] Checking for CVMFS
[2025-06-05 06:06:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:06:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:06:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:06:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:06:15] 2.11.2.0 16765 34161 98432 146804 3 405 16771563 25165825 3083 130560 0 16638252 99.781 20227079 2106 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:06:15] CVMFS is ok
[2025-06-05 06:06:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:06:15] Checking for apptainer binary...
[2025-06-05 06:06:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:06:15] Running /usr/bin/apptainer --version
[2025-06-05 06:06:15] apptainer version 1.3.2-1.el7
[2025-06-05 06:06:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:06:18] cg-vwn404.simple-grid.lan
[2025-06-05 06:06:18] apptainer works
[2025-06-05 06:06:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 06:06:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 06:06:18] Starting ATLAS job with PandaID=6667883851
[2025-06-05 06:06:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:44:31]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:44:31] 2025-06-05 09:24:25,183 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:44:31] 2025-06-05 09:24:25,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:44:31] 2025-06-05 09:24:25,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:44:31] 2025-06-05 09:24:25,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:44:31] 2025-06-05 09:24:25,191 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:44:31] 2025-06-05 09:24:25,192 | INFO     | sum of square deviations: 8372156975.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,195 | INFO     | sum of deviations: 92445640208.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,196 | INFO     | mean x: 1749106182.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,196 | INFO     | mean y: 2464991.776666667
[2025-06-05 11:44:31] 2025-06-05 09:24:25,196 | INFO     | -- intersect: -19311224576.718067
[2025-06-05 11:44:31] 2025-06-05 09:24:25,196 | INFO     | intersect: -19311224576.718067
[2025-06-05 11:44:31] 2025-06-05 09:24:25,197 | INFO     | chi2: 8.37451507636648
[2025-06-05 11:44:31] 2025-06-05 09:24:25,198 | INFO     | sum of square deviations: 7960484140.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,200 | INFO     | sum of deviations: 111871916301.00002
[2025-06-05 11:44:31] 2025-06-05 09:24:25,201 | INFO     | mean x: 1749106030.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,201 | INFO     | mean y: 2472083.3762711864
[2025-06-05 11:44:31] 2025-06-05 09:24:25,201 | INFO     | -- intersect: -24578425252.565712
[2025-06-05 11:44:31] 2025-06-05 09:24:25,201 | INFO     | intersect: -24578425252.565712
[2025-06-05 11:44:31] 2025-06-05 09:24:25,201 | INFO     | chi2: 7.593801653174446
[2025-06-05 11:44:31] 2025-06-05 09:24:25,202 | INFO     | current chi2=7.593801653174446 (change=9.322491106324074 %)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,202 | INFO     | right removable region: 294
[2025-06-05 11:44:31] 2025-06-05 09:24:25,205 | INFO     | sum of square deviations: 7960484140.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,208 | INFO     | sum of deviations: -15309199341.000015
[2025-06-05 11:44:31] 2025-06-05 09:24:25,209 | INFO     | mean x: 1749106335.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,209 | INFO     | mean y: 2504892.73220339
[2025-06-05 11:44:31] 2025-06-05 09:24:25,209 | INFO     | -- intersect: 3366297481.2469206
[2025-06-05 11:44:31] 2025-06-05 09:24:25,209 | INFO     | intersect: 3366297481.2469206
[2025-06-05 11:44:31] 2025-06-05 09:24:25,210 | INFO     | chi2: 3.262445467434693
[2025-06-05 11:44:31] 2025-06-05 09:24:25,210 | INFO     | current chi2=3.262445467434693 (change=61.04317160235865 %)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,210 | INFO     | sum of square deviations: 7562532492.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,213 | INFO     | sum of deviations: -81675194118.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,213 | INFO     | mean x: 1749106487.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,213 | INFO     | mean y: 2530246.1137931035
[2025-06-05 11:44:31] 2025-06-05 09:24:25,213 | INFO     | -- intersect: 18892844045.38243
[2025-06-05 11:44:31] 2025-06-05 09:24:25,213 | INFO     | intersect: 18892844045.38243
[2025-06-05 11:44:31] 2025-06-05 09:24:25,214 | INFO     | chi2: 1.2001002716776916
[2025-06-05 11:44:31] 2025-06-05 09:24:25,214 | INFO     | current chi2=1.2001002716776916 (change=63.21470247834219 %)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,214 | INFO     | sum of square deviations: 7178069470.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,217 | INFO     | sum of deviations: -90043673555.99997
[2025-06-05 11:44:31] 2025-06-05 09:24:25,217 | INFO     | mean x: 1749106640.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,218 | INFO     | mean y: 2533549.094736842
[2025-06-05 11:44:31] 2025-06-05 09:24:25,218 | INFO     | -- intersect: 21943807308.707985
[2025-06-05 11:44:31] 2025-06-05 09:24:25,218 | INFO     | intersect: 21943807308.707985
[2025-06-05 11:44:31] 2025-06-05 09:24:25,218 | INFO     | chi2: 1.1339110395450707
[2025-06-05 11:44:31] 2025-06-05 09:24:25,218 | INFO     | current chi2=1.1339110395450707 (change=5.51530848668929 %)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,219 | INFO     | left removable region: 30
[2025-06-05 11:44:31] 2025-06-05 09:24:25,219 | INFO     | sum of square deviations: 5705372090.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,221 | INFO     | sum of deviations: -42064104951.0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,222 | INFO     | mean x: 1749106914.5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,222 | INFO     | mean y: 2530593.8181818184
[2025-06-05 11:44:31] 2025-06-05 09:24:25,225 | INFO     | -- intersect: 12898204295.977682
[2025-06-05 11:44:31] 2025-06-05 09:24:25,225 | INFO     | intersect: 12898204295.977682
[2025-06-05 11:44:31] 2025-06-05 09:24:25,226 | INFO     | chi2: 0.22184147053659256
[2025-06-05 11:44:31] 2025-06-05 09:24:25,226 | INFO     | -- intersect: 12898204295.977682
[2025-06-05 11:44:31] 2025-06-05 09:24:25,226 | INFO     | current memory leak: -7.37 B/s (using 264 data points, chi2=0.22)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | ..............................
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . Timing measurements:
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . get job = 0 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . initial setup = 9 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . payload setup = 156 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . stage-in = 0 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,227 | INFO     | . payload execution = 18451 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,228 | INFO     | . stage-out = 4 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,228 | INFO     | . log creation = 1 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,228 | INFO     | ..............................
[2025-06-05 11:44:31] 2025-06-05 09:24:25,509 | INFO     | 
[2025-06-05 11:44:31] 2025-06-05 09:24:25,509 | INFO     | job summary report
[2025-06-05 11:44:31] 2025-06-05 09:24:25,509 | INFO     | --------------------------------------------------
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | PanDA job id: 6667883851
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | task id: 44871837
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | errors: (none)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | pilot state: finished 
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | transexitcode: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | exeerrorcode: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | exeerrordiag: 
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | exitcode: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | exitmsg: OK
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | cpuconsumptiontime: 69169 s
[2025-06-05 11:44:31] 2025-06-05 09:24:25,510 | INFO     | nevents: 400
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | neventsw: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | pid: 20494
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | pgrp: 20494
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | corecount: 8
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | event service: False
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | sizes: {0: 2396564, 1: 2397420, 12: 2397420, 23: 2397448, 34: 2397476, 44: 2397504, 55: 2397660, 66: 2397688, 77: 2397716, 81: 2397978, 87: 2398006, 18612: 2429981
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | --------------------------------------------------
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | 
[2025-06-05 11:44:31] 2025-06-05 09:24:25,511 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:44:31] 2025-06-05 09:24:25,842 | INFO     | job 6667883851 has completed (purged errors)
[2025-06-05 11:44:31] 2025-06-05 09:24:25,842 | INFO     | overall cleanup function is called
[2025-06-05 11:44:31] 2025-06-05 09:24:26,851 | INFO     | --- collectZombieJob: --- 10, [20494]
[2025-06-05 11:44:31] 2025-06-05 09:24:26,851 | INFO     | zombie collector waiting for pid 20494
[2025-06-05 11:44:31] 2025-06-05 09:24:26,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:44:31] 2025-06-05 09:24:26,852 | INFO     | collected zombie processes
[2025-06-05 11:44:31] 2025-06-05 09:24:26,852 | INFO     | will attempt to kill all subprocesses of pid=20494
[2025-06-05 11:44:31] 2025-06-05 09:24:26,964 | INFO     | process IDs to be killed: [20494] (in reverse order)
[2025-06-05 11:44:31] 2025-06-05 09:24:27,499 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:44:31] 2025-06-05 09:24:27,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:44:31] 2025-06-05 09:24:27,503 | INFO     | did not find any defunct processes belonging to 20494
[2025-06-05 11:44:31] 2025-06-05 09:24:27,508 | INFO     | did not find any defunct processes belonging to 20494
[2025-06-05 11:44:31] 2025-06-05 09:24:27,508 | INFO     | ready for new job
[2025-06-05 11:44:31] 2025-06-05 09:24:27,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:44:31] 2025-06-05 09:24:27,511 | INFO     | **************************************
[2025-06-05 11:44:31] 2025-06-05 09:24:27,513 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:44:31] 2025-06-05 09:24:27,513 | INFO     | **************************************
[2025-06-05 11:44:31] 2025-06-05 09:24:27,513 | INFO     | 
[2025-06-05 11:44:31] 2025-06-05 09:24:27,514 | INFO     | pilot is running in a VM
[2025-06-05 11:44:31] 2025-06-05 09:24:27,514 | INFO     | architecture information:
[2025-06-05 11:44:31] 2025-06-05 09:24:27,523 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:44:31] 2025-06-05 09:24:27,639 | INFO     | cat /etc/os-release:
[2025-06-05 11:44:31] NAME="CentOS Linux"
[2025-06-05 11:44:31] VERSION="7 (Core)"
[2025-06-05 11:44:31] ID="centos"
[2025-06-05 11:44:31] ID_LIKE="rhel fedora"
[2025-06-05 11:44:31] VERSION_ID="7"
[2025-06-05 11:44:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:44:31] ANSI_COLOR="0;31"
[2025-06-05 11:44:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:44:31] HOME_URL="https://www.centos.org/"
[2025-06-05 11:44:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:44:31] 
[2025-06-05 11:44:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:44:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:44:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:44:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:44:31] 
[2025-06-05 11:44:31] 2025-06-05 09:24:27,640 | INFO     | **************************************
[2025-06-05 11:44:31] 2025-06-05 09:24:28,143 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 11:44:31] 2025-06-05 09:24:28,255 | INFO     | sufficient remaining disk space (496876126208 B)
[2025-06-05 11:44:31] 2025-06-05 09:24:28,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:44:31] 2025-06-05 09:24:28,256 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:44:31] 2025-06-05 09:24:28,256 | INFO     | update_server=False
[2025-06-05 11:44:31] 2025-06-05 09:24:28,256 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:44:31] 2025-06-05 09:24:28,256 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:44:31] 2025-06-05 09:24:28,256 | INFO     | aborting loop
[2025-06-05 11:44:31] 2025-06-05 09:24:28,257 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:44:31] 2025-06-05 09:24:28,257 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:44:31] 2025-06-05 09:24:28,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:44:31] 2025-06-05 09:24:28,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:44:31] 2025-06-05 09:24:28,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:44:31] 2025-06-05 09:24:28,294 | INFO     | all payload control threads have been joined
[2025-06-05 11:44:31] 2025-06-05 09:24:28,384 | INFO     | all data control threads have been joined
[2025-06-05 11:44:31] 2025-06-05 09:24:28,806 | INFO     | all job control threads have been joined
[2025-06-05 11:44:31] 2025-06-05 09:24:29,028 [wrapper] supervise_pilot (15 min periods counter: 22)
[2025-06-05 11:44:31] 2025-06-05 09:24:29,262 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,263 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,300 | INFO     | [payload] control thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,390 | INFO     | [data] control thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,593 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,602 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:29,812 | INFO     | [job] control thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,001 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,045 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,147 | INFO     | [job] validate thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:44:31] 2025-06-05 09:24:30,265 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:44:31] 2025-06-05 09:24:30,512 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:30,557 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:31,412 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:34,260 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:44:31] 2025-06-05 09:24:34,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690285377344)>', '<ExcThread(monitor, started 139689709266688)>']
[2025-06-05 11:44:31] 2025-06-05 09:24:35,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:44:31] 2025-06-05 09:24:35,299 | INFO     | [monitor] control thread has ended
[2025-06-05 11:44:31] 2025-06-05 09:24:39,716 | INFO     | all workflow threads have been joined
[2025-06-05 11:44:31] 2025-06-05 09:24:39,716 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:44:31] 2025-06-05 09:24:39,717 | INFO     | traces error code: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:39,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:44:31] 2025-06-05 09:24:40,109 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:44:31] 2025-06-05 09:24:40,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:44:31] 2025-06-05 09:24:40,299 [wrapper] pilotpid: 9834
[2025-06-05 11:44:31] 2025-06-05 09:24:40,394 [wrapper] Pilot exit status: 0
[2025-06-05 11:44:31] 2025-06-05 09:24:40,834 [wrapper] pandaids: 6667883851
[2025-06-05 11:44:31] 2025-06-05 09:24:41,916 [wrapper] cleanup supervisor_pilot 25825 9835
[2025-06-05 11:44:31] 2025-06-05 09:24:41,957 [wrapper] Test setup, not cleaning
[2025-06-05 11:44:31] 2025-06-05 09:24:42,024 [wrapper] apfmon messages muted
[2025-06-05 11:44:31] 2025-06-05 09:24:42,106 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:44:31] 2025-06-05 09:24:42,197 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:44:31]  *** Error codes and diagnostics ***
[2025-06-05 11:44:31]     "exeErrorCode": 0,
[2025-06-05 11:44:31]     "exeErrorDiag": "",
[2025-06-05 11:44:31]     "pilotErrorCode": 0,
[2025-06-05 11:44:31]     "pilotErrorDiag": "",
[2025-06-05 11:44:31]  *** Listing of results directory ***
[2025-06-05 11:44:31] total 421036
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc    495897 May 28 03:31 pilot3.tar.gz
[2025-06-05 11:44:31] -rwx------. 1 boinc boinc     37140 May 28 03:41 runpilot2-wrapper.sh
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc      5111 May 28 03:41 queuedata.json
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:44:31] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:06 run_atlas
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:06 job.xml
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc      6392 Jun  5 06:06 init_data.xml
[2025-06-05 11:44:31] -rw-r--r--. 2 boinc boinc 223155858 Jun  5 06:06 EVNT.44871834._003005.pool.root.1
[2025-06-05 11:44:31] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:06 start_atlas.sh
[2025-06-05 11:44:31] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:06 shared
[2025-06-05 11:44:31] -rw-r--r--. 2 boinc boinc    508871 Jun  5 06:06 input.tar.gz
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:06 boinc_lockfile
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc      2559 Jun  5 06:06 pandaJob.out
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc    987109 Jun  5 06:09 agis_schedconf.cvmfs.json
[2025-06-05 11:44:31] drwx------. 4 boinc boinc      4096 Jun  5 06:09 pilot3
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc 200129282 Jun  5 11:21 HITS.44871837._076812.pool.root.1
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc       531 Jun  5 11:21 boinc_task_state.xml
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc      1012 Jun  5 11:22 memory_monitor_summary.json
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc   1598969 Jun  5 11:22 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc    417189 Jun  5 11:22 log.44871837._076812.job.log.tgz.1
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc        95 Jun  5 11:23 pilot_heartbeat.json
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc      7688 Jun  5 11:24 heartbeat.json
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc      4539 Jun  5 11:24 pilotlog.txt
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc   1600061 Jun  5 11:24 log.44871837._076812.job.log.1
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc       357 Jun  5 11:24 output.list
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc       620 Jun  5 11:24 runtime_log
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc   2037760 Jun  5 11:24 result.tar.gz
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc      8659 Jun  5 11:24 runtime_log.err
[2025-06-05 11:44:31] -rw-------. 1 boinc boinc       657 Jun  5 11:24 9NMNDmVyKe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmewaKDmV3vyRn.diag
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc      8192 Jun  5 11:44 boinc_mmap_file
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc        28 Jun  5 11:44 wrapper_checkpoint.txt
[2025-06-05 11:44:31] -rw-r--r--. 1 boinc boinc     20507 Jun  5 11:44 stderr.txt
[2025-06-05 11:44:32] HITS file was successfully produced:
[2025-06-05 11:44:32] -rw-------. 1 boinc boinc 200129282 Jun  5 11:21 shared/HITS.pool.root.1
[2025-06-05 11:44:32]  *** Contents of shared directory: ***
[2025-06-05 11:44:32] total 415876
[2025-06-05 11:44:32] -rw-r--r--. 2 boinc boinc 223155858 Jun  5 06:06 ATLAS.root_0
[2025-06-05 11:44:32] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:06 start_atlas.sh
[2025-06-05 11:44:32] -rw-r--r--. 2 boinc boinc    508871 Jun  5 06:06 input.tar.gz
[2025-06-05 11:44:32] -rw-------. 1 boinc boinc 200129282 Jun  5 11:21 HITS.pool.root.1
[2025-06-05 11:44:32] -rw-------. 1 boinc boinc   2037760 Jun  5 11:24 result.tar.gz
11:44:33 (5802): run_atlas exited; CPU time 69425.669627
11:44:33 (5802): called boinc_finish(0)

</stderr_txt>
]]>

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