Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:51:07 (30828): wrapper (7.7.26015): starting
06:51:07 (30828): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:51:07] Arguments: --nthreads 8
[2025-06-05 06:51:07] Threads: 8
[2025-06-05 06:51:07] Checking for CVMFS
[2025-06-05 06:51:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:51:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:51:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:51:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:51:10] 2.11.2.0 16160 34209 91644 146806 2 59 20402058 25165825 3910 130560 0 18201857 99.799 20787971 2247 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:51:10] CVMFS is ok
[2025-06-05 06:51:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:51:10] Checking for apptainer binary...
[2025-06-05 06:51:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:51:10] Running /usr/bin/apptainer --version
[2025-06-05 06:51:10] apptainer version 1.3.2-1.el7
[2025-06-05 06:51:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:51:17] cg-vwn457.simple-grid.lan
[2025-06-05 06:51:17] apptainer works
[2025-06-05 06:51:17] Set ATHENA_PROC_NUMBER=8
[2025-06-05 06:51:17] Set ATHENA_CORE_NUMBER=8
[2025-06-05 06:51:17] Starting ATLAS job with PandaID=6668232156
[2025-06-05 06:51:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:14:48]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:14:48] 2025-06-05 09:45:48,520 | INFO     | extracted standard info from prmon json
[2025-06-05 12:14:48] 2025-06-05 09:45:48,520 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:14:48] 2025-06-05 09:45:48,520 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:14:48] 2025-06-05 09:45:48,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:14:48] 2025-06-05 09:45:48,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:14:48] 2025-06-05 09:45:48,526 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:14:48] 2025-06-05 09:45:48,527 | INFO     | sum of square deviations: 6590404498.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,529 | INFO     | sum of deviations: 132939254073.99998
[2025-06-05 12:14:48] 2025-06-05 09:45:48,530 | INFO     | mean x: 1749108201.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,530 | INFO     | mean y: 2447280.4476534296
[2025-06-05 12:14:48] 2025-06-05 09:45:48,530 | INFO     | -- intersect: -35279930243.75754
[2025-06-05 12:14:48] 2025-06-05 09:45:48,530 | INFO     | intersect: -35279930243.75754
[2025-06-05 12:14:48] 2025-06-05 09:45:48,530 | INFO     | chi2: 6.974792814030009
[2025-06-05 12:14:48] 2025-06-05 09:45:48,531 | INFO     | sum of square deviations: 6239923508.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,533 | INFO     | sum of deviations: 148870828576.50003
[2025-06-05 12:14:48] 2025-06-05 09:45:48,533 | INFO     | mean x: 1749108048.5
[2025-06-05 12:14:48] 2025-06-05 09:45:48,533 | INFO     | mean y: 2454094.9889705884
[2025-06-05 12:14:48] 2025-06-05 09:45:48,533 | INFO     | -- intersect: -41727410720.85069
[2025-06-05 12:14:48] 2025-06-05 09:45:48,534 | INFO     | intersect: -41727410720.85069
[2025-06-05 12:14:48] 2025-06-05 09:45:48,534 | INFO     | chi2: 6.24717523867274
[2025-06-05 12:14:48] 2025-06-05 09:45:48,534 | INFO     | current chi2=6.24717523867274 (change=10.43210307112842 %)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,534 | INFO     | right removable region: 271
[2025-06-05 12:14:48] 2025-06-05 09:45:48,535 | INFO     | sum of square deviations: 6239923508.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,537 | INFO     | sum of deviations: 36132157297.5
[2025-06-05 12:14:48] 2025-06-05 09:45:48,537 | INFO     | mean x: 1749108353.5
[2025-06-05 12:14:48] 2025-06-05 09:45:48,537 | INFO     | mean y: 2489374.783088235
[2025-06-05 12:14:48] 2025-06-05 09:45:48,537 | INFO     | -- intersect: -10125688971.955908
[2025-06-05 12:14:48] 2025-06-05 09:45:48,537 | INFO     | intersect: -10125688971.955908
[2025-06-05 12:14:48] 2025-06-05 09:45:48,538 | INFO     | chi2: 2.185635899859858
[2025-06-05 12:14:48] 2025-06-05 09:45:48,538 | INFO     | current chi2=2.185635899859858 (change=68.66378746816127 %)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,538 | INFO     | sum of square deviations: 5902093918.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,540 | INFO     | sum of deviations: -10857232681.000006
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | mean x: 1749108506.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | mean y: 2510474.2397003747
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | -- intersect: 3220093640.1127133
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | intersect: 3220093640.1127133
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | chi2: 0.8519412521397178
[2025-06-05 12:14:48] 2025-06-05 09:45:48,541 | INFO     | current chi2=0.8519412521397178 (change=61.020897753631154 %)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,542 | INFO     | sum of square deviations: 5576683165.5
[2025-06-05 12:14:48] 2025-06-05 09:45:48,544 | INFO     | sum of deviations: -19196017562.500004
[2025-06-05 12:14:48] 2025-06-05 09:45:48,544 | INFO     | mean x: 1749108658.5
[2025-06-05 12:14:48] 2025-06-05 09:45:48,544 | INFO     | mean y: 2514370.507633588
[2025-06-05 12:14:48] 2025-06-05 09:45:48,544 | INFO     | -- intersect: 6023283263.207751
[2025-06-05 12:14:48] 2025-06-05 09:45:48,544 | INFO     | intersect: 6023283263.207751
[2025-06-05 12:14:48] 2025-06-05 09:45:48,545 | INFO     | chi2: 0.796728113572061
[2025-06-05 12:14:48] 2025-06-05 09:45:48,545 | INFO     | current chi2=0.796728113572061 (change=6.480862199005472 %)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,545 | INFO     | left removable region: 30
[2025-06-05 12:14:48] 2025-06-05 09:45:48,545 | INFO     | sum of square deviations: 4340323240.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,547 | INFO     | sum of deviations: -4363303160.000001
[2025-06-05 12:14:48] 2025-06-05 09:45:48,547 | INFO     | mean x: 1749108933.0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,547 | INFO     | mean y: 2524429.5145228216
[2025-06-05 12:14:48] 2025-06-05 09:45:48,547 | INFO     | -- intersect: 1760894051.4376886
[2025-06-05 12:14:48] 2025-06-05 09:45:48,547 | INFO     | intersect: 1760894051.4376886
[2025-06-05 12:14:48] 2025-06-05 09:45:48,548 | INFO     | chi2: 0.004964827450862155
[2025-06-05 12:14:48] 2025-06-05 09:45:48,548 | INFO     | -- intersect: 1760894051.4376886
[2025-06-05 12:14:48] 2025-06-05 09:45:48,548 | INFO     | current memory leak: -1.01 B/s (using 241 data points, chi2=0.00)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,549 | INFO     | ..............................
[2025-06-05 12:14:48] 2025-06-05 09:45:48,549 | INFO     | . Timing measurements:
[2025-06-05 12:14:48] 2025-06-05 09:45:48,549 | INFO     | . get job = 0 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,549 | INFO     | . initial setup = 8 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | . payload setup = 172 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | . stage-in = 0 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | . payload execution = 17012 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | . stage-out = 3 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | . log creation = 1 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,550 | INFO     | ..............................
[2025-06-05 12:14:48] 2025-06-05 09:45:48,666 | INFO     | 
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | job summary report
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | --------------------------------------------------
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | PanDA job id: 6668232156
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | task id: 44871837
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | errors: (none)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | pilot state: finished 
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | transexitcode: 0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | exeerrorcode: 0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | exeerrordiag: 
[2025-06-05 12:14:48] 2025-06-05 09:45:48,667 | INFO     | exitcode: 0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | exitmsg: OK
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | cpuconsumptiontime: 63950 s
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | nevents: 400
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | neventsw: 0
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | pid: 12749
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | pgrp: 12749
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | corecount: 8
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | event service: False
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | sizes: {0: 2397166, 1: 2397421, 2: 2397421, 13: 2397449, 23: 2397505, 34: 2397533, 45: 2397689, 56: 2397717, 66: 2397745, 77: 2397773, 88: 2398343, 99: 2398343, 17
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | --------------------------------------------------
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | 
[2025-06-05 12:14:48] 2025-06-05 09:45:48,668 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-05 12:14:48] 2025-06-05 09:45:48,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,987 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:14:48] 2025-06-05 09:45:48,990 | INFO     | job 6668232156 has completed (purged errors)
[2025-06-05 12:14:48] 2025-06-05 09:45:48,990 | INFO     | overall cleanup function is called
[2025-06-05 12:14:48] 2025-06-05 09:45:49,999 | INFO     | --- collectZombieJob: --- 10, [12749]
[2025-06-05 12:14:48] 2025-06-05 09:45:49,999 | INFO     | zombie collector waiting for pid 12749
[2025-06-05 12:14:48] 2025-06-05 09:45:49,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:14:48] 2025-06-05 09:45:50,000 | INFO     | collected zombie processes
[2025-06-05 12:14:48] 2025-06-05 09:45:50,000 | INFO     | will attempt to kill all subprocesses of pid=12749
[2025-06-05 12:14:48] 2025-06-05 09:45:50,111 | INFO     | process IDs to be killed: [12749] (in reverse order)
[2025-06-05 12:14:48] 2025-06-05 09:45:51,065 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:14:48] 2025-06-05 09:45:51,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:14:48] 2025-06-05 09:45:51,069 | INFO     | did not find any defunct processes belonging to 12749
[2025-06-05 12:14:48] 2025-06-05 09:45:51,076 | INFO     | did not find any defunct processes belonging to 12749
[2025-06-05 12:14:48] 2025-06-05 09:45:51,077 | INFO     | ready for new job
[2025-06-05 12:14:48] 2025-06-05 09:45:51,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:14:48] 2025-06-05 09:45:51,079 | INFO     | **************************************
[2025-06-05 12:14:48] 2025-06-05 09:45:51,079 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:14:48] 2025-06-05 09:45:51,079 | INFO     | **************************************
[2025-06-05 12:14:48] 2025-06-05 09:45:51,079 | INFO     | 
[2025-06-05 12:14:48] 2025-06-05 09:45:51,080 | INFO     | pilot is running in a VM
[2025-06-05 12:14:48] 2025-06-05 09:45:51,080 | INFO     | architecture information:
[2025-06-05 12:14:48] 2025-06-05 09:45:51,093 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:14:48] 2025-06-05 09:45:51,378 | INFO     | cat /etc/os-release:
[2025-06-05 12:14:48] NAME="CentOS Linux"
[2025-06-05 12:14:48] VERSION="7 (Core)"
[2025-06-05 12:14:48] ID="centos"
[2025-06-05 12:14:48] ID_LIKE="rhel fedora"
[2025-06-05 12:14:48] VERSION_ID="7"
[2025-06-05 12:14:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:14:48] ANSI_COLOR="0;31"
[2025-06-05 12:14:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:14:48] HOME_URL="https://www.centos.org/"
[2025-06-05 12:14:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:14:48] 
[2025-06-05 12:14:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:14:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:14:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:14:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:14:48] 
[2025-06-05 12:14:48] 2025-06-05 09:45:51,379 | INFO     | **************************************
[2025-06-05 12:14:48] 2025-06-05 09:45:51,882 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-05 12:14:48] 2025-06-05 09:45:52,057 | INFO     | sufficient remaining disk space (496703111168 B)
[2025-06-05 12:14:48] 2025-06-05 09:45:52,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:14:48] 2025-06-05 09:45:52,057 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:14:48] 2025-06-05 09:45:52,057 | INFO     | update_server=False
[2025-06-05 12:14:48] 2025-06-05 09:45:52,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:14:48] 2025-06-05 09:45:52,058 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:14:48] 2025-06-05 09:45:52,058 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:14:48] 2025-06-05 09:45:52,058 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:14:48] 2025-06-05 09:45:52,058 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:14:48] 2025-06-05 09:45:52,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:14:48] 2025-06-05 09:45:52,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:14:48] 2025-06-05 09:45:52,322 | INFO     | all data control threads have been joined
[2025-06-05 12:14:48] 2025-06-05 09:45:52,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:14:48] 2025-06-05 09:45:52,338 | INFO     | aborting loop
[2025-06-05 12:14:48] 2025-06-05 09:45:52,982 | INFO     | all job control threads have been joined
[2025-06-05 12:14:48] 2025-06-05 09:45:53,063 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,189 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,209 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,215 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,225 | INFO     | all payload control threads have been joined
[2025-06-05 12:14:48] 2025-06-05 09:45:53,328 | INFO     | [data] control thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,344 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,595 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:14:48] 2025-06-05 09:45:53,789 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:53,988 | INFO     | [job] control thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,066 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,231 | INFO     | [payload] control thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,259 | INFO     | [job] validate thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,412 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,555 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:54,686 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:56,067 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:14:48] 2025-06-05 09:45:56,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781751019328)>', '<ExcThread(monitor, started 139781052823296)>']
[2025-06-05 12:14:48] 2025-06-05 09:45:57,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:14:48] 2025-06-05 09:45:57,088 | INFO     | [monitor] control thread has ended
[2025-06-05 12:14:48] 2025-06-05 09:46:01,129 | INFO     | all workflow threads have been joined
[2025-06-05 12:14:48] 2025-06-05 09:46:01,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:14:48] 2025-06-05 09:46:01,129 | INFO     | traces error code: 0
[2025-06-05 12:14:48] 2025-06-05 09:46:01,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:14:48] 2025-06-05 09:46:01,500 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:14:48] 2025-06-05 09:46:01,542 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:14:48] 2025-06-05 09:46:01,575 [wrapper] pilotpid: 6116
[2025-06-05 12:14:48] 2025-06-05 09:46:01,604 [wrapper] Pilot exit status: 0
[2025-06-05 12:14:48] 2025-06-05 09:46:01,964 [wrapper] pandaids: 6668232156
[2025-06-05 12:14:48] 2025-06-05 09:46:02,558 [wrapper] cleanup supervisor_pilot 25904 6117
[2025-06-05 12:14:48] 2025-06-05 09:46:02,668 [wrapper] Test setup, not cleaning
[2025-06-05 12:14:48] 2025-06-05 09:46:02,723 [wrapper] apfmon messages muted
[2025-06-05 12:14:48] 2025-06-05 09:46:02,820 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:14:48] 2025-06-05 09:46:02,917 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:14:48]  *** Error codes and diagnostics ***
[2025-06-05 12:14:48]     "exeErrorCode": 0,
[2025-06-05 12:14:48]     "exeErrorDiag": "",
[2025-06-05 12:14:48]     "pilotErrorCode": 0,
[2025-06-05 12:14:48]     "pilotErrorDiag": "",
[2025-06-05 12:14:48]  *** Listing of results directory ***
[2025-06-05 12:14:48] total 417936
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc    495897 May 28 10:01 pilot3.tar.gz
[2025-06-05 12:14:48] -rwx------. 1 boinc boinc     37140 May 28 10:16 runpilot2-wrapper.sh
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc      5111 May 28 10:16 queuedata.json
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:14:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:51 run_atlas
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:51 job.xml
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc      6391 Jun  5 06:51 init_data.xml
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc 224642162 Jun  5 06:51 EVNT.44871834._003174.pool.root.1
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:51 start_atlas.sh
[2025-06-05 12:14:48] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:51 shared
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc    508877 Jun  5 06:51 input.tar.gz
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:51 boinc_lockfile
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc      2559 Jun  5 06:51 pandaJob.out
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc    987109 Jun  5 06:54 agis_schedconf.cvmfs.json
[2025-06-05 12:14:48] drwx------. 4 boinc boinc      4096 Jun  5 06:54 pilot3
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc 195689084 Jun  5 11:42 HITS.44871837._081300.pool.root.1
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc       530 Jun  5 11:43 boinc_task_state.xml
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc      1014 Jun  5 11:44 memory_monitor_summary.json
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc   1598969 Jun  5 11:44 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc    422313 Jun  5 11:44 log.44871837._081300.job.log.tgz.1
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc        95 Jun  5 11:45 pilot_heartbeat.json
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc      7690 Jun  5 11:45 heartbeat.json
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc      4540 Jun  5 11:46 pilotlog.txt
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc   1487886 Jun  5 11:46 log.44871837._081300.job.log.1
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc       357 Jun  5 11:46 output.list
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc       620 Jun  5 11:46 runtime_log
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc   1925120 Jun  5 11:46 result.tar.gz
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc      8673 Jun  5 11:46 runtime_log.err
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc       657 Jun  5 11:46 AgpMDma8Qe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4dbKDmvDM3Sn.diag
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:14 boinc_mmap_file
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:14 wrapper_checkpoint.txt
[2025-06-05 12:14:48] -rw-r--r--. 1 boinc boinc     20518 Jun  5 12:14 stderr.txt
[2025-06-05 12:14:48] HITS file was successfully produced:
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc 195689084 Jun  5 11:42 shared/HITS.pool.root.1
[2025-06-05 12:14:48]  *** Contents of shared directory: ***
[2025-06-05 12:14:48] total 412880
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc 224642162 Jun  5 06:51 ATLAS.root_0
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:51 start_atlas.sh
[2025-06-05 12:14:48] -rw-r--r--. 2 boinc boinc    508877 Jun  5 06:51 input.tar.gz
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc 195689084 Jun  5 11:42 HITS.pool.root.1
[2025-06-05 12:14:48] -rw-------. 1 boinc boinc   1925120 Jun  5 11:46 result.tar.gz
12:14:50 (30828): run_atlas exited; CPU time 64154.352124
12:14:50 (30828): called boinc_finish(0)

</stderr_txt>
]]>

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