Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:12:50 (2425437): wrapper (7.7.26015): starting
21:12:50 (2425437): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 21:12:50] Arguments: --nthreads 12
[2025-06-04 21:12:50] Threads: 12
[2025-06-04 21:12:50] Checking for CVMFS
[2025-06-04 21:12:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 21:12:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 21:12:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 21:12:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 21:12:51] 2.12.6.0 5559 2100 147332 146799 2 25 36975410 40960001 6404 16776704 0 10982046 99.882 2842788 35872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 21:12:51] CVMFS is ok
[2025-06-04 21:12:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 21:12:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 21:12:51] Further information can be found at the LHC@home message board.
[2025-06-04 21:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 21:12:51] Checking for apptainer binary...
[2025-06-04 21:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 21:12:51] Running /usr/bin/apptainer --version
[2025-06-04 21:12:51] apptainer version 1.4.1-1.el9
[2025-06-04 21:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 21:12:51] c6-8-12-3.aglt2.org
[2025-06-04 21:12:51] apptainer works
[2025-06-04 21:12:51] Set ATHENA_PROC_NUMBER=12
[2025-06-04 21:12:51] Set ATHENA_CORE_NUMBER=12
[2025-06-04 21:12:51] Starting ATLAS job with PandaID=6667435378
[2025-06-04 21:12:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:10:18]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:10:18]  is_altstaged=None
[2025-06-04 22:10:18]  is_tar=False
[2025-06-04 22:10:18]  lfn=log.44871837._072335.job.log.tgz.1
[2025-06-04 22:10:18]  mtime=0
[2025-06-04 22:10:18]  protocol_id=None
[2025-06-04 22:10:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 22:10:18]  replicas=None
[2025-06-04 22:10:18]  scope=mc23_13p6TeV
[2025-06-04 22:10:18]  status=None
[2025-06-04 22:10:18]  status_code=0
[2025-06-04 22:10:18]  storage_token=
[2025-06-04 22:10:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667435378/log.44871837._072335.job.log.tgz.1
[2025-06-04 22:10:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/13/log.44871837._072335.job.log.tgz.1
[2025-06-04 22:10:18]  workdir=None
[2025-06-04 22:10:18] ]
[2025-06-04 22:10:18] 2025-06-05 02:09:58,877 | INFO     | transferring file log.44871837._072335.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667435378/log.44871837._072335.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 22:10:18] 2025-06-05 02:09:58,877 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667435378/log.44871837._072335.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._072335.job
[2025-06-04 22:10:18] 2025-06-05 02:09:58,898 | INFO     | adding to output.list: log.44871837._072335.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/13/log.44871837._072335.job.log.tg
[2025-06-04 22:10:18] 2025-06-05 02:09:58,899 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 22:10:18] 2025-06-05 02:09:58,900 | INFO     | summary of transferred files:
[2025-06-04 22:10:18] 2025-06-05 02:09:58,900 | INFO     |  -- lfn=log.44871837._072335.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 22:10:18] 2025-06-05 02:09:58,900 | INFO     | stage-out finished correctly
[2025-06-04 22:10:18] 2025-06-05 02:09:59,337 | INFO     | PID=2429069 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 22:10:18] 2025-06-05 02:09:59,338 | INFO     | .. there are 8 such processes running
[2025-06-04 22:10:18] 2025-06-05 02:09:59,386 | WARNING  | process 2435583 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 22:10:18] 2025-06-05 02:09:59,386 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667435378/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:10:18] 2025-06-05 02:09:59,521 | INFO     | number of running child processes to parent process 2435583: 1
[2025-06-04 22:10:18] 2025-06-05 02:09:59,521 | INFO     | maximum number of monitored processes: 6
[2025-06-04 22:10:18] 2025-06-05 02:10:01,057 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 22:10:18] 2025-06-05 02:10:01,143 | INFO     | job 6667435378 has state=finished
[2025-06-04 22:10:18] 2025-06-05 02:10:01,143 | INFO     | preparing for final server update for job 6667435378 in state='finished'
[2025-06-04 22:10:18] 2025-06-05 02:10:01,143 | INFO     | this job has now completed (state=finished)
[2025-06-04 22:10:18] 2025-06-05 02:10:01,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 22:10:18] 2025-06-05 02:10:01,144 | INFO     | log transfer has been attempted: DONE
[2025-06-04 22:10:18] 2025-06-05 02:10:01,144 | INFO     | job 6667435378 has finished - writing final server update
[2025-06-04 22:10:18] 2025-06-05 02:10:01,144 | INFO     | total number of processed events: 400 (read)
[2025-06-04 22:10:18] 2025-06-05 02:10:01,159 | INFO     | executing command: lscpu
[2025-06-04 22:10:18] 2025-06-05 02:10:01,242 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 22:10:18] 2025-06-05 02:10:02,025 | INFO     | monitor loop #258: job 0:6667435378 is in state 'finished'
[2025-06-04 22:10:18] 2025-06-05 02:10:02,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,332 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 22:10:18] 2025-06-05 02:10:04,333 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667435378/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,334 | INFO     | extracted standard info from prmon json
[2025-06-04 22:10:18] 2025-06-05 02:10:04,334 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:10:18] 2025-06-05 02:10:04,334 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:10:18] 2025-06-05 02:10:04,335 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:10:18] 2025-06-05 02:10:04,335 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:10:18] 2025-06-05 02:10:04,338 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:10:18] 2025-06-05 02:10:04,339 | INFO     | sum of square deviations: 36465800.0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,339 | INFO     | sum of deviations: 513816968.99999994
[2025-06-04 22:10:18] 2025-06-05 02:10:04,339 | INFO     | mean x: 1749087774.0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,339 | INFO     | mean y: 2545831.5714285714
[2025-06-04 22:10:18] 2025-06-05 02:10:04,340 | INFO     | -- intersect: -24642765077.59927
[2025-06-04 22:10:18] 2025-06-05 02:10:04,340 | INFO     | intersect: -24642765077.59927
[2025-06-04 22:10:18] 2025-06-05 02:10:04,340 | INFO     | chi2: 0.003971789767198023
[2025-06-04 22:10:18] 2025-06-05 02:10:04,340 | INFO     | -- intersect: -24642765077.59927
[2025-06-04 22:10:18] 2025-06-05 02:10:04,340 | INFO     | current memory leak: 14.09 B/s (using 49 data points, chi2=0.00)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,341 | INFO     | ..............................
[2025-06-04 22:10:18] 2025-06-05 02:10:04,341 | INFO     | . Timing measurements:
[2025-06-04 22:10:18] 2025-06-05 02:10:04,341 | INFO     | . get job = 0 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . initial setup = 2 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . payload setup = 5 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . stage-in = 0 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . payload execution = 3392 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . stage-out = 0 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | . log creation = 0 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,342 | INFO     | ..............................
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | 
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | job summary report
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | --------------------------------------------------
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | PanDA job id: 6667435378
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | task id: 44871837
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | errors: (none)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:10:18] 2025-06-05 02:10:04,393 | INFO     | pilot state: finished 
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | transexitcode: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | exeerrorcode: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | exeerrordiag: 
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | exitcode: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | exitmsg: OK
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | cpuconsumptiontime: 37203 s
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | nevents: 400
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | neventsw: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | pid: 2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | pgrp: 2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | corecount: 12
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | event service: False
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | sizes: {0: 2397389, 4: 2397595, 11: 2397623, 3401: 2423227, 3403: 2432168, 3405: 2432224, 3408: 2432522}
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | --------------------------------------------------
[2025-06-04 22:10:18] 2025-06-05 02:10:04,394 | INFO     | 
[2025-06-04 22:10:18] 2025-06-05 02:10:04,395 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 22:10:18] 2025-06-05 02:10:04,411 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,411 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | job 6667435378 has completed (purged errors)
[2025-06-04 22:10:18] 2025-06-05 02:10:04,413 | INFO     | overall cleanup function is called
[2025-06-04 22:10:18] 2025-06-05 02:10:05,420 | INFO     | --- collectZombieJob: --- 10, [2435583]
[2025-06-04 22:10:18] 2025-06-05 02:10:05,421 | INFO     | zombie collector waiting for pid 2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:05,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:10:18] 2025-06-05 02:10:05,421 | INFO     | collected zombie processes
[2025-06-04 22:10:18] 2025-06-05 02:10:05,421 | INFO     | will attempt to kill all subprocesses of pid=2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:05,575 | INFO     | process IDs to be killed: [2435583] (in reverse order)
[2025-06-04 22:10:18] 2025-06-05 02:10:05,628 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:10:18] 2025-06-05 02:10:05,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:10:18] 2025-06-05 02:10:05,635 | INFO     | did not find any defunct processes belonging to 2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:05,641 | INFO     | did not find any defunct processes belonging to 2435583
[2025-06-04 22:10:18] 2025-06-05 02:10:05,641 | INFO     | ready for new job
[2025-06-04 22:10:18] 2025-06-05 02:10:05,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:10:18] 2025-06-05 02:10:05,643 | INFO     | **************************************
[2025-06-04 22:10:18] 2025-06-05 02:10:05,643 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:10:18] 2025-06-05 02:10:05,643 | INFO     | **************************************
[2025-06-04 22:10:18] 2025-06-05 02:10:05,643 | INFO     | 
[2025-06-04 22:10:18] 2025-06-05 02:10:05,657 | INFO     | architecture information:
[2025-06-04 22:10:18] 2025-06-05 02:10:05,657 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:10:18] 2025-06-05 02:10:05,671 | INFO     | cat /etc/os-release:
[2025-06-04 22:10:18] NAME="CentOS Linux"
[2025-06-04 22:10:18] VERSION="7 (Core)"
[2025-06-04 22:10:18] ID="centos"
[2025-06-04 22:10:18] ID_LIKE="rhel fedora"
[2025-06-04 22:10:18] VERSION_ID="7"
[2025-06-04 22:10:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:10:18] ANSI_COLOR="0;31"
[2025-06-04 22:10:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:10:18] HOME_URL="https://www.centos.org/"
[2025-06-04 22:10:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:10:18] 
[2025-06-04 22:10:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:10:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:10:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:10:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:10:18] 
[2025-06-04 22:10:18] 2025-06-05 02:10:05,671 | INFO     | **************************************
[2025-06-04 22:10:18] 2025-06-05 02:10:06,175 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 22:10:18] 2025-06-05 02:10:06,193 | INFO     | sufficient remaining disk space (56489934848 B)
[2025-06-04 22:10:18] 2025-06-05 02:10:06,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:10:18] 2025-06-05 02:10:06,194 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:10:18] 2025-06-05 02:10:06,194 | INFO     | update_server=False
[2025-06-04 22:10:18] 2025-06-05 02:10:06,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:10:18] 2025-06-05 02:10:06,194 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 22:10:18] 2025-06-05 02:10:06,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:10:18] 2025-06-05 02:10:06,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:10:18] 2025-06-05 02:10:06,195 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:10:18] 2025-06-05 02:10:06,195 | INFO     | aborting loop
[2025-06-04 22:10:18] 2025-06-05 02:10:06,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:10:18] 2025-06-05 02:10:06,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:10:18] 2025-06-05 02:10:06,214 | INFO     | all data control threads have been joined
[2025-06-04 22:10:18] 2025-06-05 02:10:06,291 | INFO     | all job control threads have been joined
[2025-06-04 22:10:18] 2025-06-05 02:10:06,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:10:18] 2025-06-05 02:10:07,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:10:18] 2025-06-05 02:10:07,199 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,199 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,200 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,219 | INFO     | [data] control thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,223 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,297 | INFO     | [job] control thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,444 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,495 | INFO     | all payload control threads have been joined
[2025-06-04 22:10:18] 2025-06-05 02:10:07,544 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:07,752 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,024 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,153 | INFO     | [job] validate thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,411 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,501 | INFO     | [payload] control thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,582 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:08,998 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:11,149 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:10:18] 2025-06-05 02:10:12,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705799595840)>', '<ExcThread(monitor, started 139705446278912)>']
[2025-06-04 22:10:18] 2025-06-05 02:10:13,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:10:18] 2025-06-05 02:10:13,231 | INFO     | [monitor] control thread has ended
[2025-06-04 22:10:18] 2025-06-05 02:10:17,953 | INFO     | all workflow threads have been joined
[2025-06-04 22:10:18] 2025-06-05 02:10:17,953 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:10:18] 2025-06-05 02:10:17,953 | INFO     | traces error code: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:17,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:10:18] 2025-06-05 02:10:18,111 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:10:18] 2025-06-05 02:10:18,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:10:18] 2025-06-05 02:10:18,118 [wrapper] pilotpid: 2429069
[2025-06-04 22:10:18] 2025-06-05 02:10:18,120 [wrapper] Pilot exit status: 0
[2025-06-04 22:10:18] 2025-06-05 02:10:18,131 [wrapper] pandaids: 6667435378
[2025-06-04 22:10:18] 2025-06-05 02:10:18,176 [wrapper] cleanup supervisor_pilot 2504439 2429070
[2025-06-04 22:10:18] 2025-06-05 02:10:18,178 [wrapper] Test setup, not cleaning
[2025-06-04 22:10:18] 2025-06-05 02:10:18,181 [wrapper] apfmon messages muted
[2025-06-04 22:10:18] 2025-06-05 02:10:18,184 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:10:18] 2025-06-05 02:10:18,186 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:10:18]  *** Error codes and diagnostics ***
[2025-06-04 22:10:18]     "exeErrorCode": 0,
[2025-06-04 22:10:18]     "exeErrorDiag": "",
[2025-06-04 22:10:18]     "pilotErrorCode": 0,
[2025-06-04 22:10:18]     "pilotErrorDiag": "",
[2025-06-04 22:10:18]  *** Listing of results directory ***
[2025-06-04 22:10:18] total 417220
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas    495897 May 27 14:37 pilot3.tar.gz
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas      5111 May 27 15:25 queuedata.json
[2025-06-04 22:10:18] -rwx------. 1 boincer umatlas     37140 May 27 15:28 runpilot2-wrapper.sh
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas       100 Jun  4 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:10:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 21:12 run_atlas
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas       105 Jun  4 21:12 job.xml
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas 221262580 Jun  4 21:12 EVNT.44871834._002840.pool.root.1
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 21:12 start_atlas.sh
[2025-06-04 22:10:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 21:12 shared
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 21:12 input.tar.gz
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas         0 Jun  4 21:12 boinc_lockfile
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas      2557 Jun  4 21:12 pandaJob.out
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas    987117 Jun  4 21:12 agis_schedconf.cvmfs.json
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas   1598969 Jun  4 21:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:10:18] drwx------. 4 boincer umatlas      4096 Jun  4 21:13 pilot3
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas 200745593 Jun  4 22:09 HITS.44871837._072335.pool.root.1
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas       529 Jun  4 22:09 boinc_task_state.xml
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas        95 Jun  4 22:09 pilot_heartbeat.json
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas      1029 Jun  4 22:09 memory_monitor_summary.json
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas    342869 Jun  4 22:09 log.44871837._072335.job.log.tgz.1
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas      7710 Jun  4 22:10 heartbeat.json
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas      6839 Jun  4 22:10 init_data.xml
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas        27 Jun  4 22:10 wrapper_checkpoint.txt
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 22:10 boinc_mmap_file
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas      4476 Jun  4 22:10 pilotlog.txt
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas    352274 Jun  4 22:10 log.44871837._072335.job.log.1
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas       357 Jun  4 22:10 output.list
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas       620 Jun  4 22:10 runtime_log
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas    716800 Jun  4 22:10 result.tar.gz
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 22:10 runtime_log.err
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas       653 Jun  4 22:10 ehfKDmU9Ee7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNISKDmzHB9Rm.diag
[2025-06-04 22:10:18] -rw-r--r--. 1 boincer umatlas     21524 Jun  4 22:10 stderr.txt
[2025-06-04 22:10:18] HITS file was successfully produced:
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas 200745593 Jun  4 22:09 shared/HITS.pool.root.1
[2025-06-04 22:10:18]  *** Contents of shared directory: ***
[2025-06-04 22:10:18] total 413344
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas 221262580 Jun  4 21:12 ATLAS.root_0
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 21:12 start_atlas.sh
[2025-06-04 22:10:18] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 21:12 input.tar.gz
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas 200745593 Jun  4 22:09 HITS.pool.root.1
[2025-06-04 22:10:18] -rw-------. 1 boincer umatlas    716800 Jun  4 22:10 result.tar.gz
22:10:20 (2425437): run_atlas exited; CPU time 37257.765969
22:10:20 (2425437): called boinc_finish(0)

</stderr_txt>
]]>

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