Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:38:10 (32997): wrapper (7.7.26015): starting
19:38:10 (32997): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:38:10] Arguments: --nthreads 8
[2025-06-04 19:38:10] Threads: 8
[2025-06-04 19:38:10] Checking for CVMFS
[2025-06-04 19:38:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:38:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:38:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:38:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:38:10] 2.11.2.0 5089 29452 290744 146798 1 343 17638018 18432001 11730 130560 0 106085704 99.523 99240266 34501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 19:38:10] CVMFS is ok
[2025-06-04 19:38:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:38:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:38:10] Further information can be found at the LHC@home message board.
[2025-06-04 19:38:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:38:10] Checking for apptainer binary...
[2025-06-04 19:38:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:38:10] Running /usr/bin/apptainer --version
[2025-06-04 19:38:10] apptainer version 1.3.2-1.el7
[2025-06-04 19:38:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:38:11] c-211-40.aglt2.org
[2025-06-04 19:38:11] apptainer works
[2025-06-04 19:38:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:38:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:38:11] Starting ATLAS job with PandaID=6667667680
[2025-06-04 19:38:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:59:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:59:02] 2025-06-05 02:58:43,730 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6667667680/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,730 | INFO     | extracted standard info from prmon json
[2025-06-04 22:59:02] 2025-06-05 02:58:43,730 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:59:02] 2025-06-05 02:58:43,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:59:02] 2025-06-05 02:58:43,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:59:02] 2025-06-05 02:58:43,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:59:02] 2025-06-05 02:58:43,737 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:59:02] 2025-06-05 02:58:43,737 | INFO     | sum of square deviations: 2334733914.7091713
[2025-06-04 22:59:02] 2025-06-05 02:58:43,745 | INFO     | sum of deviations: 4335926058.367348
[2025-06-04 22:59:02] 2025-06-05 02:58:43,745 | INFO     | mean x: 1749086277.6479592
[2025-06-04 22:59:02] 2025-06-05 02:58:43,745 | INFO     | mean y: 2478530.9183673467
[2025-06-04 22:59:02] 2025-06-05 02:58:43,745 | INFO     | -- intersect: -3245818297.172739
[2025-06-04 22:59:02] 2025-06-05 02:58:43,745 | INFO     | intersect: -3245818297.172739
[2025-06-04 22:59:02] 2025-06-05 02:58:43,746 | INFO     | chi2: 1.962197065049307
[2025-06-04 22:59:02] 2025-06-05 02:58:43,746 | INFO     | sum of square deviations: 2160581354.59687
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | sum of deviations: 16944386891.821981
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | mean x: 1749086125.1518323
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | mean y: 2489337.9371727747
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | -- intersect: -13714740956.878658
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | intersect: -13714740956.878658
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | chi2: 1.1886882848998823
[2025-06-04 22:59:02] 2025-06-05 02:58:43,747 | INFO     | current chi2=1.1886882848998823 (change=39.42054515966711 %)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,748 | INFO     | sum of square deviations: 1995312681.9784887
[2025-06-04 22:59:02] 2025-06-05 02:58:43,757 | INFO     | sum of deviations: 16455148693.15053
[2025-06-04 22:59:02] 2025-06-05 02:58:43,757 | INFO     | mean x: 1749085972.655914
[2025-06-04 22:59:02] 2025-06-05 02:58:43,757 | INFO     | mean y: 2488886.4086021506
[2025-06-04 22:59:02] 2025-06-05 02:58:43,757 | INFO     | -- intersect: -14422052197.858
[2025-06-04 22:59:02] 2025-06-05 02:58:43,757 | INFO     | intersect: -14422052197.858
[2025-06-04 22:59:02] 2025-06-05 02:58:43,758 | INFO     | chi2: 1.1894113569982667
[2025-06-04 22:59:02] 2025-06-05 02:58:43,758 | INFO     | current chi2=1.1894113569982667 (change=-0.060829412350547736 %)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,758 | INFO     | right removable region: 185
[2025-06-04 22:59:02] 2025-06-05 02:58:43,758 | INFO     | sum of square deviations: 2160563664.59687
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | sum of deviations: -20631425980.256554
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | mean x: 1749086430.1518323
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | mean y: 2500137.7329842933
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | -- intersect: 16704691240.943018
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | intersect: 16704691240.943018
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | chi2: 0.8092580223604622
[2025-06-04 22:59:02] 2025-06-05 02:58:43,759 | INFO     | current chi2=0.8092580223604622 (change=58.75755617134578 %)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,760 | INFO     | sum of square deviations: 1995288830.284946
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | sum of deviations: -20159992062.91937
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | mean x: 1749086582.6505377
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | mean y: 2499694.693548387
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | -- intersect: 17674914378.916443
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | intersect: 17674914378.916443
[2025-06-04 22:59:02] 2025-06-05 02:58:43,773 | INFO     | chi2: 0.8090172542529941
[2025-06-04 22:59:02] 2025-06-05 02:58:43,774 | INFO     | current chi2=0.8090172542529941 (change=0.029751710927228676 %)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,774 | INFO     | left removable region: 20
[2025-06-04 22:59:02] 2025-06-05 02:58:43,774 | INFO     | sum of square deviations: 1392888545.2484791
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | sum of deviations: -4404502012.109091
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | mean x: 1749086552.169697
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | mean y: 2508464.2181818183
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | -- intersect: 5533356761.208148
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | intersect: 5533356761.208148
[2025-06-04 22:59:02] 2025-06-05 02:58:43,775 | INFO     | chi2: 0.014728330787352561
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | -- intersect: 5533356761.208148
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | current memory leak: -3.16 B/s (using 165 data points, chi2=0.01)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | ..............................
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | . Timing measurements:
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | . get job = 0 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | . initial setup = 2 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | . payload setup = 5 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,776 | INFO     | . stage-in = 0 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,777 | INFO     | . payload execution = 11926 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,777 | INFO     | . stage-out = 4 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,777 | INFO     | . log creation = 0 s
[2025-06-04 22:59:02] 2025-06-05 02:58:43,777 | INFO     | ..............................
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | 
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | job summary report
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | --------------------------------------------------
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | PanDA job id: 6667667680
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | task id: 44871837
[2025-06-04 22:59:02] 2025-06-05 02:58:43,997 | INFO     | errors: (none)
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | pilot state: finished 
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | transexitcode: 0
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | exeerrorcode: 0
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | exeerrordiag: 
[2025-06-04 22:59:02] 2025-06-05 02:58:43,998 | INFO     | exitcode: 0
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | exitmsg: OK
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | cpuconsumptiontime: 41583 s
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | nevents: 400
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | neventsw: 0
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | pid: 65020
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | pgrp: 65020
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | corecount: 8
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | event service: False
[2025-06-04 22:59:02] 2025-06-05 02:58:44,000 | INFO     | sizes: {0: 2397392, 5: 2397598, 11: 2397654, 11937: 2426922, 11942: 2435863, 11943: 2435947, 12006: 2436245}
[2025-06-04 22:59:02] 2025-06-05 02:58:44,001 | INFO     | --------------------------------------------------
[2025-06-04 22:59:02] 2025-06-05 02:58:44,001 | INFO     | 
[2025-06-04 22:59:02] 2025-06-05 02:58:44,001 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 22:59:02] 2025-06-05 02:58:44,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | job 6667667680 has completed (purged errors)
[2025-06-04 22:59:02] 2025-06-05 02:58:44,362 | INFO     | overall cleanup function is called
[2025-06-04 22:59:02] 2025-06-05 02:58:45,385 | INFO     | --- collectZombieJob: --- 10, [65020]
[2025-06-04 22:59:02] 2025-06-05 02:58:45,385 | INFO     | zombie collector waiting for pid 65020
[2025-06-04 22:59:02] 2025-06-05 02:58:45,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:59:02] 2025-06-05 02:58:45,385 | INFO     | collected zombie processes
[2025-06-04 22:59:02] 2025-06-05 02:58:45,385 | INFO     | will attempt to kill all subprocesses of pid=65020
[2025-06-04 22:59:02] 2025-06-05 02:58:45,938 | INFO     | process IDs to be killed: [65020] (in reverse order)
[2025-06-04 22:59:02] 2025-06-05 02:58:46,525 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:59:02] 2025-06-05 02:58:46,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:59:02] 2025-06-05 02:58:46,532 | INFO     | did not find any defunct processes belonging to 65020
[2025-06-04 22:59:02] 2025-06-05 02:58:46,538 | INFO     | did not find any defunct processes belonging to 65020
[2025-06-04 22:59:02] 2025-06-05 02:58:46,538 | INFO     | ready for new job
[2025-06-04 22:59:02] 2025-06-05 02:58:46,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:59:02] 2025-06-05 02:58:46,540 | INFO     | **************************************
[2025-06-04 22:59:02] 2025-06-05 02:58:46,540 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:59:02] 2025-06-05 02:58:46,540 | INFO     | **************************************
[2025-06-04 22:59:02] 2025-06-05 02:58:46,540 | INFO     | 
[2025-06-04 22:59:02] 2025-06-05 02:58:46,543 | INFO     | architecture information:
[2025-06-04 22:59:02] 2025-06-05 02:58:46,552 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:59:02] 2025-06-05 02:58:46,581 | INFO     | cat /etc/os-release:
[2025-06-04 22:59:02] NAME="CentOS Linux"
[2025-06-04 22:59:02] VERSION="7 (Core)"
[2025-06-04 22:59:02] ID="centos"
[2025-06-04 22:59:02] ID_LIKE="rhel fedora"
[2025-06-04 22:59:02] VERSION_ID="7"
[2025-06-04 22:59:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:59:02] ANSI_COLOR="0;31"
[2025-06-04 22:59:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:59:02] HOME_URL="https://www.centos.org/"
[2025-06-04 22:59:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:59:02] 
[2025-06-04 22:59:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:59:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:59:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:59:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:59:02] 
[2025-06-04 22:59:02] 2025-06-05 02:58:46,581 | INFO     | **************************************
[2025-06-04 22:59:02] 2025-06-05 02:58:47,084 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 22:59:02] 2025-06-05 02:58:47,282 | INFO     | sufficient remaining disk space (75411488768 B)
[2025-06-04 22:59:02] 2025-06-05 02:58:47,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:59:02] 2025-06-05 02:58:47,282 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:59:02] 2025-06-05 02:58:47,282 | INFO     | update_server=False
[2025-06-04 22:59:02] 2025-06-05 02:58:47,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:59:02] 2025-06-05 02:58:47,283 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 22:59:02] 2025-06-05 02:58:47,283 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:59:02] 2025-06-05 02:58:47,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:59:02] 2025-06-05 02:58:47,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:59:02] 2025-06-05 02:58:47,367 | INFO     | all data control threads have been joined
[2025-06-04 22:59:02] 2025-06-05 02:58:47,753 | INFO     | all payload control threads have been joined
[2025-06-04 22:59:02] 2025-06-05 02:58:47,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:59:02] 2025-06-05 02:58:47,824 | INFO     | aborting loop
[2025-06-04 22:59:02] 2025-06-05 02:58:48,288 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,373 | INFO     | [data] control thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,405 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:59:02] 2025-06-05 02:58:48,416 | INFO     | [job] validate thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,546 | INFO     | all job control threads have been joined
[2025-06-04 22:59:02] 2025-06-05 02:58:48,600 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,759 | INFO     | [payload] control thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,764 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,769 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,830 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,893 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:48,995 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:49,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:59:02] 2025-06-05 02:58:49,552 | INFO     | [job] control thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:50,035 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:50,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:59:02] 2025-06-05 02:58:50,428 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:54,409 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:59:02] 2025-06-05 02:58:54,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787941934912)>', '<ExcThread(monitor, started 139787428165376)>']
[2025-06-04 22:59:02] 2025-06-05 02:58:55,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:59:02] 2025-06-05 02:58:55,331 | INFO     | [monitor] control thread has ended
[2025-06-04 22:59:02] 2025-06-05 02:58:59,948 | INFO     | all workflow threads have been joined
[2025-06-04 22:59:02] 2025-06-05 02:58:59,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:59:02] 2025-06-05 02:58:59,948 | INFO     | traces error code: 0
[2025-06-04 22:59:02] 2025-06-05 02:58:59,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:59:02] 2025-06-05 02:59:00,266 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:59:02] 2025-06-05 02:59:00,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:59:02] 2025-06-05 02:59:00,330 [wrapper] pilotpid: 41550
[2025-06-04 22:59:02] 2025-06-05 02:59:00,362 [wrapper] Pilot exit status: 0
[2025-06-04 22:59:02] 2025-06-05 02:59:00,604 [wrapper] pandaids: 6667667680
[2025-06-04 22:59:02] 2025-06-05 02:59:01,220 [wrapper] cleanup supervisor_pilot  7303 41551
[2025-06-04 22:59:02] 2025-06-05 02:59:01,268 [wrapper] Test setup, not cleaning
[2025-06-04 22:59:02] 2025-06-05 02:59:01,310 [wrapper] apfmon messages muted
[2025-06-04 22:59:02] 2025-06-05 02:59:01,379 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:59:02] 2025-06-05 02:59:01,455 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:59:02]  *** Error codes and diagnostics ***
[2025-06-04 22:59:02]     "exeErrorCode": 0,
[2025-06-04 22:59:02]     "exeErrorDiag": "",
[2025-06-04 22:59:02]     "pilotErrorCode": 0,
[2025-06-04 22:59:02]     "pilotErrorDiag": "",
[2025-06-04 22:59:02]  *** Listing of results directory ***
[2025-06-04 22:59:02] total 413568
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas    495897 May 27 18:42 pilot3.tar.gz
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas      5111 May 27 18:55 queuedata.json
[2025-06-04 22:59:02] -rwx------ 1 boincer umatlas     37140 May 27 18:56 runpilot2-wrapper.sh
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas       100 Jun  4 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:59:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 19:38 run_atlas
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas       105 Jun  4 19:38 job.xml
[2025-06-04 22:59:02] -rw-r--r-- 2 boincer umatlas 223697488 Jun  4 19:38 EVNT.44871834._002924.pool.root.1
[2025-06-04 22:59:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:38 start_atlas.sh
[2025-06-04 22:59:02] drwxrwx--x 2 boincer umatlas      4096 Jun  4 19:38 shared
[2025-06-04 22:59:02] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 19:38 input.tar.gz
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas         0 Jun  4 19:38 boinc_lockfile
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 19:38 pandaJob.out
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas    987117 Jun  4 19:38 agis_schedconf.cvmfs.json
[2025-06-04 22:59:02] drwx------ 4 boincer umatlas      4096 Jun  4 19:38 pilot3
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas 193032738 Jun  4 22:56 HITS.44871837._074592.pool.root.1
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas       530 Jun  4 22:56 boinc_task_state.xml
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas      1074 Jun  4 22:57 memory_monitor_summary.json
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas   1598969 Jun  4 22:57 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas    389558 Jun  4 22:57 log.44871837._074592.job.log.tgz.1
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas        95 Jun  4 22:58 pilot_heartbeat.json
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas      6338 Jun  4 22:58 init_data.xml
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas      7741 Jun  4 22:58 heartbeat.json
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 22:58 boinc_mmap_file
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas        28 Jun  4 22:58 wrapper_checkpoint.txt
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas      4476 Jun  4 22:58 pilotlog.txt
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas   1074093 Jun  4 22:59 log.44871837._074592.job.log.1
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas       357 Jun  4 22:59 output.list
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas       620 Jun  4 22:59 runtime_log
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas   1484800 Jun  4 22:59 result.tar.gz
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas      8660 Jun  4 22:59 runtime_log.err
[2025-06-04 22:59:02] -rw------- 1 boincer umatlas       661 Jun  4 22:59 BcoKDmYOIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUZaKDmaSoVEn.diag
[2025-06-04 22:59:02] -rw-r--r-- 1 boincer umatlas     20913 Jun  4 22:59 stderr.txt
[2025-06-04 22:59:02] HITS file was successfully produced:
[2025-06-04 22:59:03] -rw------- 1 boincer umatlas 193032738 Jun  4 22:56 shared/HITS.pool.root.1
[2025-06-04 22:59:03]  *** Contents of shared directory: ***
[2025-06-04 22:59:03] total 408940
[2025-06-04 22:59:03] -rw-r--r-- 2 boincer umatlas 223697488 Jun  4 19:38 ATLAS.root_0
[2025-06-04 22:59:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:38 start_atlas.sh
[2025-06-04 22:59:03] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 19:38 input.tar.gz
[2025-06-04 22:59:03] -rw------- 1 boincer umatlas 193032738 Jun  4 22:56 HITS.pool.root.1
[2025-06-04 22:59:03] -rw------- 1 boincer umatlas   1484800 Jun  4 22:59 result.tar.gz
22:59:04 (32997): run_atlas exited; CPU time 41081.332220
22:59:04 (32997): called boinc_finish(0)

</stderr_txt>
]]>

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