Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:11:41 (241506): wrapper (7.7.26015): starting
21:11:41 (241506): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 21:11:41] Arguments: --nthreads 10
[2025-06-04 21:11:41] Threads: 10
[2025-06-04 21:11:41] Checking for CVMFS
[2025-06-04 21:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 21:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 21:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 21:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 21:11:42] 2.12.6.0 6643 2100 191188 146799 2 185 32351293 32935936 34854 16776704 0 14739381 99.686 9669051 22600 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 21:11:42] CVMFS is ok
[2025-06-04 21:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 21:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 21:11:42] Further information can be found at the LHC@home message board.
[2025-06-04 21:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 21:11:42] Checking for apptainer binary...
[2025-06-04 21:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 21:11:42] Running /usr/bin/apptainer --version
[2025-06-04 21:11:42] apptainer version 1.4.1-1.el9
[2025-06-04 21:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 21:11:42] c-3-40.aglt2.org
[2025-06-04 21:11:42] apptainer works
[2025-06-04 21:11:42] Set ATHENA_PROC_NUMBER=10
[2025-06-04 21:11:42] Set ATHENA_CORE_NUMBER=10
[2025-06-04 21:11:42] Starting ATLAS job with PandaID=6680271069
[2025-06-04 21:11:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:33:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:33:38] 2025-06-05 03:33:15,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:33:38] 2025-06-05 03:33:15,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:33:38] 2025-06-05 03:33:15,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:33:38] 2025-06-05 03:33:15,492 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:33:38] 2025-06-05 03:33:15,493 | INFO     | sum of square deviations: 814918380.869565
[2025-06-04 23:33:38] 2025-06-05 03:33:15,494 | INFO     | sum of deviations: 13171611129.478247
[2025-06-04 23:33:38] 2025-06-05 03:33:15,494 | INFO     | mean x: 1749090152.6086957
[2025-06-04 23:33:38] 2025-06-05 03:33:15,494 | INFO     | mean y: 2191121.6014492754
[2025-06-04 23:33:38] 2025-06-05 03:33:15,494 | INFO     | -- intersect: -28268536182.37501
[2025-06-04 23:33:38] 2025-06-05 03:33:15,494 | INFO     | intersect: -28268536182.37501
[2025-06-04 23:33:38] 2025-06-05 03:33:15,518 | INFO     | chi2: 2.639667555669729
[2025-06-04 23:33:38] 2025-06-05 03:33:15,518 | INFO     | sum of square deviations: 729508528.5263141
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | sum of deviations: 20574933155.57896
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | mean x: 1749090000.1052632
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | mean y: 2203921.172932331
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | -- intersect: -49328829820.071785
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | intersect: -49328829820.071785
[2025-06-04 23:33:38] 2025-06-05 03:33:15,519 | INFO     | chi2: 1.9730699277632446
[2025-06-04 23:33:38] 2025-06-05 03:33:15,520 | INFO     | current chi2=1.9730699277632446 (change=25.253090165642362 %)
[2025-06-04 23:33:38] 2025-06-05 03:33:15,520 | INFO     | sum of square deviations: 650284594.6796875
[2025-06-04 23:33:38] 2025-06-05 03:33:15,520 | INFO     | sum of deviations: 19800523692.429688
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | mean x: 1749089847.6015625
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | mean y: 2202442.8515625
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | -- intersect: -53255856030.2731
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | intersect: -53255856030.2731
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | chi2: 1.9749622768855892
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | current chi2=1.9749622768855892 (change=-0.09590887255019091 %)
[2025-06-04 23:33:38] 2025-06-05 03:33:15,521 | INFO     | right removable region: 127
[2025-06-04 23:33:38] 2025-06-05 03:33:15,538 | INFO     | sum of square deviations: 729507553.3082675
[2025-06-04 23:33:38] 2025-06-05 03:33:15,538 | INFO     | sum of deviations: -11665529874.210526
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | mean x: 1749090305.112782
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | mean y: 2235071.947368421
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | -- intersect: 27971877215.40991
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | intersect: 27971877215.40991
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | chi2: 0.7683627669636612
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | current chi2=0.7683627669636612 (change=70.89168424587034 %)
[2025-06-04 23:33:38] 2025-06-05 03:33:15,539 | INFO     | sum of square deviations: 650282888.2421875
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | sum of deviations: -12277383366.203125
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | mean x: 1749090457.6171875
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | mean y: 2236178.546875
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | -- intersect: 33025178160.58489
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | intersect: 33025178160.58489
[2025-06-04 23:33:38] 2025-06-05 03:33:15,540 | INFO     | chi2: 0.7534689404137764
[2025-06-04 23:33:38] 2025-06-05 03:33:15,541 | INFO     | current chi2=0.7534689404137764 (change=1.9383847305278379 %)
[2025-06-04 23:33:38] 2025-06-05 03:33:15,541 | INFO     | left removable region: 20
[2025-06-04 23:33:38] 2025-06-05 03:33:15,541 | INFO     | sum of square deviations: 379849573.4205603
[2025-06-04 23:33:38] 2025-06-05 03:33:15,541 | INFO     | sum of deviations: -3991812007.7009335
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | mean x: 1749090427.1214952
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | mean y: 2252067.1308411215
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | -- intersect: 18383318305.180798
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | intersect: 18383318305.180798
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | chi2: 0.052192731146575404
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | -- intersect: 18383318305.180798
[2025-06-04 23:33:38] 2025-06-05 03:33:15,549 | INFO     | current memory leak: -10.51 B/s (using 107 data points, chi2=0.05)
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | ..............................
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . Timing measurements:
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . get job = 0 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . initial setup = 4 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . payload setup = 15 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . stage-in = 0 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . payload execution = 8401 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . stage-out = 2 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,550 | INFO     | . log creation = 0 s
[2025-06-04 23:33:38] 2025-06-05 03:33:15,551 | INFO     | ..............................
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | 
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | job summary report
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | --------------------------------------------------
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | PanDA job id: 6680271069
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | task id: 45006595
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | errors: (none)
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | pilot state: finished 
[2025-06-04 23:33:38] 2025-06-05 03:33:16,078 | INFO     | transexitcode: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | exeerrorcode: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | exeerrordiag: 
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | exitcode: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | exitmsg: OK
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | cpuconsumptiontime: 38890 s
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | nevents: 400
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | neventsw: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | pid: 267611
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | pgrp: 267611
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | corecount: 10
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | event service: False
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | sizes: {0: 2397070, 1: 2397269, 7: 2397475, 12: 2397503, 8421: 2424999, 8424: 2433940, 8427: 2434124, 8453: 2434294}
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | --------------------------------------------------
[2025-06-04 23:33:38] 2025-06-05 03:33:16,079 | INFO     | 
[2025-06-04 23:33:38] 2025-06-05 03:33:16,080 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 23:33:38] 2025-06-05 03:33:16,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | job 6680271069 has completed (purged errors)
[2025-06-04 23:33:38] 2025-06-05 03:33:16,124 | INFO     | overall cleanup function is called
[2025-06-04 23:33:38] 2025-06-05 03:33:17,195 | INFO     | --- collectZombieJob: --- 10, [267611]
[2025-06-04 23:33:38] 2025-06-05 03:33:17,196 | INFO     | zombie collector waiting for pid 267611
[2025-06-04 23:33:38] 2025-06-05 03:33:17,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:33:38] 2025-06-05 03:33:17,196 | INFO     | collected zombie processes
[2025-06-04 23:33:38] 2025-06-05 03:33:17,196 | INFO     | will attempt to kill all subprocesses of pid=267611
[2025-06-04 23:33:38] 2025-06-05 03:33:17,450 | INFO     | PID=247324 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 23:33:38] 2025-06-05 03:33:17,450 | INFO     | .. there are 53 such processes running
[2025-06-04 23:33:38] 2025-06-05 03:33:18,360 | INFO     | process IDs to be killed: [267611] (in reverse order)
[2025-06-04 23:33:38] 2025-06-05 03:33:18,759 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:33:38] 2025-06-05 03:33:18,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:33:38] 2025-06-05 03:33:18,866 | INFO     | did not find any defunct processes belonging to 267611
[2025-06-04 23:33:38] 2025-06-05 03:33:19,000 | INFO     | did not find any defunct processes belonging to 267611
[2025-06-04 23:33:38] 2025-06-05 03:33:19,000 | INFO     | ready for new job
[2025-06-04 23:33:38] 2025-06-05 03:33:19,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:33:38] 2025-06-05 03:33:19,022 | INFO     | **************************************
[2025-06-04 23:33:38] 2025-06-05 03:33:19,022 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:33:38] 2025-06-05 03:33:19,023 | INFO     | **************************************
[2025-06-04 23:33:38] 2025-06-05 03:33:19,023 | INFO     | 
[2025-06-04 23:33:38] 2025-06-05 03:33:19,036 | INFO     | architecture information:
[2025-06-04 23:33:38] 2025-06-05 03:33:19,047 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:33:38] 2025-06-05 03:33:19,099 | INFO     | cat /etc/os-release:
[2025-06-04 23:33:38] NAME="CentOS Linux"
[2025-06-04 23:33:38] VERSION="7 (Core)"
[2025-06-04 23:33:38] ID="centos"
[2025-06-04 23:33:38] ID_LIKE="rhel fedora"
[2025-06-04 23:33:38] VERSION_ID="7"
[2025-06-04 23:33:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:33:38] ANSI_COLOR="0;31"
[2025-06-04 23:33:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:33:38] HOME_URL="https://www.centos.org/"
[2025-06-04 23:33:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:33:38] 
[2025-06-04 23:33:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:33:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:33:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:33:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:33:38] 
[2025-06-04 23:33:38] 2025-06-05 03:33:19,100 | INFO     | **************************************
[2025-06-04 23:33:38] 2025-06-05 03:33:19,604 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 23:33:38] 2025-06-05 03:33:19,711 | INFO     | sufficient remaining disk space (75964088320 B)
[2025-06-04 23:33:38] 2025-06-05 03:33:19,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:33:38] 2025-06-05 03:33:19,712 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:33:38] 2025-06-05 03:33:19,712 | INFO     | update_server=False
[2025-06-04 23:33:38] 2025-06-05 03:33:19,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:33:38] 2025-06-05 03:33:19,719 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:33:38] 2025-06-05 03:33:19,720 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:33:38] 2025-06-05 03:33:19,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:33:38] 2025-06-05 03:33:19,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:33:38] 2025-06-05 03:33:19,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:33:38] 2025-06-05 03:33:19,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:33:38] 2025-06-05 03:33:19,870 | INFO     | aborting loop
[2025-06-04 23:33:38] 2025-06-05 03:33:19,886 | INFO     | all data control threads have been joined
[2025-06-04 23:33:38] 2025-06-05 03:33:19,891 | INFO     | all payload control threads have been joined
[2025-06-04 23:33:38] 2025-06-05 03:33:20,718 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:20,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:33:38] 2025-06-05 03:33:20,858 | INFO     | all job control threads have been joined
[2025-06-04 23:33:38] 2025-06-05 03:33:20,881 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:20,898 | INFO     | [payload] control thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:20,909 | INFO     | [data] control thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:20,991 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:20,997 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,114 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,221 | INFO     | [job] validate thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,222 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,226 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,728 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,843 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:21,864 | INFO     | [job] control thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:22,100 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:23,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:33:38] 2025-06-05 03:33:27,166 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:29,959 | INFO     | job.realtimelogging is not enabled
[2025-06-04 23:33:38] 2025-06-05 03:33:30,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:33:38] 2025-06-05 03:33:32,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139789994334016)>', '<ExcThread(monitor, started 139789508540160)>']
[2025-06-04 23:33:38] 2025-06-05 03:33:32,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:33:38] 2025-06-05 03:33:32,798 | INFO     | [monitor] control thread has ended
[2025-06-04 23:33:38] 2025-06-05 03:33:37,247 | INFO     | all workflow threads have been joined
[2025-06-04 23:33:38] 2025-06-05 03:33:37,247 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:33:38] 2025-06-05 03:33:37,247 | INFO     | traces error code: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:37,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:33:38] 2025-06-05 03:33:37,518 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:33:38] 2025-06-05 03:33:37,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:33:38] 2025-06-05 03:33:37,559 [wrapper] pilotpid: 247324
[2025-06-04 23:33:38] 2025-06-05 03:33:37,572 [wrapper] Pilot exit status: 0
[2025-06-04 23:33:38] 2025-06-05 03:33:37,626 [wrapper] pandaids: 6680271069
[2025-06-04 23:33:38] 2025-06-05 03:33:37,814 [wrapper] cleanup supervisor_pilot  981017 247325
[2025-06-04 23:33:38] 2025-06-05 03:33:37,819 [wrapper] Test setup, not cleaning
[2025-06-04 23:33:38] 2025-06-05 03:33:37,826 [wrapper] apfmon messages muted
[2025-06-04 23:33:38] 2025-06-05 03:33:37,831 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:33:38] 2025-06-05 03:33:37,861 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:33:38]  *** Error codes and diagnostics ***
[2025-06-04 23:33:38]     "exeErrorCode": 0,
[2025-06-04 23:33:38]     "exeErrorDiag": "",
[2025-06-04 23:33:38]     "pilotErrorCode": 0,
[2025-06-04 23:33:38]     "pilotErrorDiag": "",
[2025-06-04 23:33:38]  *** Listing of results directory ***
[2025-06-04 23:33:38] total 389556
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 21:01 pilot3.tar.gz
[2025-06-04 23:33:38] -rwx------. 1 boincer umatlas     37140 Jun  4 21:11 runpilot2-wrapper.sh
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 21:11 queuedata.json
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas       100 Jun  4 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:33:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 21:11 run_atlas
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas       105 Jun  4 21:11 job.xml
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas 213959611 Jun  4 21:11 EVNT.45006593._002071.pool.root.1
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 21:11 start_atlas.sh
[2025-06-04 23:33:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 21:11 shared
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 21:11 input.tar.gz
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas         0 Jun  4 21:11 boinc_lockfile
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 21:11 pandaJob.out
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas    987117 Jun  4 21:11 agis_schedconf.cvmfs.json
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas   1598969 Jun  4 21:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:33:38] drwx------. 4 boincer umatlas      4096 Jun  4 21:12 pilot3
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas      6839 Jun  4 23:29 init_data.xml
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas 178987757 Jun  4 23:31 HITS.45006595._057007.pool.root.1
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas       530 Jun  4 23:31 boinc_task_state.xml
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas      1055 Jun  4 23:32 memory_monitor_summary.json
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas    372326 Jun  4 23:32 log.45006595._057007.job.log.tgz.1
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas        95 Jun  4 23:32 pilot_heartbeat.json
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas      7719 Jun  4 23:33 heartbeat.json
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 23:33 boinc_mmap_file
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas      4548 Jun  4 23:33 pilotlog.txt
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas        27 Jun  4 23:33 wrapper_checkpoint.txt
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas    691869 Jun  4 23:33 log.45006595._057007.job.log.1
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas       357 Jun  4 23:33 output.list
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas       620 Jun  4 23:33 runtime_log
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas   1085440 Jun  4 23:33 result.tar.gz
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas      8651 Jun  4 23:33 runtime_log.err
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas       650 Jun  4 23:33 rrILDmWJEh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm73nKDmjh1bBo.diag
[2025-06-04 23:33:38] -rw-r--r--. 1 boincer umatlas     20978 Jun  4 23:33 stderr.txt
[2025-06-04 23:33:38] HITS file was successfully produced:
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas 178987757 Jun  4 23:31 shared/HITS.pool.root.1
[2025-06-04 23:33:38]  *** Contents of shared directory: ***
[2025-06-04 23:33:38] total 385324
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas 213959611 Jun  4 21:11 ATLAS.root_0
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 21:11 start_atlas.sh
[2025-06-04 23:33:38] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 21:11 input.tar.gz
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas 178987757 Jun  4 23:31 HITS.pool.root.1
[2025-06-04 23:33:38] -rw-------. 1 boincer umatlas   1085440 Jun  4 23:33 result.tar.gz
23:33:40 (241506): run_atlas exited; CPU time 39230.168498
23:33:40 (241506): called boinc_finish(0)

</stderr_txt>
]]>

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