Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:27 (541184): wrapper (7.7.26015): starting
19:49:27 (541184): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:49:27] Arguments: --nthreads 8
[2025-06-04 19:49:27] Threads: 8
[2025-06-04 19:49:27] Checking for CVMFS
[2025-06-04 19:49:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:49:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:49:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:49:27] 2.12.6.0 2157222 23949 176716 146798 1 543 32977818 40960000 34646 16776704 0 305523217 99.785 166582730 36455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 19:49:27] CVMFS is ok
[2025-06-04 19:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:49:27] Further information can be found at the LHC@home message board.
[2025-06-04 19:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:49:27] Checking for apptainer binary...
[2025-06-04 19:49:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:49:27] Running /usr/bin/apptainer --version
[2025-06-04 19:49:27] apptainer version 1.4.1-1.el9
[2025-06-04 19:49:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:49:27] c8-6-10.aglt2.org
[2025-06-04 19:49:27] apptainer works
[2025-06-04 19:49:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:49:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:49:27] Starting ATLAS job with PandaID=6668047191
[2025-06-04 19:49:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:43:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:43:02]  lfn=log.44871837._079223.job.log.tgz.1
[2025-06-04 20:43:02]  mtime=0
[2025-06-04 20:43:02]  protocol_id=None
[2025-06-04 20:43:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 20:43:02]  replicas=None
[2025-06-04 20:43:02]  scope=mc23_13p6TeV
[2025-06-04 20:43:02]  status=None
[2025-06-04 20:43:02]  status_code=0
[2025-06-04 20:43:02]  storage_token=
[2025-06-04 20:43:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668047191/log.44871837._079223.job.log.tgz.1
[2025-06-04 20:43:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/84/log.44871837._079223.job.log.tgz.1
[2025-06-04 20:43:02]  workdir=None
[2025-06-04 20:43:02] ]
[2025-06-04 20:43:02] 2025-06-05 00:42:36,626 | INFO     | transferring file log.44871837._079223.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668047191/log.44871837._079223.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 20:43:02] 2025-06-05 00:42:36,626 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668047191/log.44871837._079223.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._079223.job
[2025-06-04 20:43:02] 2025-06-05 00:42:36,642 | INFO     | adding to output.list: log.44871837._079223.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/84/log.44871837._079223.job.log.tg
[2025-06-04 20:43:02] 2025-06-05 00:42:36,643 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 20:43:02] 2025-06-05 00:42:36,643 | INFO     | summary of transferred files:
[2025-06-04 20:43:02] 2025-06-05 00:42:36,643 | INFO     |  -- lfn=log.44871837._079223.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 20:43:02] 2025-06-05 00:42:36,643 | INFO     | stage-out finished correctly
[2025-06-04 20:43:02] 2025-06-05 00:42:38,020 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 20:43:02] 2025-06-05 00:42:39,307 | INFO     | job 6668047191 has state=finished
[2025-06-04 20:43:02] 2025-06-05 00:42:39,307 | INFO     | preparing for final server update for job 6668047191 in state='finished'
[2025-06-04 20:43:02] 2025-06-05 00:42:39,356 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 20:43:02] 2025-06-05 00:42:39,357 | INFO     | this job has now completed (state=finished)
[2025-06-04 20:43:02] 2025-06-05 00:42:39,357 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 20:43:02] 2025-06-05 00:42:39,357 | INFO     | log transfer has been attempted: DONE
[2025-06-04 20:43:02] 2025-06-05 00:42:39,357 | INFO     | job 6668047191 has finished - writing final server update
[2025-06-04 20:43:02] 2025-06-05 00:42:39,357 | INFO     | total number of processed events: 400 (read)
[2025-06-04 20:43:02] 2025-06-05 00:42:39,375 | INFO     | executing command: lscpu
[2025-06-04 20:43:02] 2025-06-05 00:42:39,460 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 20:43:02] 2025-06-05 00:42:39,878 | WARNING  | process 555987 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 20:43:02] 2025-06-05 00:42:39,878 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668047191/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:43:02] 2025-06-05 00:42:40,289 | INFO     | number of running child processes to parent process 555987: 1
[2025-06-04 20:43:02] 2025-06-05 00:42:40,290 | INFO     | maximum number of monitored processes: 6
[2025-06-04 20:43:02] 2025-06-05 00:42:42,792 | INFO     | monitor loop #234: job 0:6668047191 is in state 'finished'
[2025-06-04 20:43:02] 2025-06-05 00:42:42,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,005 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 20:43:02] 2025-06-05 00:42:43,005 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668047191/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,005 | INFO     | extracted standard info from prmon json
[2025-06-04 20:43:02] 2025-06-05 00:42:43,005 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:43:02] 2025-06-05 00:42:43,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:43:02] 2025-06-05 00:42:43,006 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:43:02] 2025-06-05 00:42:43,006 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:43:02] 2025-06-05 00:42:43,006 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | sum of deviations: -6278199056.000001
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | mean x: 1749082647.0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | mean y: 2729665.1333333333
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | -- intersect: 388818584954.3417
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | intersect: 388818584954.3417
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | chi2: 0.0757877438396802
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | -- intersect: 388818584954.3417
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | current memory leak: -222.30 B/s (using 45 data points, chi2=0.08)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | ..............................
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | . Timing measurements:
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | . get job = 0 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | . initial setup = 2 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | . payload setup = 5 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,007 | INFO     | . stage-in = 0 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,008 | INFO     | . payload execution = 3155 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,008 | INFO     | . stage-out = 0 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,008 | INFO     | . log creation = 0 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,008 | INFO     | ..............................
[2025-06-04 20:43:02] 2025-06-05 00:42:43,061 | INFO     | 
[2025-06-04 20:43:02] 2025-06-05 00:42:43,061 | INFO     | job summary report
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | --------------------------------------------------
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | PanDA job id: 6668047191
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | task id: 44871837
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | errors: (none)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | pilot state: finished 
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | transexitcode: 0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | exeerrorcode: 0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | exeerrordiag: 
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | exitcode: 0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | exitmsg: OK
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | cpuconsumptiontime: 23614 s
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | nevents: 400
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | neventsw: 0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | pid: 555987
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | pgrp: 555987
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | corecount: 8
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | event service: False
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 3165: 2422910, 3166: 2431851, 3167: 2431907, 3172: 2432205}
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | --------------------------------------------------
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | 
[2025-06-04 20:43:02] 2025-06-05 00:42:43,062 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 20:43:02] 2025-06-05 00:42:43,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | job 6668047191 has completed (purged errors)
[2025-06-04 20:43:02] 2025-06-05 00:42:43,080 | INFO     | overall cleanup function is called
[2025-06-04 20:43:02] 2025-06-05 00:42:44,088 | INFO     | --- collectZombieJob: --- 10, [555987]
[2025-06-04 20:43:02] 2025-06-05 00:42:44,088 | INFO     | zombie collector waiting for pid 555987
[2025-06-04 20:43:02] 2025-06-05 00:42:44,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:43:02] 2025-06-05 00:42:44,088 | INFO     | collected zombie processes
[2025-06-04 20:43:02] 2025-06-05 00:42:44,088 | INFO     | will attempt to kill all subprocesses of pid=555987
[2025-06-04 20:43:02] 2025-06-05 00:42:44,436 | INFO     | process IDs to be killed: [555987] (in reverse order)
[2025-06-04 20:43:02] 2025-06-05 00:42:44,581 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:43:02] 2025-06-05 00:42:44,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:43:02] 2025-06-05 00:42:44,602 | INFO     | did not find any defunct processes belonging to 555987
[2025-06-04 20:43:02] 2025-06-05 00:42:44,622 | INFO     | did not find any defunct processes belonging to 555987
[2025-06-04 20:43:02] 2025-06-05 00:42:44,622 | INFO     | ready for new job
[2025-06-04 20:43:02] 2025-06-05 00:42:44,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:43:02] 2025-06-05 00:42:44,623 | INFO     | **************************************
[2025-06-04 20:43:02] 2025-06-05 00:42:44,623 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:43:02] 2025-06-05 00:42:44,623 | INFO     | **************************************
[2025-06-04 20:43:02] 2025-06-05 00:42:44,623 | INFO     | 
[2025-06-04 20:43:02] 2025-06-05 00:42:44,640 | INFO     | architecture information:
[2025-06-04 20:43:02] 2025-06-05 00:42:44,640 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:43:02] 2025-06-05 00:42:44,653 | INFO     | cat /etc/os-release:
[2025-06-04 20:43:02] NAME="CentOS Linux"
[2025-06-04 20:43:02] VERSION="7 (Core)"
[2025-06-04 20:43:02] ID="centos"
[2025-06-04 20:43:02] ID_LIKE="rhel fedora"
[2025-06-04 20:43:02] VERSION_ID="7"
[2025-06-04 20:43:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:43:02] ANSI_COLOR="0;31"
[2025-06-04 20:43:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:43:02] HOME_URL="https://www.centos.org/"
[2025-06-04 20:43:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:43:02] 
[2025-06-04 20:43:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:43:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:43:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:43:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:43:02] 
[2025-06-04 20:43:02] 2025-06-05 00:42:44,654 | INFO     | **************************************
[2025-06-04 20:43:02] 2025-06-05 00:42:45,156 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 20:43:02] 2025-06-05 00:42:45,169 | INFO     | sufficient remaining disk space (173735411712 B)
[2025-06-04 20:43:02] 2025-06-05 00:42:45,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | INFO     | update_server=False
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:43:02] 2025-06-05 00:42:45,170 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:43:02] 2025-06-05 00:42:45,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:43:02] 2025-06-05 00:42:45,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:43:02] 2025-06-05 00:42:45,295 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 20:43:02] 2025-06-05 00:42:45,296 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 20:43:02] 2025-06-05 00:42:45,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:43:02] 2025-06-05 00:42:45,296 | INFO     | will abort loop
[2025-06-04 20:43:02] 2025-06-05 00:42:45,344 | INFO     | all job control threads have been joined
[2025-06-04 20:43:02] 2025-06-05 00:42:46,007 | INFO     | all payload control threads have been joined
[2025-06-04 20:43:02] 2025-06-05 00:42:46,121 | INFO     | all data control threads have been joined
[2025-06-04 20:43:02] 2025-06-05 00:42:46,174 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:46,237 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:46,301 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:46,350 | INFO     | [job] control thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:46,394 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:46,400 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,012 | INFO     | [payload] control thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,062 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,108 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,126 | INFO     | [data] control thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,175 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,442 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:47,511 | INFO     | [job] validate thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:48,073 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:43:02] 2025-06-05 00:42:48,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:43:02] 2025-06-05 00:42:49,078 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:52,567 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:55,468 | INFO     | job.realtimelogging is not enabled
[2025-06-04 20:43:02] 2025-06-05 00:42:56,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:43:02] 2025-06-05 00:42:56,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734631937856)>', '<ExcThread(monitor, started 139733866899200)>']
[2025-06-04 20:43:02] 2025-06-05 00:42:57,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:43:02] 2025-06-05 00:42:57,230 | INFO     | [monitor] control thread has ended
[2025-06-04 20:43:02] 2025-06-05 00:43:01,849 | INFO     | all workflow threads have been joined
[2025-06-04 20:43:02] 2025-06-05 00:43:01,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:43:02] 2025-06-05 00:43:01,849 | INFO     | traces error code: 0
[2025-06-04 20:43:02] 2025-06-05 00:43:01,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:43:02] 2025-06-05 00:43:01,978 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:43:02] 2025-06-05 00:43:01,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:43:02] 2025-06-05 00:43:01,982 [wrapper] pilotpid: 545042
[2025-06-04 20:43:02] 2025-06-05 00:43:01,984 [wrapper] Pilot exit status: 0
[2025-06-04 20:43:02] 2025-06-05 00:43:01,991 [wrapper] pandaids: 6668047191
[2025-06-04 20:43:02] 2025-06-05 00:43:02,106 [wrapper] cleanup supervisor_pilot 1341100 545043
[2025-06-04 20:43:02] 2025-06-05 00:43:02,109 [wrapper] Test setup, not cleaning
[2025-06-04 20:43:02] 2025-06-05 00:43:02,111 [wrapper] apfmon messages muted
[2025-06-04 20:43:02] 2025-06-05 00:43:02,114 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:43:02] 2025-06-05 00:43:02,116 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:43:02]  *** Error codes and diagnostics ***
[2025-06-04 20:43:02]     "exeErrorCode": 0,
[2025-06-04 20:43:02]     "exeErrorDiag": "",
[2025-06-04 20:43:02]     "pilotErrorCode": 0,
[2025-06-04 20:43:02]     "pilotErrorDiag": "",
[2025-06-04 20:43:02]  *** Listing of results directory ***
[2025-06-04 20:43:02] total 412192
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas    495897 May 28 00:31 pilot3.tar.gz
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas      5111 May 28 01:25 queuedata.json
[2025-06-04 20:43:02] -rwx------. 1 boincer umatlas     37140 May 28 01:29 runpilot2-wrapper.sh
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas       100 Jun  4 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:43:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 19:49 run_atlas
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas       105 Jun  4 19:49 job.xml
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas 225943587 Jun  4 19:49 EVNT.44871834._003096.pool.root.1
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:49 start_atlas.sh
[2025-06-04 20:43:02] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 19:49 shared
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 19:49 input.tar.gz
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas         0 Jun  4 19:49 boinc_lockfile
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 19:49 pandaJob.out
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas    987117 Jun  4 19:49 agis_schedconf.cvmfs.json
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas   1598969 Jun  4 19:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:43:02] drwx------. 4 boincer umatlas      4096 Jun  4 19:49 pilot3
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas      7160 Jun  4 20:37 init_data.xml
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas 191055293 Jun  4 20:42 HITS.44871837._079223.pool.root.1
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas       529 Jun  4 20:42 boinc_task_state.xml
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas      1035 Jun  4 20:42 memory_monitor_summary.json
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas    302778 Jun  4 20:42 log.44871837._079223.job.log.tgz.1
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas      7697 Jun  4 20:42 heartbeat.json
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas        95 Jun  4 20:42 pilot_heartbeat.json
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 20:42 boinc_mmap_file
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas        27 Jun  4 20:42 wrapper_checkpoint.txt
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas      4735 Jun  4 20:43 pilotlog.txt
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas    328099 Jun  4 20:43 log.44871837._079223.job.log.1
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas       357 Jun  4 20:43 output.list
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas       620 Jun  4 20:43 runtime_log
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas    645120 Jun  4 20:43 result.tar.gz
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 20:43 runtime_log.err
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas       652 Jun  4 20:43 bIjKDmfXOe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlySKDmXTwFBo.diag
[2025-06-04 20:43:02] -rw-r--r--. 1 boincer umatlas     21557 Jun  4 20:43 stderr.txt
[2025-06-04 20:43:02] HITS file was successfully produced:
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas 191055293 Jun  4 20:42 shared/HITS.pool.root.1
[2025-06-04 20:43:02]  *** Contents of shared directory: ***
[2025-06-04 20:43:02] total 408380
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas 225943587 Jun  4 19:49 ATLAS.root_0
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:49 start_atlas.sh
[2025-06-04 20:43:02] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 19:49 input.tar.gz
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas 191055293 Jun  4 20:42 HITS.pool.root.1
[2025-06-04 20:43:02] -rw-------. 1 boincer umatlas    645120 Jun  4 20:43 result.tar.gz
20:43:03 (541184): run_atlas exited; CPU time 23689.945815
20:43:03 (541184): called boinc_finish(0)

</stderr_txt>
]]>

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