Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:54:29 (5801): wrapper (7.7.26015): starting
19:54:29 (5801): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:54:29] Arguments: --nthreads 8
[2025-06-04 19:54:29] Threads: 8
[2025-06-04 19:54:29] Checking for CVMFS
[2025-06-04 19:54:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:54:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:54:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:54:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:54:30] 2.11.2.0 2853 36368 94584 146798 2 1 13519436 20275200 1 130560 0 12298499 99.959 7088683 8081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 19:54:30] CVMFS is ok
[2025-06-04 19:54:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:54:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:54:30] Further information can be found at the LHC@home message board.
[2025-06-04 19:54:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:54:30] Checking for apptainer binary...
[2025-06-04 19:54:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:54:30] Running /usr/bin/apptainer --version
[2025-06-04 19:54:30] apptainer version 1.3.2-1.el7
[2025-06-04 19:54:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:54:31] c-204-7.aglt2.org
[2025-06-04 19:54:31] apptainer works
[2025-06-04 19:54:31] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:54:31] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:54:31] Starting ATLAS job with PandaID=6667366139
[2025-06-04 19:54:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:30:58]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:30:58] 2025-06-05 02:30:38,546 | INFO     | PID=9477 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 22:30:58] 2025-06-05 02:30:40,271 | INFO     | monitor loop #691: job 0:6667366139 is in state 'finished'
[2025-06-04 22:30:58] 2025-06-05 02:30:40,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 22:30:58] 2025-06-05 02:30:42,775 | INFO     | monitor loop #692: job 0:6667366139 is in state 'finished'
[2025-06-04 22:30:58] 2025-06-05 02:30:42,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,062 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 22:30:58] 2025-06-05 02:30:43,062 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667366139/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,063 | INFO     | extracted standard info from prmon json
[2025-06-04 22:30:58] 2025-06-05 02:30:43,063 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:30:58] 2025-06-05 02:30:43,063 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:30:58] 2025-06-05 02:30:43,064 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:30:58] 2025-06-05 02:30:43,064 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:30:58] 2025-06-05 02:30:43,068 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:30:58] 2025-06-05 02:30:43,069 | INFO     | sum of square deviations: 1110539892.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,070 | INFO     | sum of deviations: 12437769581.999996
[2025-06-04 22:30:58] 2025-06-05 02:30:43,070 | INFO     | mean x: 1749085959.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,070 | INFO     | mean y: 2490276.1503267973
[2025-06-04 22:30:58] 2025-06-05 02:30:43,070 | INFO     | -- intersect: -19586835865.006874
[2025-06-04 22:30:58] 2025-06-05 02:30:43,070 | INFO     | intersect: -19586835865.006874
[2025-06-04 22:30:58] 2025-06-05 02:30:43,071 | INFO     | chi2: 1.5777968364702943
[2025-06-04 22:30:58] 2025-06-05 02:30:43,071 | INFO     | sum of square deviations: 1005179777.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,072 | INFO     | sum of deviations: 11947168298.000002
[2025-06-04 22:30:58] 2025-06-05 02:30:43,072 | INFO     | mean x: 1749085806.5
[2025-06-04 22:30:58] 2025-06-05 02:30:43,072 | INFO     | mean y: 2489565.810810811
[2025-06-04 22:30:58] 2025-06-05 02:30:43,073 | INFO     | -- intersect: -20786450856.63321
[2025-06-04 22:30:58] 2025-06-05 02:30:43,073 | INFO     | intersect: -20786450856.63321
[2025-06-04 22:30:58] 2025-06-05 02:30:43,073 | INFO     | chi2: 1.5794786751728882
[2025-06-04 22:30:58] 2025-06-05 02:30:43,073 | INFO     | current chi2=1.5794786751728882 (change=-0.10659412312907926 %)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,073 | INFO     | right removable region: 147
[2025-06-04 22:30:58] 2025-06-05 02:30:43,074 | INFO     | sum of square deviations: 1005179777.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,074 | INFO     | sum of deviations: -10228001149.999998
[2025-06-04 22:30:58] 2025-06-05 02:30:43,074 | INFO     | mean x: 1749086111.5
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | mean y: 2522573.054054054
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | -- intersect: 17799990418.32192
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | intersect: 17799990418.32192
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | chi2: 0.12000915639219388
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | current chi2=0.12000915639219388 (change=92.39387774026297 %)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,075 | INFO     | sum of square deviations: 906703512.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,076 | INFO     | sum of deviations: -9984975319.999998
[2025-06-04 22:30:58] 2025-06-05 02:30:43,076 | INFO     | mean x: 1749086264.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,076 | INFO     | mean y: 2522112.8251748253
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | -- intersect: 19264147271.93342
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | intersect: 19264147271.93342
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | chi2: 0.10324745171914064
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | current chi2=0.10324745171914064 (change=13.967021498155887 %)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | left removable region: 20
[2025-06-04 22:30:58] 2025-06-05 02:30:43,077 | INFO     | sum of square deviations: 635130048.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,078 | INFO     | sum of deviations: 261921861.00000006
[2025-06-04 22:30:58] 2025-06-05 02:30:43,078 | INFO     | mean x: 1749086386.0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,078 | INFO     | mean y: 2503759.244094488
[2025-06-04 22:30:58] 2025-06-05 02:30:43,078 | INFO     | -- intersect: -718803574.1335328
[2025-06-04 22:30:58] 2025-06-05 02:30:43,079 | INFO     | intersect: -718803574.1335328
[2025-06-04 22:30:58] 2025-06-05 02:30:43,079 | INFO     | chi2: 0.02646080739019724
[2025-06-04 22:30:58] 2025-06-05 02:30:43,079 | INFO     | -- intersect: -718803574.1335328
[2025-06-04 22:30:58] 2025-06-05 02:30:43,079 | INFO     | current memory leak: 0.41 B/s (using 127 data points, chi2=0.03)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | ..............................
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . Timing measurements:
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . get job = 0 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . initial setup = 3 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . payload setup = 12 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . stage-in = 0 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . payload execution = 9311 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,080 | INFO     | . stage-out = 0 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,081 | INFO     | . log creation = 0 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,081 | INFO     | ..............................
[2025-06-04 22:30:58] 2025-06-05 02:30:43,244 | INFO     | 
[2025-06-04 22:30:58] 2025-06-05 02:30:43,244 | INFO     | job summary report
[2025-06-04 22:30:58] 2025-06-05 02:30:43,244 | INFO     | --------------------------------------------------
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | PanDA job id: 6667366139
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | task id: 44871837
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | errors: (none)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | pilot state: finished 
[2025-06-04 22:30:58] 2025-06-05 02:30:43,245 | INFO     | transexitcode: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | exeerrorcode: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | exeerrordiag: 
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | exitcode: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | exitmsg: OK
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | cpuconsumptiontime: 69954 s
[2025-06-04 22:30:58] 2025-06-05 02:30:43,246 | INFO     | nevents: 400
[2025-06-04 22:30:58] 2025-06-05 02:30:43,247 | INFO     | neventsw: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,247 | INFO     | pid: 16081
[2025-06-04 22:30:58] 2025-06-05 02:30:43,247 | INFO     | pgrp: 16081
[2025-06-04 22:30:58] 2025-06-05 02:30:43,247 | INFO     | corecount: 8
[2025-06-04 22:30:58] 2025-06-05 02:30:43,247 | INFO     | event service: False
[2025-06-04 22:30:58] 2025-06-05 02:30:43,248 | INFO     | sizes: {0: 2397392, 6: 2397598, 11: 2397626, 9327: 2425774, 9329: 2434715, 9331: 2434771, 9337: 2435069}
[2025-06-04 22:30:58] 2025-06-05 02:30:43,248 | INFO     | --------------------------------------------------
[2025-06-04 22:30:58] 2025-06-05 02:30:43,248 | INFO     | 
[2025-06-04 22:30:58] 2025-06-05 02:30:43,248 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 22:30:58] 2025-06-05 02:30:43,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,279 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,279 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,279 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,279 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:30:58] 2025-06-05 02:30:43,282 | INFO     | job 6667366139 has completed (purged errors)
[2025-06-04 22:30:58] 2025-06-05 02:30:43,283 | INFO     | overall cleanup function is called
[2025-06-04 22:30:58] 2025-06-05 02:30:44,291 | INFO     | --- collectZombieJob: --- 10, [16081]
[2025-06-04 22:30:58] 2025-06-05 02:30:44,291 | INFO     | zombie collector waiting for pid 16081
[2025-06-04 22:30:58] 2025-06-05 02:30:44,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:30:58] 2025-06-05 02:30:44,292 | INFO     | collected zombie processes
[2025-06-04 22:30:58] 2025-06-05 02:30:44,292 | INFO     | will attempt to kill all subprocesses of pid=16081
[2025-06-04 22:30:58] 2025-06-05 02:30:44,391 | INFO     | process IDs to be killed: [16081] (in reverse order)
[2025-06-04 22:30:58] 2025-06-05 02:30:44,450 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:30:58] 2025-06-05 02:30:44,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:30:58] 2025-06-05 02:30:44,454 | INFO     | did not find any defunct processes belonging to 16081
[2025-06-04 22:30:58] 2025-06-05 02:30:44,456 | INFO     | did not find any defunct processes belonging to 16081
[2025-06-04 22:30:58] 2025-06-05 02:30:44,457 | INFO     | ready for new job
[2025-06-04 22:30:58] 2025-06-05 02:30:44,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:30:58] 2025-06-05 02:30:44,458 | INFO     | **************************************
[2025-06-04 22:30:58] 2025-06-05 02:30:44,459 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:30:58] 2025-06-05 02:30:44,459 | INFO     | **************************************
[2025-06-04 22:30:58] 2025-06-05 02:30:44,459 | INFO     | 
[2025-06-04 22:30:58] 2025-06-05 02:30:44,459 | INFO     | architecture information:
[2025-06-04 22:30:58] 2025-06-05 02:30:44,460 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:30:58] 2025-06-05 02:30:44,480 | INFO     | cat /etc/os-release:
[2025-06-04 22:30:58] NAME="CentOS Linux"
[2025-06-04 22:30:58] VERSION="7 (Core)"
[2025-06-04 22:30:58] ID="centos"
[2025-06-04 22:30:58] ID_LIKE="rhel fedora"
[2025-06-04 22:30:58] VERSION_ID="7"
[2025-06-04 22:30:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:30:58] ANSI_COLOR="0;31"
[2025-06-04 22:30:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:30:58] HOME_URL="https://www.centos.org/"
[2025-06-04 22:30:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:30:58] 
[2025-06-04 22:30:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:30:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:30:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:30:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:30:58] 
[2025-06-04 22:30:58] 2025-06-05 02:30:44,480 | INFO     | **************************************
[2025-06-04 22:30:58] 2025-06-05 02:30:44,983 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 22:30:58] 2025-06-05 02:30:45,004 | INFO     | sufficient remaining disk space (18599641088 B)
[2025-06-04 22:30:58] 2025-06-05 02:30:45,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:30:58] 2025-06-05 02:30:45,005 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:30:58] 2025-06-05 02:30:45,005 | INFO     | update_server=False
[2025-06-04 22:30:58] 2025-06-05 02:30:45,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:30:58] 2025-06-05 02:30:45,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:30:58] 2025-06-05 02:30:45,006 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 22:30:58] 2025-06-05 02:30:45,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:30:58] 2025-06-05 02:30:45,007 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:30:58] 2025-06-05 02:30:45,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:30:58] 2025-06-05 02:30:45,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:30:58] 2025-06-05 02:30:45,026 | INFO     | all payload control threads have been joined
[2025-06-04 22:30:58] 2025-06-05 02:30:45,279 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 22:30:58] 2025-06-05 02:30:45,279 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 22:30:58] 2025-06-05 02:30:45,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:30:58] 2025-06-05 02:30:45,279 | INFO     | will abort loop
[2025-06-04 22:30:58] 2025-06-05 02:30:45,717 | INFO     | all job control threads have been joined
[2025-06-04 22:30:58] 2025-06-05 02:30:46,007 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,011 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,017 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,023 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,031 | INFO     | [payload] control thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,043 | INFO     | all data control threads have been joined
[2025-06-04 22:30:58] 2025-06-05 02:30:46,284 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,723 | INFO     | [job] control thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,748 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:46,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,009 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,048 | INFO     | [data] control thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,332 | INFO     | [job] validate thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:30:58] 2025-06-05 02:30:47,357 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,360 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:47,364 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:51,361 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:30:58] 2025-06-05 02:30:53,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048290174784)>', '<ExcThread(monitor, started 140047256901376)>']
[2025-06-04 22:30:58] 2025-06-05 02:30:54,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:30:58] 2025-06-05 02:30:54,055 | INFO     | [monitor] control thread has ended
[2025-06-04 22:30:58] 2025-06-05 02:30:58,460 | INFO     | all workflow threads have been joined
[2025-06-04 22:30:58] 2025-06-05 02:30:58,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:30:58] 2025-06-05 02:30:58,460 | INFO     | traces error code: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:58,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:30:58] 2025-06-05 02:30:58,557 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:30:58] 2025-06-05 02:30:58,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:30:58] 2025-06-05 02:30:58,567 [wrapper] pilotpid: 9477
[2025-06-04 22:30:58] 2025-06-05 02:30:58,572 [wrapper] Pilot exit status: 0
[2025-06-04 22:30:58] 2025-06-05 02:30:58,590 [wrapper] pandaids: 6667366139
[2025-06-04 22:30:58] 2025-06-05 02:30:58,636 [wrapper] cleanup supervisor_pilot 17197 9478
[2025-06-04 22:30:58] 2025-06-05 02:30:58,641 [wrapper] Test setup, not cleaning
[2025-06-04 22:30:58] 2025-06-05 02:30:58,646 [wrapper] apfmon messages muted
[2025-06-04 22:30:58] 2025-06-05 02:30:58,651 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:30:58] 2025-06-05 02:30:58,655 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:30:58]  *** Error codes and diagnostics ***
[2025-06-04 22:30:58]     "exeErrorCode": 0,
[2025-06-04 22:30:58]     "exeErrorDiag": "",
[2025-06-04 22:30:58]     "pilotErrorCode": 0,
[2025-06-04 22:30:58]     "pilotErrorDiag": "",
[2025-06-04 22:30:58]  *** Listing of results directory ***
[2025-06-04 22:30:58] total 420412
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas    495897 May 27 13:43 pilot3.tar.gz
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas      5111 May 27 13:51 queuedata.json
[2025-06-04 22:30:58] -rwx------ 1 boincer umatlas     37140 May 27 13:53 runpilot2-wrapper.sh
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas       100 Jun  4 19:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:30:58] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 19:54 run_atlas
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas       105 Jun  4 19:54 job.xml
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas 227319115 Jun  4 19:54 EVNT.44871834._002799.pool.root.1
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:54 start_atlas.sh
[2025-06-04 22:30:58] drwxrwx--x 2 boincer umatlas      4096 Jun  4 19:54 shared
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 19:54 input.tar.gz
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas         0 Jun  4 19:54 boinc_lockfile
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 19:54 pandaJob.out
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas    987117 Jun  4 19:54 agis_schedconf.cvmfs.json
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas   1598969 Jun  4 19:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:30:58] drwx------ 4 boincer umatlas      4096 Jun  4 19:54 pilot3
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas      5824 Jun  4 22:20 init_data.xml
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas 196937179 Jun  4 22:29 HITS.44871837._071263.pool.root.1
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas        95 Jun  4 22:29 pilot_heartbeat.json
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas       529 Jun  4 22:30 boinc_task_state.xml
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas      1049 Jun  4 22:30 memory_monitor_summary.json
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 22:30 boinc_mmap_file
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas        27 Jun  4 22:30 wrapper_checkpoint.txt
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas    359444 Jun  4 22:30 log.44871837._071263.job.log.tgz.1
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas      7740 Jun  4 22:30 heartbeat.json
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas      4662 Jun  4 22:30 pilotlog.txt
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas    845103 Jun  4 22:30 log.44871837._071263.job.log.1
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas       357 Jun  4 22:30 output.list
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas       620 Jun  4 22:30 runtime_log
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas   1228800 Jun  4 22:30 result.tar.gz
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas       660 Jun  4 22:30 Yc7LDmRfDe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmK2ZKDmqtTIPo.diag
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 22:30 runtime_log.err
[2025-06-04 22:30:58] -rw-r--r-- 1 boincer umatlas     21146 Jun  4 22:30 stderr.txt
[2025-06-04 22:30:58] HITS file was successfully produced:
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas 196937179 Jun  4 22:29 shared/HITS.pool.root.1
[2025-06-04 22:30:58]  *** Contents of shared directory: ***
[2025-06-04 22:30:58] total 416040
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas 227319115 Jun  4 19:54 ATLAS.root_0
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:54 start_atlas.sh
[2025-06-04 22:30:58] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 19:54 input.tar.gz
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas 196937179 Jun  4 22:29 HITS.pool.root.1
[2025-06-04 22:30:58] -rw------- 1 boincer umatlas   1228800 Jun  4 22:30 result.tar.gz
22:31:00 (5801): run_atlas exited; CPU time 69898.664739
22:31:00 (5801): called boinc_finish(0)

</stderr_txt>
]]>

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