Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:13:57 (29137): wrapper (7.7.26015): starting
06:13:57 (29137): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 06:13:57] Arguments: --nthreads 8
[2025-06-05 06:13:57] Threads: 8
[2025-06-05 06:13:57] Checking for CVMFS
[2025-06-05 06:13:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 06:13:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 06:13:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 06:14:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 06:14:00] 2.11.2.0 6477 34169 92832 146805 2 16 13951419 25165825 4293 130560 0 17873617 99.842 19218000 1922 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 06:14:00] CVMFS is ok
[2025-06-05 06:14:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 06:14:00] Checking for apptainer binary...
[2025-06-05 06:14:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 06:14:00] Running /usr/bin/apptainer --version
[2025-06-05 06:14:00] apptainer version 1.3.2-1.el7
[2025-06-05 06:14:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 06:30:18] cg-vwn261.simple-grid.lan
[2025-06-05 06:30:18] apptainer works
[2025-06-05 06:30:18] Set ATHENA_PROC_NUMBER=8
[2025-06-05 06:30:18] Set ATHENA_CORE_NUMBER=8
[2025-06-05 06:30:18] Starting ATLAS job with PandaID=6668686978
[2025-06-05 06:30:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:52:25]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:52:25] 2025-06-05 09:54:55,576 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6668686978/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,577 | INFO     | extracted standard info from prmon json
[2025-06-05 12:52:25] 2025-06-05 09:54:55,577 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:52:25] 2025-06-05 09:54:55,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:52:25] 2025-06-05 09:54:55,578 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:52:25] 2025-06-05 09:54:55,578 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:52:25] 2025-06-05 09:54:55,584 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:52:25] 2025-06-05 09:54:55,592 | INFO     | sum of square deviations: 8884603792.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,595 | INFO     | sum of deviations: 122970308059.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,595 | INFO     | mean x: 1749107842.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,595 | INFO     | mean y: 2454704.6830065357
[2025-06-05 12:52:25] 2025-06-05 09:54:55,595 | INFO     | -- intersect: -24206653010.742718
[2025-06-05 12:52:25] 2025-06-05 09:54:55,596 | INFO     | intersect: -24206653010.742718
[2025-06-05 12:52:25] 2025-06-05 09:54:55,596 | INFO     | chi2: 7.295319540564404
[2025-06-05 12:52:25] 2025-06-05 09:54:55,597 | INFO     | sum of square deviations: 8456158550.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,599 | INFO     | sum of deviations: 141446815798.99994
[2025-06-05 12:52:25] 2025-06-05 09:54:55,600 | INFO     | mean x: 1749107690.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,600 | INFO     | mean y: 2461184.2790697673
[2025-06-05 12:52:25] 2025-06-05 09:54:55,600 | INFO     | -- intersect: -29254997953.599125
[2025-06-05 12:52:25] 2025-06-05 09:54:55,600 | INFO     | intersect: -29254997953.599125
[2025-06-05 12:52:25] 2025-06-05 09:54:55,600 | INFO     | chi2: 6.557167532124274
[2025-06-05 12:52:25] 2025-06-05 09:54:55,601 | INFO     | current chi2=6.557167532124274 (change=10.118158695253292 %)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,601 | INFO     | right removable region: 300
[2025-06-05 12:52:25] 2025-06-05 09:54:55,601 | INFO     | sum of square deviations: 8456158550.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,604 | INFO     | sum of deviations: 15957540707.999996
[2025-06-05 12:52:25] 2025-06-05 09:54:55,604 | INFO     | mean x: 1749107995.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,604 | INFO     | mean y: 2492770.395348837
[2025-06-05 12:52:25] 2025-06-05 09:54:55,604 | INFO     | -- intersect: -3298233187.835502
[2025-06-05 12:52:25] 2025-06-05 09:54:55,605 | INFO     | intersect: -3298233187.835502
[2025-06-05 12:52:25] 2025-06-05 09:54:55,605 | INFO     | chi2: 2.502085865525094
[2025-06-05 12:52:25] 2025-06-05 09:54:55,605 | INFO     | current chi2=2.502085865525094 (change=65.70286124394327 %)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,606 | INFO     | sum of square deviations: 8041713570.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,608 | INFO     | sum of deviations: -41469348637.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,608 | INFO     | mean x: 1749108147.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,609 | INFO     | mean y: 2513822.847972973
[2025-06-05 12:52:25] 2025-06-05 09:54:55,609 | INFO     | -- intersect: 9022279938.86114
[2025-06-05 12:52:25] 2025-06-05 09:54:55,609 | INFO     | intersect: 9022279938.86114
[2025-06-05 12:52:25] 2025-06-05 09:54:55,609 | INFO     | chi2: 0.9839177715726425
[2025-06-05 12:52:25] 2025-06-05 09:54:55,609 | INFO     | current chi2=0.9839177715726425 (change=60.676098884953525 %)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,610 | INFO     | sum of square deviations: 7641036290.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,612 | INFO     | sum of deviations: -45066347075.00001
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | mean x: 1749108300.0
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | mean y: 2515170.12371134
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | -- intersect: 10318644910.630836
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | intersect: 10318644910.630836
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | chi2: 0.9562749704079234
[2025-06-05 12:52:25] 2025-06-05 09:54:55,613 | INFO     | current chi2=0.9562749704079234 (change=2.8094625347132682 %)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,614 | INFO     | left removable region: 30
[2025-06-05 12:52:25] 2025-06-05 09:54:55,614 | INFO     | sum of square deviations: 6103286527.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,616 | INFO     | sum of deviations: 3889586706.4999995
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | mean x: 1749108574.5
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | mean y: 2510862.855555556
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | -- intersect: -1112185199.4948227
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | intersect: -1112185199.4948227
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | chi2: 0.04813356157345477
[2025-06-05 12:52:25] 2025-06-05 09:54:55,617 | INFO     | -- intersect: -1112185199.4948227
[2025-06-05 12:52:25] 2025-06-05 09:54:55,618 | INFO     | current memory leak: 0.64 B/s (using 270 data points, chi2=0.05)
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | ..............................
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . Timing measurements:
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . get job = 0 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . initial setup = 11 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . payload setup = 177 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . stage-in = 0 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . payload execution = 18809 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . stage-out = 3 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | . log creation = 1 s
[2025-06-05 12:52:25] 2025-06-05 09:54:55,619 | INFO     | ..............................
[2025-06-05 12:52:25] 2025-06-05 09:54:56,184 | INFO     | 
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | job summary report
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | --------------------------------------------------
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | PanDA job id: 6668686978
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | task id: 44871837
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | errors: (none)
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | pilot state: finished 
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | transexitcode: 0
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | exeerrorcode: 0
[2025-06-05 12:52:25] 2025-06-05 09:54:56,185 | INFO     | exeerrordiag: 
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | exitcode: 0
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | exitmsg: OK
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | cpuconsumptiontime: 70953 s
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | nevents: 400
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | neventsw: 0
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | pid: 17847
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | pgrp: 17847
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | corecount: 8
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | event service: False
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | sizes: {0: 2396514, 1: 2397199, 2: 2397398, 13: 2397398, 23: 2397454, 34: 2397482, 45: 2397638, 56: 2397666, 66: 2397694, 77: 2397722, 88: 2397778, 93: 2398292, 99
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | --------------------------------------------------
[2025-06-05 12:52:25] 2025-06-05 09:54:56,186 | INFO     | 
[2025-06-05 12:52:25] 2025-06-05 09:54:56,187 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 12:52:25] 2025-06-05 09:54:56,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | job 6668686978 has completed (purged errors)
[2025-06-05 12:52:25] 2025-06-05 09:54:56,313 | INFO     | overall cleanup function is called
[2025-06-05 12:52:25] 2025-06-05 09:54:57,322 | INFO     | --- collectZombieJob: --- 10, [17847]
[2025-06-05 12:52:25] 2025-06-05 09:54:57,323 | INFO     | zombie collector waiting for pid 17847
[2025-06-05 12:52:25] 2025-06-05 09:54:57,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:52:25] 2025-06-05 09:54:57,323 | INFO     | collected zombie processes
[2025-06-05 12:52:25] 2025-06-05 09:54:57,323 | INFO     | will attempt to kill all subprocesses of pid=17847
[2025-06-05 12:52:25] 2025-06-05 09:54:57,440 | INFO     | process IDs to be killed: [17847] (in reverse order)
[2025-06-05 12:52:25] 2025-06-05 09:54:58,034 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:52:25] 2025-06-05 09:54:58,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:52:25] 2025-06-05 09:54:58,038 | INFO     | did not find any defunct processes belonging to 17847
[2025-06-05 12:52:25] 2025-06-05 09:54:58,045 | INFO     | did not find any defunct processes belonging to 17847
[2025-06-05 12:52:25] 2025-06-05 09:54:58,045 | INFO     | ready for new job
[2025-06-05 12:52:25] 2025-06-05 09:54:58,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:52:25] 2025-06-05 09:54:58,051 | INFO     | **************************************
[2025-06-05 12:52:25] 2025-06-05 09:54:58,051 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:52:25] 2025-06-05 09:54:58,052 | INFO     | **************************************
[2025-06-05 12:52:25] 2025-06-05 09:54:58,052 | INFO     | 
[2025-06-05 12:52:25] 2025-06-05 09:54:58,052 | INFO     | pilot is running in a VM
[2025-06-05 12:52:25] 2025-06-05 09:54:58,052 | INFO     | architecture information:
[2025-06-05 12:52:25] 2025-06-05 09:54:58,070 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:52:25] 2025-06-05 09:54:58,235 | INFO     | cat /etc/os-release:
[2025-06-05 12:52:25] NAME="CentOS Linux"
[2025-06-05 12:52:25] VERSION="7 (Core)"
[2025-06-05 12:52:25] ID="centos"
[2025-06-05 12:52:25] ID_LIKE="rhel fedora"
[2025-06-05 12:52:25] VERSION_ID="7"
[2025-06-05 12:52:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:52:25] ANSI_COLOR="0;31"
[2025-06-05 12:52:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:52:25] HOME_URL="https://www.centos.org/"
[2025-06-05 12:52:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:52:25] 
[2025-06-05 12:52:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:52:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:52:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:52:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:52:25] 
[2025-06-05 12:52:25] 2025-06-05 09:54:58,235 | INFO     | **************************************
[2025-06-05 12:52:25] 2025-06-05 09:54:58,738 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 12:52:25] 2025-06-05 09:54:59,039 | INFO     | sufficient remaining disk space (496800628736 B)
[2025-06-05 12:52:25] 2025-06-05 09:54:59,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:52:25] 2025-06-05 09:54:59,040 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:52:25] 2025-06-05 09:54:59,040 | INFO     | update_server=False
[2025-06-05 12:52:25] 2025-06-05 09:54:59,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:52:25] 2025-06-05 09:54:59,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:52:25] 2025-06-05 09:54:59,041 | INFO     | aborting loop
[2025-06-05 12:52:25] 2025-06-05 09:54:59,050 | INFO     | all job control threads have been joined
[2025-06-05 12:52:25] 2025-06-05 09:54:59,724 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:52:25] 2025-06-05 09:54:59,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:52:25] 2025-06-05 09:54:59,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:52:25] 2025-06-05 09:55:00,046 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,046 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,056 | INFO     | [job] control thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,066 | INFO     | all payload control threads have been joined
[2025-06-05 12:52:25] 2025-06-05 09:55:00,113 | INFO     | [job] validate thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,122 | INFO     | all data control threads have been joined
[2025-06-05 12:52:25] 2025-06-05 09:55:00,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:52:25] 2025-06-05 09:55:00,658 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:52:25] 2025-06-05 09:55:00,893 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,900 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,942 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:00,950 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:01,072 | INFO     | [payload] control thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:01,128 | INFO     | [data] control thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:01,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:52:25] 2025-06-05 09:55:01,481 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:01,804 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:02,526 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:05,169 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:52:25] 2025-06-05 09:55:06,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332753454912)>', '<ExcThread(monitor, started 140332436002560)>']
[2025-06-05 12:52:25] 2025-06-05 09:55:06,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:52:25] 2025-06-05 09:55:06,768 | INFO     | [monitor] control thread has ended
[2025-06-05 12:52:25] 2025-06-05 09:55:11,488 | INFO     | all workflow threads have been joined
[2025-06-05 12:52:25] 2025-06-05 09:55:11,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:52:25] 2025-06-05 09:55:11,489 | INFO     | traces error code: 0
[2025-06-05 12:52:25] 2025-06-05 09:55:11,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:52:25] 2025-06-05 09:55:11,978 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:52:25] 2025-06-05 09:55:12,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:52:25] 2025-06-05 09:55:12,081 [wrapper] pilotpid: 9255
[2025-06-05 12:52:25] 2025-06-05 09:55:12,130 [wrapper] Pilot exit status: 0
[2025-06-05 12:52:25] 2025-06-05 09:55:12,582 [wrapper] pandaids: 6668686978
[2025-06-05 12:52:25] 2025-06-05 09:55:13,324 [wrapper] cleanup supervisor_pilot 19088 9256
[2025-06-05 12:52:25] 2025-06-05 09:55:13,385 [wrapper] Test setup, not cleaning
[2025-06-05 12:52:25] 2025-06-05 09:55:13,432 [wrapper] apfmon messages muted
[2025-06-05 12:52:25] 2025-06-05 09:55:13,476 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:52:25] 2025-06-05 09:55:13,510 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:52:25]  *** Error codes and diagnostics ***
[2025-06-05 12:52:25]     "exeErrorCode": 0,
[2025-06-05 12:52:25]     "exeErrorDiag": "",
[2025-06-05 12:52:25]     "pilotErrorCode": 0,
[2025-06-05 12:52:25]     "pilotErrorDiag": "",
[2025-06-05 12:52:25]  *** Listing of results directory ***
[2025-06-05 12:52:25] total 420220
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc    495897 May 28 17:15 pilot3.tar.gz
[2025-06-05 12:52:25] -rwx------. 1 boinc boinc     37140 May 28 17:29 runpilot2-wrapper.sh
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc      5111 May 28 17:29 queuedata.json
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc       100 Jun  5 06:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:52:25] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 06:13 run_atlas
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc       105 Jun  5 06:13 job.xml
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc      6391 Jun  5 06:13 init_data.xml
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc 223965683 Jun  5 06:13 EVNT.44871834._001921.pool.root.1
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:13 start_atlas.sh
[2025-06-05 12:52:25] drwxrwx--x. 2 boinc boinc        68 Jun  5 06:13 shared
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc    508877 Jun  5 06:13 input.tar.gz
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc         0 Jun  5 06:13 boinc_lockfile
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc      2559 Jun  5 06:30 pandaJob.out
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc    987109 Jun  5 06:33 agis_schedconf.cvmfs.json
[2025-06-05 12:52:25] drwx------. 4 boinc boinc      4096 Jun  5 06:33 pilot3
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc 198413694 Jun  5 11:52 HITS.44871837._086371.pool.root.1
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc       531 Jun  5 11:52 boinc_task_state.xml
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc      1024 Jun  5 11:53 memory_monitor_summary.json
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc   1598969 Jun  5 11:53 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc    426994 Jun  5 11:53 log.44871837._086371.job.log.tgz.1
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc      7685 Jun  5 11:54 heartbeat.json
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc        95 Jun  5 11:54 pilot_heartbeat.json
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc      4416 Jun  5 11:55 pilotlog.txt
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc   1626669 Jun  5 11:55 log.44871837._086371.job.log.1
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc       357 Jun  5 11:55 output.list
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc       620 Jun  5 11:55 runtime_log
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc   2068480 Jun  5 11:55 result.tar.gz
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc       657 Jun  5 11:55 XgLKDmftXe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxRcKDmIMIsTm.diag
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc      8659 Jun  5 11:55 runtime_log.err
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:52 boinc_mmap_file
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:52 wrapper_checkpoint.txt
[2025-06-05 12:52:25] -rw-r--r--. 1 boinc boinc     20531 Jun  5 12:52 stderr.txt
[2025-06-05 12:52:25] HITS file was successfully produced:
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc 198413694 Jun  5 11:52 shared/HITS.pool.root.1
[2025-06-05 12:52:25]  *** Contents of shared directory: ***
[2025-06-05 12:52:25] total 415020
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc 223965683 Jun  5 06:13 ATLAS.root_0
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc     15093 Jun  5 06:13 start_atlas.sh
[2025-06-05 12:52:25] -rw-r--r--. 2 boinc boinc    508877 Jun  5 06:13 input.tar.gz
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc 198413694 Jun  5 11:52 HITS.pool.root.1
[2025-06-05 12:52:25] -rw-------. 1 boinc boinc   2068480 Jun  5 11:55 result.tar.gz
12:52:27 (29137): run_atlas exited; CPU time 71209.931929
12:52:27 (29137): called boinc_finish(0)

</stderr_txt>
]]>

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