Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:44 (9099): wrapper (7.7.26015): starting
06:49:44 (9099): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:49:44] Arguments: --nthreads 8
[2025-06-05 06:49:44] Threads: 8
[2025-06-05 06:49:44] Checking for CVMFS
[2025-06-05 06:49:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:49:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:49:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:49:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:49:47] 2.11.2.0 16537 34189 89892 146806 1 60 14540833 25165824 4680 130560 0 17626623 99.787 20122109 2155 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:49:47] CVMFS is ok
[2025-06-05 06:49:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:49:47] Checking for apptainer binary...
[2025-06-05 06:49:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:49:47] Running /usr/bin/apptainer --version
[2025-06-05 06:49:48] apptainer version 1.3.2-1.el7
[2025-06-05 06:49:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:33:11] cg-vwn365.simple-grid.lan
[2025-06-05 08:33:11] apptainer works
[2025-06-05 08:33:11] Set ATHENA_PROC_NUMBER=8
[2025-06-05 08:33:11] Set ATHENA_CORE_NUMBER=8
[2025-06-05 08:33:11] Starting ATLAS job with PandaID=6667434341
[2025-06-05 08:33:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:39:22]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:39:22] 2025-06-05 12:08:51,820 | INFO     | extracted standard info from prmon json
[2025-06-05 14:39:22] 2025-06-05 12:08:51,821 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:39:22] 2025-06-05 12:08:51,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:39:22] 2025-06-05 12:08:51,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:39:22] 2025-06-05 12:08:51,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:39:22] 2025-06-05 12:08:51,828 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:39:22] 2025-06-05 12:08:51,829 | INFO     | sum of square deviations: 9877610318.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,832 | INFO     | sum of deviations: 153800449301.00006
[2025-06-05 14:39:22] 2025-06-05 12:08:51,833 | INFO     | mean x: 1749115574.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,833 | INFO     | mean y: 2452510.476340694
[2025-06-05 14:39:22] 2025-06-05 12:08:51,833 | INFO     | -- intersect: -27232349481.08939
[2025-06-05 14:39:22] 2025-06-05 12:08:51,833 | INFO     | intersect: -27232349481.08939
[2025-06-05 14:39:22] 2025-06-05 12:08:51,834 | INFO     | chi2: 8.584146424261819
[2025-06-05 14:39:22] 2025-06-05 12:08:51,834 | INFO     | sum of square deviations: 9417545878.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,837 | INFO     | sum of deviations: 172383278393.50006
[2025-06-05 14:39:22] 2025-06-05 12:08:51,838 | INFO     | mean x: 1749115421.5
[2025-06-05 14:39:22] 2025-06-05 12:08:51,838 | INFO     | mean y: 2458580.6826923075
[2025-06-05 14:39:22] 2025-06-05 12:08:51,838 | INFO     | -- intersect: -32014189339.36248
[2025-06-05 14:39:22] 2025-06-05 12:08:51,838 | INFO     | intersect: -32014189339.36248
[2025-06-05 14:39:22] 2025-06-05 12:08:51,838 | INFO     | chi2: 7.8721564057517
[2025-06-05 14:39:22] 2025-06-05 12:08:51,839 | INFO     | current chi2=7.8721564057517 (change=8.294243636126529 %)
[2025-06-05 14:39:22] 2025-06-05 12:08:51,839 | INFO     | right removable region: 311
[2025-06-05 14:39:22] 2025-06-05 12:08:51,839 | INFO     | sum of square deviations: 9417545878.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,842 | INFO     | sum of deviations: 40882466417.5
[2025-06-05 14:39:22] 2025-06-05 12:08:51,843 | INFO     | mean x: 1749115726.5
[2025-06-05 14:39:22] 2025-06-05 12:08:51,843 | INFO     | mean y: 2489924.733974359
[2025-06-05 14:39:22] 2025-06-05 12:08:51,843 | INFO     | -- intersect: -7590588556.147663
[2025-06-05 14:39:22] 2025-06-05 12:08:51,843 | INFO     | intersect: -7590588556.147663
[2025-06-05 14:39:22] 2025-06-05 12:08:51,843 | INFO     | chi2: 3.5173356787804706
[2025-06-05 14:39:22] 2025-06-05 12:08:51,844 | INFO     | current chi2=3.5173356787804706 (change=59.02521339991077 %)
[2025-06-05 14:39:22] 2025-06-05 12:08:51,844 | INFO     | sum of square deviations: 8971993338.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,847 | INFO     | sum of deviations: -40121501756.99999
[2025-06-05 14:39:22] 2025-06-05 12:08:51,847 | INFO     | mean x: 1749115879.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,847 | INFO     | mean y: 2517610.1856677523
[2025-06-05 14:39:22] 2025-06-05 12:08:51,848 | INFO     | -- intersect: 7824319652.243213
[2025-06-05 14:39:22] 2025-06-05 12:08:51,848 | INFO     | intersect: 7824319652.243213
[2025-06-05 14:39:22] 2025-06-05 12:08:51,848 | INFO     | chi2: 1.0148309826173998
[2025-06-05 14:39:22] 2025-06-05 12:08:51,848 | INFO     | current chi2=1.0148309826173998 (change=71.14773580640271 %)
[2025-06-05 14:39:22] 2025-06-05 12:08:51,849 | INFO     | sum of square deviations: 8540720135.5
[2025-06-05 14:39:22] 2025-06-05 12:08:51,852 | INFO     | sum of deviations: -49474328465.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,852 | INFO     | mean x: 1749116031.5
[2025-06-05 14:39:22] 2025-06-05 12:08:51,852 | INFO     | mean y: 2520884.7086092713
[2025-06-05 14:39:22] 2025-06-05 12:08:51,852 | INFO     | -- intersect: 10134727501.11967
[2025-06-05 14:39:22] 2025-06-05 12:08:51,852 | INFO     | intersect: 10134727501.11967
[2025-06-05 14:39:22] 2025-06-05 12:08:51,853 | INFO     | chi2: 0.9341308100120914
[2025-06-05 14:39:22] 2025-06-05 12:08:51,853 | INFO     | current chi2=0.9341308100120914 (change=7.952080098813169 %)
[2025-06-05 14:39:22] 2025-06-05 12:08:51,853 | INFO     | left removable region: 30
[2025-06-05 14:39:22] 2025-06-05 12:08:51,853 | INFO     | sum of square deviations: 6880054580.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,856 | INFO     | sum of deviations: 1026678007.0000007
[2025-06-05 14:39:22] 2025-06-05 12:08:51,856 | INFO     | mean x: 1749116306.0
[2025-06-05 14:39:22] 2025-06-05 12:08:51,856 | INFO     | mean y: 2516767.690391459
[2025-06-05 14:39:22] 2025-06-05 12:08:51,856 | INFO     | -- intersect: -258495586.5248688
[2025-06-05 14:39:22] 2025-06-05 12:08:51,857 | INFO     | intersect: -258495586.5248688
[2025-06-05 14:39:22] 2025-06-05 12:08:51,857 | INFO     | chi2: 0.047537759251585654
[2025-06-05 14:39:22] 2025-06-05 12:08:51,857 | INFO     | -- intersect: -258495586.5248688
[2025-06-05 14:39:22] 2025-06-05 12:08:51,857 | INFO     | current memory leak: 0.15 B/s (using 281 data points, chi2=0.05)
[2025-06-05 14:39:22] 2025-06-05 12:08:51,858 | INFO     | ..............................
[2025-06-05 14:39:22] 2025-06-05 12:08:51,858 | INFO     | . Timing measurements:
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . get job = 0 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . initial setup = 9 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . payload setup = 193 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . stage-in = 0 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . payload execution = 19460 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . stage-out = 4 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | . log creation = 1 s
[2025-06-05 14:39:22] 2025-06-05 12:08:51,859 | INFO     | ..............................
[2025-06-05 14:39:22] 2025-06-05 12:08:52,014 | INFO     | 
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | job summary report
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | --------------------------------------------------
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | PanDA job id: 6667434341
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | task id: 44871837
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | errors: (none)
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | pilot state: finished 
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | transexitcode: 0
[2025-06-05 14:39:22] 2025-06-05 12:08:52,015 | INFO     | exeerrorcode: 0
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | exeerrordiag: 
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | exitcode: 0
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | exitmsg: OK
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | cpuconsumptiontime: 72945 s
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | nevents: 400
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | neventsw: 0
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | pid: 11946
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | pgrp: 11946
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | corecount: 8
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | event service: False
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | sizes: {0: 2397164, 1: 2397248, 2: 2397447, 12: 2397447, 23: 2397475, 34: 2397503, 45: 2397659, 55: 2397687, 66: 2397715, 77: 2397743, 88: 2397799, 95: 2398313, 98
[2025-06-05 14:39:22] 2025-06-05 12:08:52,016 | INFO     | --------------------------------------------------
[2025-06-05 14:39:22] 2025-06-05 12:08:52,017 | INFO     | 
[2025-06-05 14:39:22] 2025-06-05 12:08:52,017 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-05 14:39:22] 2025-06-05 12:08:52,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | job 6667434341 has completed (purged errors)
[2025-06-05 14:39:22] 2025-06-05 12:08:52,199 | INFO     | overall cleanup function is called
[2025-06-05 14:39:22] 2025-06-05 12:08:53,208 | INFO     | --- collectZombieJob: --- 10, [11946]
[2025-06-05 14:39:22] 2025-06-05 12:08:53,209 | INFO     | zombie collector waiting for pid 11946
[2025-06-05 14:39:22] 2025-06-05 12:08:53,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:39:22] 2025-06-05 12:08:53,209 | INFO     | collected zombie processes
[2025-06-05 14:39:22] 2025-06-05 12:08:53,209 | INFO     | will attempt to kill all subprocesses of pid=11946
[2025-06-05 14:39:22] 2025-06-05 12:08:53,313 | INFO     | process IDs to be killed: [11946] (in reverse order)
[2025-06-05 14:39:22] 2025-06-05 12:08:54,313 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:39:22] 2025-06-05 12:08:54,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:39:22] 2025-06-05 12:08:54,322 | INFO     | did not find any defunct processes belonging to 11946
[2025-06-05 14:39:22] 2025-06-05 12:08:54,333 | INFO     | did not find any defunct processes belonging to 11946
[2025-06-05 14:39:22] 2025-06-05 12:08:54,334 | INFO     | ready for new job
[2025-06-05 14:39:22] 2025-06-05 12:08:54,334 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:39:22] 2025-06-05 12:08:54,337 | INFO     | **************************************
[2025-06-05 14:39:22] 2025-06-05 12:08:54,337 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:39:22] 2025-06-05 12:08:54,337 | INFO     | **************************************
[2025-06-05 14:39:22] 2025-06-05 12:08:54,337 | INFO     | 
[2025-06-05 14:39:22] 2025-06-05 12:08:54,338 | INFO     | pilot is running in a VM
[2025-06-05 14:39:22] 2025-06-05 12:08:54,338 | INFO     | architecture information:
[2025-06-05 14:39:22] 2025-06-05 12:08:54,352 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:39:22] 2025-06-05 12:08:54,455 | INFO     | cat /etc/os-release:
[2025-06-05 14:39:22] NAME="CentOS Linux"
[2025-06-05 14:39:22] VERSION="7 (Core)"
[2025-06-05 14:39:22] ID="centos"
[2025-06-05 14:39:22] ID_LIKE="rhel fedora"
[2025-06-05 14:39:22] VERSION_ID="7"
[2025-06-05 14:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:39:22] ANSI_COLOR="0;31"
[2025-06-05 14:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:39:22] HOME_URL="https://www.centos.org/"
[2025-06-05 14:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:39:22] 
[2025-06-05 14:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:39:22] 
[2025-06-05 14:39:22] 2025-06-05 12:08:54,455 | INFO     | **************************************
[2025-06-05 14:39:22] 2025-06-05 12:08:54,958 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-05 14:39:22] 2025-06-05 12:08:55,104 | INFO     | sufficient remaining disk space (496234397696 B)
[2025-06-05 14:39:22] 2025-06-05 12:08:55,104 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:39:22] 2025-06-05 12:08:55,105 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:39:22] 2025-06-05 12:08:55,105 | INFO     | update_server=False
[2025-06-05 14:39:22] 2025-06-05 12:08:55,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:39:22] 2025-06-05 12:08:55,105 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:39:22] 2025-06-05 12:08:55,106 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:39:22] 2025-06-05 12:08:55,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:39:22] 2025-06-05 12:08:55,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:39:22] 2025-06-05 12:08:55,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:39:22] 2025-06-05 12:08:55,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:39:22] 2025-06-05 12:08:55,112 | INFO     | aborting loop
[2025-06-05 14:39:22] 2025-06-05 12:08:55,336 | INFO     | all payload control threads have been joined
[2025-06-05 14:39:22] 2025-06-05 12:08:55,824 | INFO     | all job control threads have been joined
[2025-06-05 14:39:22] 2025-06-05 12:08:55,864 | INFO     | all data control threads have been joined
[2025-06-05 14:39:22] 2025-06-05 12:08:56,110 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,117 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,342 | INFO     | [payload] control thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,364 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,379 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,516 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,517 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:39:22] 2025-06-05 12:08:56,830 | INFO     | [job] control thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,870 | INFO     | [data] control thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:56,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:57,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:39:22] 2025-06-05 12:08:57,114 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:57,316 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:57,337 | INFO     | [job] validate thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:57,607 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:08:58,033 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:09:00,641 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:39:22] 2025-06-05 12:09:00,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837006255936)>', '<ExcThread(monitor, started 139836702824192)>']
[2025-06-05 14:39:22] 2025-06-05 12:09:01,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:39:22] 2025-06-05 12:09:01,141 | INFO     | [monitor] control thread has ended
[2025-06-05 14:39:22] 2025-06-05 12:09:05,796 | INFO     | all workflow threads have been joined
[2025-06-05 14:39:22] 2025-06-05 12:09:05,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:39:22] 2025-06-05 12:09:05,797 | INFO     | traces error code: 0
[2025-06-05 14:39:22] 2025-06-05 12:09:05,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:39:22] 2025-06-05 12:09:06,200 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:39:22] 2025-06-05 12:09:06,294 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:39:22] 2025-06-05 12:09:06,405 [wrapper] pilotpid: 5316
[2025-06-05 14:39:22] 2025-06-05 12:09:06,478 [wrapper] Pilot exit status: 0
[2025-06-05 14:39:22] 2025-06-05 12:09:06,889 [wrapper] pandaids: 6667434341
[2025-06-05 14:39:22] 2025-06-05 12:09:07,423 [wrapper] cleanup supervisor_pilot 29405 5317
[2025-06-05 14:39:22] 2025-06-05 12:09:07,512 [wrapper] Test setup, not cleaning
[2025-06-05 14:39:22] 2025-06-05 12:09:07,680 [wrapper] apfmon messages muted
[2025-06-05 14:39:22] 2025-06-05 12:09:07,750 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:39:22] 2025-06-05 12:09:07,837 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:39:22]  *** Error codes and diagnostics ***
[2025-06-05 14:39:22]     "exeErrorCode": 0,
[2025-06-05 14:39:22]     "exeErrorDiag": "",
[2025-06-05 14:39:22]     "pilotErrorCode": 0,
[2025-06-05 14:39:22]     "pilotErrorDiag": "",
[2025-06-05 14:39:22]  *** Listing of results directory ***
[2025-06-05 14:39:22] total 422896
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc    495897 May 27 20:37 pilot3.tar.gz
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc      5111 May 27 21:05 queuedata.json
[2025-06-05 14:39:22] -rwx------. 1 boinc boinc     37140 May 27 21:09 runpilot2-wrapper.sh
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:39:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:49 run_atlas
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:49 job.xml
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc      6392 Jun  5 06:49 init_data.xml
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc 222922729 Jun  5 06:49 EVNT.44871834._002832.pool.root.1
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:49 start_atlas.sh
[2025-06-05 14:39:22] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:49 shared
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc    508874 Jun  5 06:49 input.tar.gz
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:49 boinc_lockfile
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc      2558 Jun  5 08:33 pandaJob.out
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc    986926 Jun  5 08:36 agis_schedconf.cvmfs.json
[2025-06-05 14:39:22] drwx------. 4 boinc boinc      4096 Jun  5 08:36 pilot3
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc 202097424 Jun  5 14:06 HITS.44871837._072134.pool.root.1
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc       531 Jun  5 14:06 boinc_task_state.xml
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc      1013 Jun  5 14:07 memory_monitor_summary.json
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc   1598969 Jun  5 14:07 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc    419438 Jun  5 14:07 log.44871837._072134.job.log.tgz.1
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc        95 Jun  5 14:08 pilot_heartbeat.json
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc      7686 Jun  5 14:08 heartbeat.json
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc      4540 Jun  5 14:09 pilotlog.txt
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc   1680593 Jun  5 14:09 log.44871837._072134.job.log.1
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc       357 Jun  5 14:09 output.list
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc       620 Jun  5 14:09 runtime_log
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc   2119680 Jun  5 14:09 result.tar.gz
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc      8673 Jun  5 14:09 runtime_log.err
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc       657 Jun  5 14:09 GZsKDmqqEe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjBaKDmVaIXQo.diag
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc      8192 Jun  5 14:39 boinc_mmap_file
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc        28 Jun  5 14:39 wrapper_checkpoint.txt
[2025-06-05 14:39:22] -rw-r--r--. 1 boinc boinc     20505 Jun  5 14:39 stderr.txt
[2025-06-05 14:39:22] HITS file was successfully produced:
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc 202097424 Jun  5 14:06 shared/HITS.pool.root.1
[2025-06-05 14:39:22]  *** Contents of shared directory: ***
[2025-06-05 14:39:22] total 417652
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc 222922729 Jun  5 06:49 ATLAS.root_0
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:49 start_atlas.sh
[2025-06-05 14:39:22] -rw-r--r--. 2 boinc boinc    508874 Jun  5 06:49 input.tar.gz
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc 202097424 Jun  5 14:06 HITS.pool.root.1
[2025-06-05 14:39:22] -rw-------. 1 boinc boinc   2119680 Jun  5 14:09 result.tar.gz
14:39:24 (9099): run_atlas exited; CPU time 73214.289692
14:39:24 (9099): called boinc_finish(0)

</stderr_txt>
]]>

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