Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:40:08 (5212): wrapper (7.7.26015): starting
19:40:08 (5212): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:40:08] Arguments: --nthreads 8
[2025-06-04 19:40:08] Threads: 8
[2025-06-04 19:40:08] Checking for CVMFS
[2025-06-04 19:40:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:40:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:40:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:40:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:40:09] 2.12.6.0 4471 37985 550548 146798 2 338 26398536 32935936 13789 16776704 0 158505541 99.573 187063725 28008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 19:40:09] CVMFS is ok
[2025-06-04 19:40:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:40:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:40:09] Further information can be found at the LHC@home message board.
[2025-06-04 19:40:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:40:09] Checking for apptainer binary...
[2025-06-04 19:40:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:40:09] Running /usr/bin/apptainer --version
[2025-06-04 19:40:09] apptainer version 1.4.1-1.el9
[2025-06-04 19:40:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:40:09] c7-11-13.aglt2.org
[2025-06-04 19:40:09] apptainer works
[2025-06-04 19:40:09] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:40:09] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:40:09] Starting ATLAS job with PandaID=6667307720
[2025-06-04 19:40:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:08:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:08:16]  filetype=log
[2025-06-04 21:08:16]  guid=db81a3a1-cfa9-48c7-967e-fa2cd00826c0
[2025-06-04 21:08:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 21:08:16]  is_altstaged=None
[2025-06-04 21:08:16]  is_tar=False
[2025-06-04 21:08:16]  lfn=log.44871837._070636.job.log.tgz.1
[2025-06-04 21:08:16]  mtime=0
[2025-06-04 21:08:16]  protocol_id=None
[2025-06-04 21:08:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 21:08:16]  replicas=None
[2025-06-04 21:08:16]  scope=mc23_13p6TeV
[2025-06-04 21:08:16]  status=None
[2025-06-04 21:08:16]  status_code=0
[2025-06-04 21:08:16]  storage_token=
[2025-06-04 21:08:16]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6667307720/log.44871837._070636.job.log.tgz.1
[2025-06-04 21:08:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/33/log.44871837._070636.job.log.tgz.1
[2025-06-04 21:08:16]  workdir=None
[2025-06-04 21:08:16] ]
[2025-06-04 21:08:16] 2025-06-05 01:07:59,978 | INFO     | transferring file log.44871837._070636.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6667307720/log.44871837._070636.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 21:08:16] 2025-06-05 01:07:59,979 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6667307720/log.44871837._070636.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._070636.job
[2025-06-04 21:08:16] 2025-06-05 01:07:59,997 | INFO     | adding to output.list: log.44871837._070636.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/33/log.44871837._070636.job.log.tg
[2025-06-04 21:08:16] 2025-06-05 01:07:59,997 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 21:08:16] 2025-06-05 01:07:59,998 | INFO     | summary of transferred files:
[2025-06-04 21:08:16] 2025-06-05 01:07:59,998 | INFO     |  -- lfn=log.44871837._070636.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 21:08:16] 2025-06-05 01:07:59,998 | INFO     | stage-out finished correctly
[2025-06-04 21:08:16] 2025-06-05 01:08:00,214 | INFO     | monitor loop #388: job 0:6667307720 is in state 'finished'
[2025-06-04 21:08:16] 2025-06-05 01:08:00,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:08:16] 2025-06-05 01:08:00,272 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 21:08:16] 2025-06-05 01:08:00,360 | INFO     | job 6667307720 has state=finished
[2025-06-04 21:08:16] 2025-06-05 01:08:00,361 | INFO     | preparing for final server update for job 6667307720 in state='finished'
[2025-06-04 21:08:16] 2025-06-05 01:08:00,361 | INFO     | this job has now completed (state=finished)
[2025-06-04 21:08:16] 2025-06-05 01:08:00,361 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 21:08:16] 2025-06-05 01:08:00,361 | INFO     | log transfer has been attempted: DONE
[2025-06-04 21:08:16] 2025-06-05 01:08:00,361 | INFO     | job 6667307720 has finished - writing final server update
[2025-06-04 21:08:16] 2025-06-05 01:08:00,362 | INFO     | total number of processed events: 400 (read)
[2025-06-04 21:08:16] 2025-06-05 01:08:00,379 | INFO     | executing command: lscpu
[2025-06-04 21:08:16] 2025-06-05 01:08:00,448 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 21:08:16] 2025-06-05 01:08:02,718 | INFO     | monitor loop #389: job 0:6667307720 is in state 'finished'
[2025-06-04 21:08:16] 2025-06-05 01:08:02,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 21:08:16] 2025-06-05 01:08:04,006 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6667307720/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,007 | INFO     | extracted standard info from prmon json
[2025-06-04 21:08:16] 2025-06-05 01:08:04,007 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:08:16] 2025-06-05 01:08:04,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:08:16] 2025-06-05 01:08:04,007 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:08:16] 2025-06-05 01:08:04,007 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:08:16] 2025-06-05 01:08:04,009 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:08:16] 2025-06-05 01:08:04,009 | INFO     | sum of square deviations: 152858680.0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,009 | INFO     | sum of deviations: -7020534286.0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,009 | INFO     | mean x: 1749083133.0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | mean y: 2274760.0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | -- intersect: 80334632100.066
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | intersect: 80334632100.066
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | chi2: 0.07378420734365188
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | -- intersect: 80334632100.066
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | current memory leak: -45.93 B/s (using 79 data points, chi2=0.07)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | ..............................
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | . Timing measurements:
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | . get job = 0 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | . initial setup = 2 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,010 | INFO     | . payload setup = 7 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,011 | INFO     | . stage-in = 0 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,011 | INFO     | . payload execution = 5230 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,011 | INFO     | . stage-out = 0 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,011 | INFO     | . log creation = 0 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,011 | INFO     | ..............................
[2025-06-04 21:08:16] 2025-06-05 01:08:04,077 | INFO     | 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,077 | INFO     | job summary report
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | --------------------------------------------------
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | PanDA job id: 6667307720
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | task id: 44871837
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | errors: (none)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | pilot state: finished 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | transexitcode: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | exeerrorcode: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | exeerrordiag: 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | exitcode: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | exitmsg: OK
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | cpuconsumptiontime: 38800 s
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | nevents: 400
[2025-06-04 21:08:16] 2025-06-05 01:08:04,078 | INFO     | neventsw: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | pid: 15201
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | pgrp: 15201
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | corecount: 8
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | event service: False
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | sizes: {0: 2397392, 5: 2397598, 11: 2397654, 5241: 2423887, 5242: 2423886, 5243: 2433067, 5247: 2433181}
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | --------------------------------------------------
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 21:08:16] 2025-06-05 01:08:04,100 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,100 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,100 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,100 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | job 6667307720 has completed (purged errors)
[2025-06-04 21:08:16] 2025-06-05 01:08:04,102 | INFO     | overall cleanup function is called
[2025-06-04 21:08:16] 2025-06-05 01:08:04,584 | INFO     | PID=8803 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 21:08:16] 2025-06-05 01:08:04,584 | INFO     | .. there are 22 such processes running
[2025-06-04 21:08:16] 2025-06-05 01:08:05,111 | INFO     | --- collectZombieJob: --- 10, [15201]
[2025-06-04 21:08:16] 2025-06-05 01:08:05,111 | INFO     | zombie collector waiting for pid 15201
[2025-06-04 21:08:16] 2025-06-05 01:08:05,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:08:16] 2025-06-05 01:08:05,111 | INFO     | collected zombie processes
[2025-06-04 21:08:16] 2025-06-05 01:08:05,111 | INFO     | will attempt to kill all subprocesses of pid=15201
[2025-06-04 21:08:16] 2025-06-05 01:08:05,355 | INFO     | process IDs to be killed: [15201] (in reverse order)
[2025-06-04 21:08:16] 2025-06-05 01:08:05,446 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:08:16] 2025-06-05 01:08:05,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:08:16] 2025-06-05 01:08:05,459 | INFO     | did not find any defunct processes belonging to 15201
[2025-06-04 21:08:16] 2025-06-05 01:08:05,470 | INFO     | did not find any defunct processes belonging to 15201
[2025-06-04 21:08:16] 2025-06-05 01:08:05,470 | INFO     | ready for new job
[2025-06-04 21:08:16] 2025-06-05 01:08:05,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:08:16] 2025-06-05 01:08:05,473 | INFO     | **************************************
[2025-06-04 21:08:16] 2025-06-05 01:08:05,473 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:08:16] 2025-06-05 01:08:05,473 | INFO     | **************************************
[2025-06-04 21:08:16] 2025-06-05 01:08:05,473 | INFO     | 
[2025-06-04 21:08:16] 2025-06-05 01:08:05,487 | INFO     | architecture information:
[2025-06-04 21:08:16] 2025-06-05 01:08:05,488 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:08:16] 2025-06-05 01:08:05,499 | INFO     | cat /etc/os-release:
[2025-06-04 21:08:16] NAME="CentOS Linux"
[2025-06-04 21:08:16] VERSION="7 (Core)"
[2025-06-04 21:08:16] ID="centos"
[2025-06-04 21:08:16] ID_LIKE="rhel fedora"
[2025-06-04 21:08:16] VERSION_ID="7"
[2025-06-04 21:08:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:08:16] ANSI_COLOR="0;31"
[2025-06-04 21:08:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:08:16] HOME_URL="https://www.centos.org/"
[2025-06-04 21:08:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:08:16] 
[2025-06-04 21:08:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:08:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:08:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:08:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:08:16] 
[2025-06-04 21:08:16] 2025-06-05 01:08:05,499 | INFO     | **************************************
[2025-06-04 21:08:16] 2025-06-05 01:08:06,002 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 21:08:16] 2025-06-05 01:08:06,018 | INFO     | sufficient remaining disk space (96665075712 B)
[2025-06-04 21:08:16] 2025-06-05 01:08:06,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:08:16] 2025-06-05 01:08:06,019 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:08:16] 2025-06-05 01:08:06,019 | INFO     | update_server=False
[2025-06-04 21:08:16] 2025-06-05 01:08:06,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:08:16] 2025-06-05 01:08:06,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:08:16] 2025-06-05 01:08:06,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:08:16] 2025-06-05 01:08:06,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:08:16] 2025-06-05 01:08:06,226 | INFO     | aborting loop
[2025-06-04 21:08:16] 2025-06-05 01:08:06,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:08:16] 2025-06-05 01:08:06,590 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:08:16] 2025-06-05 01:08:06,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:08:16] 2025-06-05 01:08:06,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:08:16] 2025-06-05 01:08:06,824 | INFO     | all data control threads have been joined
[2025-06-04 21:08:16] 2025-06-05 01:08:06,952 | INFO     | all payload control threads have been joined
[2025-06-04 21:08:16] 2025-06-05 01:08:07,024 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,026 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,224 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,231 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,398 | INFO     | [job] validate thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,441 | INFO     | all job control threads have been joined
[2025-06-04 21:08:16] 2025-06-05 01:08:07,646 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,689 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,758 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,829 | INFO     | [data] control thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:07,955 | INFO     | [payload] control thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:08,025 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:08,156 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:08,239 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:08,446 | INFO     | [job] control thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:10,354 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:08:16] 2025-06-05 01:08:11,168 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939790419776)>', '<ExcThread(monitor, started 139938993518336)>']
[2025-06-04 21:08:16] 2025-06-05 01:08:11,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:08:16] 2025-06-05 01:08:11,616 | INFO     | [monitor] control thread has ended
[2025-06-04 21:08:16] 2025-06-05 01:08:16,177 | INFO     | all workflow threads have been joined
[2025-06-04 21:08:16] 2025-06-05 01:08:16,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:08:16] 2025-06-05 01:08:16,178 | INFO     | traces error code: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:16,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:08:16] 2025-06-05 01:08:16,267 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:08:16] 2025-06-05 01:08:16,271 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:08:16] 2025-06-05 01:08:16,273 [wrapper] pilotpid: 8803
[2025-06-04 21:08:16] 2025-06-05 01:08:16,275 [wrapper] Pilot exit status: 0
[2025-06-04 21:08:16] 2025-06-05 01:08:16,284 [wrapper] pandaids: 6667307720
[2025-06-04 21:08:16] 2025-06-05 01:08:16,350 [wrapper] cleanup supervisor_pilot  282694 8804
[2025-06-04 21:08:16] 2025-06-05 01:08:16,352 [wrapper] Test setup, not cleaning
[2025-06-04 21:08:16] 2025-06-05 01:08:16,355 [wrapper] apfmon messages muted
[2025-06-04 21:08:16] 2025-06-05 01:08:16,357 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:08:16] 2025-06-05 01:08:16,359 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:08:16]  *** Error codes and diagnostics ***
[2025-06-04 21:08:16]     "exeErrorCode": 0,
[2025-06-04 21:08:16]     "exeErrorDiag": "",
[2025-06-04 21:08:16]     "pilotErrorCode": 0,
[2025-06-04 21:08:16]     "pilotErrorDiag": "",
[2025-06-04 21:08:16]  *** Listing of results directory ***
[2025-06-04 21:08:16] total 420000
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas    495897 May 27 12:39 pilot3.tar.gz
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas      5111 May 27 13:05 queuedata.json
[2025-06-04 21:08:16] -rwx------. 1 boincer umatlas     37140 May 27 13:08 runpilot2-wrapper.sh
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas       100 Jun  4 19:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:08:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 19:40 run_atlas
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas       105 Jun  4 19:40 job.xml
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas 224047635 Jun  4 19:40 EVNT.44871834._002776.pool.root.1
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:40 start_atlas.sh
[2025-06-04 21:08:16] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 19:40 shared
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 19:40 input.tar.gz
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas         0 Jun  4 19:40 boinc_lockfile
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 19:40 pandaJob.out
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas    987117 Jun  4 19:40 agis_schedconf.cvmfs.json
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas   1598969 Jun  4 19:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:08:16] drwx------. 4 boincer umatlas      4096 Jun  4 19:40 pilot3
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas      6897 Jun  4 21:03 init_data.xml
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas        95 Jun  4 21:07 pilot_heartbeat.json
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas 200536151 Jun  4 21:07 HITS.44871837._070636.pool.root.1
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas       529 Jun  4 21:07 boinc_task_state.xml
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas      1030 Jun  4 21:07 memory_monitor_summary.json
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas    322921 Jun  4 21:07 log.44871837._070636.job.log.tgz.1
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas      7691 Jun  4 21:08 heartbeat.json
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 21:08 boinc_mmap_file
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas        27 Jun  4 21:08 wrapper_checkpoint.txt
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas      4353 Jun  4 21:08 pilotlog.txt
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas    509140 Jun  4 21:08 log.44871837._070636.job.log.1
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas       357 Jun  4 21:08 output.list
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas       620 Jun  4 21:08 runtime_log
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas    849920 Jun  4 21:08 result.tar.gz
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 21:08 runtime_log.err
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas       651 Jun  4 21:08 cK2NDmKyCe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmz8RKDmiehRkm.diag
[2025-06-04 21:08:16] -rw-r--r--. 1 boincer umatlas     21243 Jun  4 21:08 stderr.txt
[2025-06-04 21:08:16] HITS file was successfully produced:
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas 200536151 Jun  4 21:07 shared/HITS.pool.root.1
[2025-06-04 21:08:16]  *** Contents of shared directory: ***
[2025-06-04 21:08:16] total 415992
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas 224047635 Jun  4 19:40 ATLAS.root_0
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:40 start_atlas.sh
[2025-06-04 21:08:16] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 19:40 input.tar.gz
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas 200536151 Jun  4 21:07 HITS.pool.root.1
[2025-06-04 21:08:16] -rw-------. 1 boincer umatlas    849920 Jun  4 21:08 result.tar.gz
21:08:17 (5212): run_atlas exited; CPU time 38825.787154
21:08:17 (5212): called boinc_finish(0)

</stderr_txt>
]]>

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