Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:21:01 (94666): wrapper (7.7.26015): starting
20:21:01 (94666): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:21:01] Arguments: --nthreads 8
[2025-06-04 20:21:01] Threads: 8
[2025-06-04 20:21:01] Checking for CVMFS
[2025-06-04 20:21:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:21:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:21:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:21:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:21:01] 2.12.6.0 311205 24005 550020 146799 2 70 36739139 40960000 16768 16776704 1 129314530 99.729 89369747 24891 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 20:21:01] CVMFS is ok
[2025-06-04 20:21:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 20:21:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 20:21:01] Further information can be found at the LHC@home message board.
[2025-06-04 20:21:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:21:01] Checking for apptainer binary...
[2025-06-04 20:21:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:21:01] Running /usr/bin/apptainer --version
[2025-06-04 20:21:01] apptainer version 1.4.1-1.el9
[2025-06-04 20:21:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:21:02] c7-10-13.aglt2.org
[2025-06-04 20:21:02] apptainer works
[2025-06-04 20:21:02] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:21:02] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:21:02] Starting ATLAS job with PandaID=6668689264
[2025-06-04 20:21:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:36:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:36:12] 2025-06-05 03:35:49,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:36:12] 2025-06-05 03:35:52,400 | INFO     | monitor loop #727: job 0:6668689264 is in state 'finished'
[2025-06-04 23:36:12] 2025-06-05 03:35:52,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:36:12] 2025-06-05 03:35:54,602 | INFO     | PID=103973 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 23:36:12] 2025-06-05 03:35:54,602 | INFO     | .. there are 21 such processes running
[2025-06-04 23:36:12] 2025-06-05 03:35:54,905 | INFO     | monitor loop #728: job 0:6668689264 is in state 'finished'
[2025-06-04 23:36:12] 2025-06-05 03:35:54,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,144 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 23:36:12] 2025-06-05 03:35:55,144 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668689264/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,145 | INFO     | extracted standard info from prmon json
[2025-06-04 23:36:12] 2025-06-05 03:35:55,145 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:36:12] 2025-06-05 03:35:55,145 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:36:12] 2025-06-05 03:35:55,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:36:12] 2025-06-05 03:35:55,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:36:12] 2025-06-05 03:35:55,149 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:36:12] 2025-06-05 03:35:55,149 | INFO     | sum of square deviations: 2160576125.1937294
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | sum of deviations: -12330674643.198954
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | mean x: 1749088696.3455498
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | mean y: 2174484.942408377
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | -- intersect: 9984439578.610481
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | intersect: 9984439578.610481
[2025-06-04 23:36:12] 2025-06-05 03:35:55,150 | INFO     | chi2: 1.617857536290337
[2025-06-04 23:36:12] 2025-06-05 03:35:55,151 | INFO     | sum of square deviations: 1995307207.784946
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | sum of deviations: -9940241919.064512
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | mean x: 1749088543.8494623
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | mean y: 2176660.35483871
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | -- intersect: 8715803913.287527
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | intersect: 8715803913.287527
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | chi2: 1.6047842976560827
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | current chi2=1.6047842976560827 (change=0.8080587036254442 %)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,152 | INFO     | right removable region: 185
[2025-06-04 23:36:12] 2025-06-05 03:35:55,153 | INFO     | sum of square deviations: 1995278477.0806456
[2025-06-04 23:36:12] 2025-06-05 03:35:55,154 | INFO     | sum of deviations: -36977216260.66131
[2025-06-04 23:36:12] 2025-06-05 03:35:55,154 | INFO     | mean x: 1749088848.8548386
[2025-06-04 23:36:12] 2025-06-05 03:35:55,154 | INFO     | mean y: 2196975.790322581
[2025-06-04 23:36:12] 2025-06-05 03:35:55,154 | INFO     | -- intersect: 32416938760.529373
[2025-06-04 23:36:12] 2025-06-05 03:35:55,154 | INFO     | intersect: 32416938760.529373
[2025-06-04 23:36:12] 2025-06-05 03:35:55,156 | INFO     | chi2: 0.2283935543626845
[2025-06-04 23:36:12] 2025-06-05 03:35:55,156 | INFO     | current chi2=0.2283935543626845 (change=85.88296254524492 %)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,156 | INFO     | sum of square deviations: 1838632153.9337027
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | sum of deviations: -36888349448.15471
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | mean x: 1749089001.364641
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | mean y: 2196834.850828729
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | -- intersect: 35094048220.2527
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | intersect: 35094048220.2527
[2025-06-04 23:36:12] 2025-06-05 03:35:55,157 | INFO     | chi2: 0.19411363164751685
[2025-06-04 23:36:12] 2025-06-05 03:35:55,158 | INFO     | current chi2=0.19411363164751685 (change=15.009146300482628 %)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,158 | INFO     | left removable region: 20
[2025-06-04 23:36:12] 2025-06-05 03:35:55,158 | INFO     | sum of square deviations: 1392829877.393939
[2025-06-04 23:36:12] 2025-06-05 03:35:55,158 | INFO     | sum of deviations: -27073881090.969704
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | mean x: 1749089123.3939395
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | mean y: 2192404.6303030304
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | -- intersect: 34001054514.68143
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | intersect: 34001054514.68143
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | chi2: 0.1753395593804895
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | -- intersect: 34001054514.68143
[2025-06-04 23:36:12] 2025-06-05 03:35:55,159 | INFO     | current memory leak: -19.44 B/s (using 165 data points, chi2=0.18)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | ..............................
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . Timing measurements:
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . get job = 0 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . initial setup = 2 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . payload setup = 6 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . stage-in = 0 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . payload execution = 11638 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . stage-out = 2 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | . log creation = 0 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,160 | INFO     | ..............................
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | 
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | job summary report
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | --------------------------------------------------
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | PanDA job id: 6668689264
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | task id: 44871837
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | errors: (none)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | pilot state: finished 
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | transexitcode: 0
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | exeerrorcode: 0
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | exeerrordiag: 
[2025-06-04 23:36:12] 2025-06-05 03:35:55,239 | INFO     | exitcode: 0
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | exitmsg: OK
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | cpuconsumptiontime: 42263 s
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | nevents: 400
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | neventsw: 0
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | pid: 120134
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | pgrp: 120134
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | corecount: 8
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | event service: False
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | sizes: {0: 2397219, 1: 2397418, 6: 2397624, 11: 2397652, 11649: 2426628, 11652: 2435753, 11666: 2435867}
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | --------------------------------------------------
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | 
[2025-06-04 23:36:12] 2025-06-05 03:35:55,240 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:36:12] 2025-06-05 03:35:55,263 | INFO     | job 6668689264 has completed (purged errors)
[2025-06-04 23:36:12] 2025-06-05 03:35:55,263 | INFO     | overall cleanup function is called
[2025-06-04 23:36:12] 2025-06-05 03:35:56,272 | INFO     | --- collectZombieJob: --- 10, [120134]
[2025-06-04 23:36:12] 2025-06-05 03:35:56,272 | INFO     | zombie collector waiting for pid 120134
[2025-06-04 23:36:12] 2025-06-05 03:35:56,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:36:12] 2025-06-05 03:35:56,272 | INFO     | collected zombie processes
[2025-06-04 23:36:12] 2025-06-05 03:35:56,272 | INFO     | will attempt to kill all subprocesses of pid=120134
[2025-06-04 23:36:12] 2025-06-05 03:35:56,993 | INFO     | process IDs to be killed: [120134] (in reverse order)
[2025-06-04 23:36:12] 2025-06-05 03:35:57,127 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:36:12] 2025-06-05 03:35:57,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:36:12] 2025-06-05 03:35:57,143 | INFO     | did not find any defunct processes belonging to 120134
[2025-06-04 23:36:12] 2025-06-05 03:35:57,160 | INFO     | did not find any defunct processes belonging to 120134
[2025-06-04 23:36:12] 2025-06-05 03:35:57,161 | INFO     | ready for new job
[2025-06-04 23:36:12] 2025-06-05 03:35:57,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:36:12] 2025-06-05 03:35:57,163 | INFO     | **************************************
[2025-06-04 23:36:12] 2025-06-05 03:35:57,163 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:36:12] 2025-06-05 03:35:57,163 | INFO     | **************************************
[2025-06-04 23:36:12] 2025-06-05 03:35:57,163 | INFO     | 
[2025-06-04 23:36:12] 2025-06-05 03:35:57,179 | INFO     | architecture information:
[2025-06-04 23:36:12] 2025-06-05 03:35:57,180 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:36:12] 2025-06-05 03:35:57,201 | INFO     | cat /etc/os-release:
[2025-06-04 23:36:12] NAME="CentOS Linux"
[2025-06-04 23:36:12] VERSION="7 (Core)"
[2025-06-04 23:36:12] ID="centos"
[2025-06-04 23:36:12] ID_LIKE="rhel fedora"
[2025-06-04 23:36:12] VERSION_ID="7"
[2025-06-04 23:36:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:36:12] ANSI_COLOR="0;31"
[2025-06-04 23:36:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:36:12] HOME_URL="https://www.centos.org/"
[2025-06-04 23:36:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:36:12] 
[2025-06-04 23:36:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:36:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:36:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:36:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:36:12] 
[2025-06-04 23:36:12] 2025-06-05 03:35:57,201 | INFO     | **************************************
[2025-06-04 23:36:12] 2025-06-05 03:35:57,704 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 23:36:12] 2025-06-05 03:35:57,724 | INFO     | sufficient remaining disk space (85894103040 B)
[2025-06-04 23:36:12] 2025-06-05 03:35:57,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:36:12] 2025-06-05 03:35:57,724 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:36:12] 2025-06-05 03:35:57,724 | INFO     | update_server=False
[2025-06-04 23:36:12] 2025-06-05 03:35:57,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:36:12] 2025-06-05 03:35:57,759 | INFO     | all job control threads have been joined
[2025-06-04 23:36:12] 2025-06-05 03:35:58,067 | INFO     | all data control threads have been joined
[2025-06-04 23:36:12] 2025-06-05 03:35:58,179 | INFO     | all payload control threads have been joined
[2025-06-04 23:36:12] 2025-06-05 03:35:58,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:36:12] 2025-06-05 03:35:58,422 | INFO     | aborting loop
[2025-06-04 23:36:12] 2025-06-05 03:35:58,652 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:36:12] 2025-06-05 03:35:58,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:36:12] 2025-06-05 03:35:58,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:36:12] 2025-06-05 03:35:58,730 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:58,765 | INFO     | [job] control thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:58,772 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:58,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:36:12] 2025-06-05 03:35:59,021 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,071 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,075 | INFO     | [data] control thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,185 | INFO     | [payload] control thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,312 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,427 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:35:59,746 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:00,206 | INFO     | [job] validate thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:00,232 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:00,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:36:12] 2025-06-05 03:36:00,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:36:12] 2025-06-05 03:36:01,032 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:01,259 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:04,589 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:36:12] 2025-06-05 03:36:06,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239018547008)>', '<ExcThread(monitor, started 140238391338752)>']
[2025-06-04 23:36:12] 2025-06-05 03:36:06,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:36:12] 2025-06-05 03:36:06,701 | INFO     | [monitor] control thread has ended
[2025-06-04 23:36:12] 2025-06-05 03:36:11,548 | INFO     | all workflow threads have been joined
[2025-06-04 23:36:12] 2025-06-05 03:36:11,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:36:12] 2025-06-05 03:36:11,549 | INFO     | traces error code: 0
[2025-06-04 23:36:12] 2025-06-05 03:36:11,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:36:12] 2025-06-05 03:36:11,657 [wrapper] supervise_pilot (15 min periods counter: 14)
[2025-06-04 23:36:12] 2025-06-05 03:36:11,957 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:36:12] 2025-06-05 03:36:11,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:36:12] 2025-06-05 03:36:11,974 [wrapper] pilotpid: 103973
[2025-06-04 23:36:12] 2025-06-05 03:36:11,980 [wrapper] Pilot exit status: 0
[2025-06-04 23:36:12] 2025-06-05 03:36:12,013 [wrapper] pandaids: 6668689264
[2025-06-04 23:36:12] 2025-06-05 03:36:12,098 [wrapper] cleanup supervisor_pilot  926728 103974
[2025-06-04 23:36:12] 2025-06-05 03:36:12,102 [wrapper] Test setup, not cleaning
[2025-06-04 23:36:12] 2025-06-05 03:36:12,111 [wrapper] apfmon messages muted
[2025-06-04 23:36:12] 2025-06-05 03:36:12,115 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:36:12] 2025-06-05 03:36:12,118 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:36:12]  *** Error codes and diagnostics ***
[2025-06-04 23:36:12]     "exeErrorCode": 0,
[2025-06-04 23:36:12]     "exeErrorDiag": "",
[2025-06-04 23:36:12]     "pilotErrorCode": 0,
[2025-06-04 23:36:12]     "pilotErrorDiag": "",
[2025-06-04 23:36:12]  *** Listing of results directory ***
[2025-06-04 23:36:12] total 412704
[2025-06-04 23:36:12] -rwx------. 1 boincer umatlas     37140 May 28 12:47 runpilot2-wrapper.sh
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas      5111 May 28 12:47 queuedata.json
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas    495897 May 28 12:47 pilot3.tar.gz
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas       100 Jun  4 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:36:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 20:20 run_atlas
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas       105 Jun  4 20:20 job.xml
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas 223150198 Jun  4 20:21 EVNT.44871834._003405.pool.root.1
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 20:21 start_atlas.sh
[2025-06-04 23:36:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 20:21 shared
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas    508867 Jun  4 20:21 input.tar.gz
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas         0 Jun  4 20:21 boinc_lockfile
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas      2558 Jun  4 20:21 pandaJob.out
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas    987117 Jun  4 20:21 agis_schedconf.cvmfs.json
[2025-06-04 23:36:12] drwx------. 4 boincer umatlas      4096 Jun  4 20:21 pilot3
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas      6898 Jun  4 23:30 init_data.xml
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas 192968839 Jun  4 23:35 HITS.44871837._087402.pool.root.1
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas       530 Jun  4 23:35 boinc_task_state.xml
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas        95 Jun  4 23:35 pilot_heartbeat.json
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas      1030 Jun  4 23:35 memory_monitor_summary.json
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas   1598969 Jun  4 23:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas    355940 Jun  4 23:35 log.44871837._087402.job.log.tgz.1
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas      7691 Jun  4 23:35 heartbeat.json
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 23:36 boinc_mmap_file
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas        28 Jun  4 23:36 wrapper_checkpoint.txt
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas      4353 Jun  4 23:36 pilotlog.txt
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas    971957 Jun  4 23:36 log.44871837._087402.job.log.1
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas       357 Jun  4 23:36 output.list
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas       620 Jun  4 23:36 runtime_log
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas   1351680 Jun  4 23:36 result.tar.gz
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas      8660 Jun  4 23:36 runtime_log.err
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas       655 Jun  4 23:36 3lNKDmW7Ye7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdnTKDm18augm.diag
[2025-06-04 23:36:12] -rw-r--r--. 1 boincer umatlas     21184 Jun  4 23:36 stderr.txt
[2025-06-04 23:36:12] HITS file was successfully produced:
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas 192968839 Jun  4 23:35 shared/HITS.pool.root.1
[2025-06-04 23:36:12]  *** Contents of shared directory: ***
[2025-06-04 23:36:12] total 408212
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas 223150198 Jun  4 20:21 ATLAS.root_0
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 20:21 start_atlas.sh
[2025-06-04 23:36:12] -rw-r--r--. 2 boincer umatlas    508867 Jun  4 20:21 input.tar.gz
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas 192968839 Jun  4 23:35 HITS.pool.root.1
[2025-06-04 23:36:12] -rw-------. 1 boincer umatlas   1351680 Jun  4 23:36 result.tar.gz
23:36:14 (94666): run_atlas exited; CPU time 42419.941850
23:36:14 (94666): called boinc_finish(0)

</stderr_txt>
]]>

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