Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:37:52 (27645): wrapper (7.7.26015): starting
19:37:52 (27645): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:37:52] Arguments: --nthreads 8
[2025-06-04 19:37:52] Threads: 8
[2025-06-04 19:37:52] Checking for CVMFS
[2025-06-04 19:37:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:37:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:37:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:37:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:37:52] 2.11.2.0 5089 29452 290536 146798 2 339 17638018 18432001 11613 130560 0 106067877 99.523 99240266 34501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 19:37:52] CVMFS is ok
[2025-06-04 19:37:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:37:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:37:52] Further information can be found at the LHC@home message board.
[2025-06-04 19:37:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:37:52] Checking for apptainer binary...
[2025-06-04 19:37:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:37:52] Running /usr/bin/apptainer --version
[2025-06-04 19:37:52] apptainer version 1.3.2-1.el7
[2025-06-04 19:37:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:37:54] c-211-40.aglt2.org
[2025-06-04 19:37:54] apptainer works
[2025-06-04 19:37:54] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:37:54] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:37:54] Starting ATLAS job with PandaID=6667032793
[2025-06-04 19:37:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:02:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:02:24] 2025-06-05 03:02:05,974 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667032793/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,974 | INFO     | extracted standard info from prmon json
[2025-06-04 23:02:24] 2025-06-05 03:02:05,974 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:02:24] 2025-06-05 03:02:05,974 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:02:24] 2025-06-05 03:02:05,975 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:02:24] 2025-06-05 03:02:05,975 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:02:24] 2025-06-05 03:02:05,979 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:02:24] 2025-06-05 03:02:05,979 | INFO     | sum of square deviations: 2480645617.194997
[2025-06-04 23:02:24] 2025-06-05 03:02:05,980 | INFO     | sum of deviations: 5292869478.625013
[2025-06-04 23:02:24] 2025-06-05 03:02:05,980 | INFO     | mean x: 1749086383.655
[2025-06-04 23:02:24] 2025-06-05 03:02:05,980 | INFO     | mean y: 2467828.125
[2025-06-04 23:02:24] 2025-06-05 03:02:05,980 | INFO     | -- intersect: -3729498508.1202903
[2025-06-04 23:02:24] 2025-06-05 03:02:05,980 | INFO     | intersect: -3729498508.1202903
[2025-06-04 23:02:24] 2025-06-05 03:02:05,981 | INFO     | chi2: 2.166072485309651
[2025-06-04 23:02:24] 2025-06-05 03:02:05,981 | INFO     | sum of square deviations: 2299219112.071792
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | sum of deviations: 18260824794.93846
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | mean x: 1749086231.1589744
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | mean y: 2478503.292307692
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | -- intersect: -13889088877.448898
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | intersect: -13889088877.448898
[2025-06-04 23:02:24] 2025-06-05 03:02:05,982 | INFO     | chi2: 1.3871813408165248
[2025-06-04 23:02:24] 2025-06-05 03:02:05,983 | INFO     | current chi2=1.3871813408165248 (change=35.958683274709514 %)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,983 | INFO     | sum of square deviations: 2126850404.7631576
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | sum of deviations: 17820014292.368416
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | mean x: 1749086078.6578948
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | mean y: 2478113.2210526317
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | -- intersect: -14652402573.480188
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | intersect: -14652402573.480188
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | chi2: 1.3881202159694994
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | current chi2=1.3881202159694994 (change=-0.0676822218803777 %)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,984 | INFO     | right removable region: 189
[2025-06-04 23:02:24] 2025-06-05 03:02:05,985 | INFO     | sum of square deviations: 2299200202.071792
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | sum of deviations: -23724546316.328197
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | mean x: 1749086536.1589744
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | mean y: 2491945.558974359
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | -- intersect: 18050630816.187836
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | intersect: 18050630816.187836
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | chi2: 0.81822075351697
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | current chi2=0.81822075351697 (change=62.22560606507122 %)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,986 | INFO     | sum of square deviations: 2126824724.4421132
[2025-06-04 23:02:24] 2025-06-05 03:02:05,987 | INFO     | sum of deviations: -22463585236.842106
[2025-06-04 23:02:24] 2025-06-05 03:02:05,987 | INFO     | mean x: 1749086688.663158
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | mean y: 2490823.736842105
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | -- intersect: 18476395826.75354
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | intersect: 18476395826.75354
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | chi2: 0.818304641158531
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | current chi2=0.818304641158531 (change=-0.01025244607893411 %)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | left removable region: 20
[2025-06-04 23:02:24] 2025-06-05 03:02:05,988 | INFO     | sum of square deviations: 1496673586.674562
[2025-06-04 23:02:24] 2025-06-05 03:02:05,989 | INFO     | sum of deviations: -5654697781.165683
[2025-06-04 23:02:24] 2025-06-05 03:02:05,989 | INFO     | mean x: 1749086658.1775148
[2025-06-04 23:02:24] 2025-06-05 03:02:05,989 | INFO     | mean y: 2499226.272189349
[2025-06-04 23:02:24] 2025-06-05 03:02:05,989 | INFO     | -- intersect: 6610858278.721682
[2025-06-04 23:02:24] 2025-06-05 03:02:05,989 | INFO     | intersect: 6610858278.721682
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | chi2: 0.01522282976730166
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | -- intersect: 6610858278.721682
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | current memory leak: -3.78 B/s (using 169 data points, chi2=0.02)
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | ..............................
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | . Timing measurements:
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | . get job = 0 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | . initial setup = 2 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | . payload setup = 7 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,990 | INFO     | . stage-in = 0 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,991 | INFO     | . payload execution = 12145 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,991 | INFO     | . stage-out = 3 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,991 | INFO     | . log creation = 0 s
[2025-06-04 23:02:24] 2025-06-05 03:02:05,991 | INFO     | ..............................
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | 
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | job summary report
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | --------------------------------------------------
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | PanDA job id: 6667032793
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | task id: 44871837
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | errors: (none)
[2025-06-04 23:02:24] 2025-06-05 03:02:06,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | pilot state: finished 
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | transexitcode: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | exeerrorcode: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | exeerrordiag: 
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | exitcode: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | exitmsg: OK
[2025-06-04 23:02:24] 2025-06-05 03:02:06,292 | INFO     | cpuconsumptiontime: 41482 s
[2025-06-04 23:02:24] 2025-06-05 03:02:06,319 | INFO     | nevents: 400
[2025-06-04 23:02:24] 2025-06-05 03:02:06,319 | INFO     | neventsw: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:06,319 | INFO     | pid: 49556
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | pgrp: 49556
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | corecount: 8
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | event service: False
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | sizes: {0: 2397165, 1: 2397420, 6: 2397626, 12: 2397654, 12157: 2426862, 12161: 2435803, 12163: 2435987, 12224: 2436157}
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | --------------------------------------------------
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | 
[2025-06-04 23:02:24] 2025-06-05 03:02:06,320 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 23:02:24] 2025-06-05 03:02:06,452 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,452 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,453 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,453 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,453 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,453 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,453 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,456 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,457 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:02:24] 2025-06-05 03:02:06,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,457 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:02:24] 2025-06-05 03:02:06,457 | INFO     | job 6667032793 has completed (purged errors)
[2025-06-04 23:02:24] 2025-06-05 03:02:06,457 | INFO     | overall cleanup function is called
[2025-06-04 23:02:24] 2025-06-05 03:02:07,474 | INFO     | --- collectZombieJob: --- 10, [49556]
[2025-06-04 23:02:24] 2025-06-05 03:02:07,474 | INFO     | zombie collector waiting for pid 49556
[2025-06-04 23:02:24] 2025-06-05 03:02:07,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:02:24] 2025-06-05 03:02:07,478 | INFO     | collected zombie processes
[2025-06-04 23:02:24] 2025-06-05 03:02:07,478 | INFO     | will attempt to kill all subprocesses of pid=49556
[2025-06-04 23:02:24] 2025-06-05 03:02:07,865 | INFO     | process IDs to be killed: [49556] (in reverse order)
[2025-06-04 23:02:24] 2025-06-05 03:02:07,960 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:02:24] 2025-06-05 03:02:07,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:02:24] 2025-06-05 03:02:07,971 | INFO     | did not find any defunct processes belonging to 49556
[2025-06-04 23:02:24] 2025-06-05 03:02:07,987 | INFO     | did not find any defunct processes belonging to 49556
[2025-06-04 23:02:24] 2025-06-05 03:02:07,987 | INFO     | ready for new job
[2025-06-04 23:02:24] 2025-06-05 03:02:07,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:02:24] 2025-06-05 03:02:07,989 | INFO     | **************************************
[2025-06-04 23:02:24] 2025-06-05 03:02:07,989 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:02:24] 2025-06-05 03:02:07,989 | INFO     | **************************************
[2025-06-04 23:02:24] 2025-06-05 03:02:07,989 | INFO     | 
[2025-06-04 23:02:24] 2025-06-05 03:02:07,996 | INFO     | architecture information:
[2025-06-04 23:02:24] 2025-06-05 03:02:07,999 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:02:24] 2025-06-05 03:02:08,075 | INFO     | cat /etc/os-release:
[2025-06-04 23:02:24] NAME="CentOS Linux"
[2025-06-04 23:02:24] VERSION="7 (Core)"
[2025-06-04 23:02:24] ID="centos"
[2025-06-04 23:02:24] ID_LIKE="rhel fedora"
[2025-06-04 23:02:24] VERSION_ID="7"
[2025-06-04 23:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:02:24] ANSI_COLOR="0;31"
[2025-06-04 23:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:02:24] HOME_URL="https://www.centos.org/"
[2025-06-04 23:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:02:24] 
[2025-06-04 23:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:02:24] 
[2025-06-04 23:02:24] 2025-06-05 03:02:08,075 | INFO     | **************************************
[2025-06-04 23:02:24] 2025-06-05 03:02:08,578 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 23:02:24] 2025-06-05 03:02:08,677 | INFO     | sufficient remaining disk space (75636932608 B)
[2025-06-04 23:02:24] 2025-06-05 03:02:08,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:02:24] 2025-06-05 03:02:08,678 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:02:24] 2025-06-05 03:02:08,678 | INFO     | update_server=False
[2025-06-04 23:02:24] 2025-06-05 03:02:08,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:02:24] 2025-06-05 03:02:08,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:02:24] 2025-06-05 03:02:08,680 | INFO     | aborting loop
[2025-06-04 23:02:24] 2025-06-05 03:02:08,680 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:02:24] 2025-06-05 03:02:08,680 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:02:24] 2025-06-05 03:02:08,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:02:24] 2025-06-05 03:02:08,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:02:24] 2025-06-05 03:02:08,681 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:02:24] 2025-06-05 03:02:08,895 | INFO     | all data control threads have been joined
[2025-06-04 23:02:24] 2025-06-05 03:02:09,473 | INFO     | all job control threads have been joined
[2025-06-04 23:02:24] 2025-06-05 03:02:09,606 | INFO     | all payload control threads have been joined
[2025-06-04 23:02:24] 2025-06-05 03:02:09,687 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:09,696 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:09,900 | INFO     | [data] control thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:09,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:02:24] 2025-06-05 03:02:10,293 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,479 | INFO     | [job] control thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,612 | INFO     | [payload] control thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,690 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,727 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,811 | INFO     | [job] validate thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,828 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,832 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:10,966 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:11,058 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:11,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:02:24] 2025-06-05 03:02:12,121 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:13,934 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:02:24] 2025-06-05 03:02:15,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140133362259776)>', '<ExcThread(monitor, started 140132627769088)>']
[2025-06-04 23:02:24] 2025-06-05 03:02:15,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:02:24] 2025-06-05 03:02:15,722 | INFO     | [monitor] control thread has ended
[2025-06-04 23:02:24] 2025-06-05 03:02:20,151 | INFO     | all workflow threads have been joined
[2025-06-04 23:02:24] 2025-06-05 03:02:20,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:02:24] 2025-06-05 03:02:20,152 | INFO     | traces error code: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:20,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:02:24] 2025-06-05 03:02:21,542 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:02:24] 2025-06-05 03:02:21,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:02:24] 2025-06-05 03:02:21,637 [wrapper] pilotpid: 31382
[2025-06-04 23:02:24] 2025-06-05 03:02:21,686 [wrapper] Pilot exit status: 0
[2025-06-04 23:02:24] 2025-06-05 03:02:21,949 [wrapper] pandaids: 6667032793
[2025-06-04 23:02:24] 2025-06-05 03:02:22,308 [wrapper] cleanup supervisor_pilot  6935 31383
[2025-06-04 23:02:24] 2025-06-05 03:02:22,354 [wrapper] Test setup, not cleaning
[2025-06-04 23:02:24] 2025-06-05 03:02:22,424 [wrapper] apfmon messages muted
[2025-06-04 23:02:24] 2025-06-05 03:02:22,499 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:02:24] 2025-06-05 03:02:22,554 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:02:24]  *** Error codes and diagnostics ***
[2025-06-04 23:02:24]     "exeErrorCode": 0,
[2025-06-04 23:02:24]     "exeErrorDiag": "",
[2025-06-04 23:02:24]     "pilotErrorCode": 0,
[2025-06-04 23:02:24]     "pilotErrorDiag": "",
[2025-06-04 23:02:24]  *** Listing of results directory ***
[2025-06-04 23:02:24] total 411376
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas    495897 May 27 08:18 pilot3.tar.gz
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas      5111 May 27 08:59 queuedata.json
[2025-06-04 23:02:24] -rwx------ 1 boincer umatlas     37140 May 27 09:00 runpilot2-wrapper.sh
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas       100 Jun  4 19:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:02:24] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 19:37 run_atlas
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas       105 Jun  4 19:37 job.xml
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas 222127685 Jun  4 19:37 EVNT.44871834._002662.pool.root.1
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:37 start_atlas.sh
[2025-06-04 23:02:24] drwxrwx--x 2 boincer umatlas      4096 Jun  4 19:37 shared
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas    508877 Jun  4 19:37 input.tar.gz
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas         0 Jun  4 19:37 boinc_lockfile
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 19:37 pandaJob.out
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas    987117 Jun  4 19:38 agis_schedconf.cvmfs.json
[2025-06-04 23:02:24] drwx------ 4 boincer umatlas      4096 Jun  4 19:38 pilot3
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas      6338 Jun  4 22:58 init_data.xml
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas 192375677 Jun  4 22:59 HITS.44871837._067653.pool.root.1
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas       530 Jun  4 23:00 boinc_task_state.xml
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas      1075 Jun  4 23:00 memory_monitor_summary.json
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas   1598969 Jun  4 23:01 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas    368217 Jun  4 23:01 log.44871837._067653.job.log.tgz.1
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas        95 Jun  4 23:01 pilot_heartbeat.json
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas      7744 Jun  4 23:02 heartbeat.json
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 23:02 boinc_mmap_file
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas        28 Jun  4 23:02 wrapper_checkpoint.txt
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas      4476 Jun  4 23:02 pilotlog.txt
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas   1091218 Jun  4 23:02 log.44871837._067653.job.log.1
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas       357 Jun  4 23:02 output.list
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas       620 Jun  4 23:02 runtime_log
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas   1474560 Jun  4 23:02 result.tar.gz
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas      8660 Jun  4 23:02 runtime_log.err
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas       662 Jun  4 23:02 colKDmy58d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKTZKDmsr4MWo.diag
[2025-06-04 23:02:24] -rw-r--r-- 1 boincer umatlas     20912 Jun  4 23:02 stderr.txt
[2025-06-04 23:02:24] HITS file was successfully produced:
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas 192375677 Jun  4 22:59 shared/HITS.pool.root.1
[2025-06-04 23:02:24]  *** Contents of shared directory: ***
[2025-06-04 23:02:24] total 406756
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas 222127685 Jun  4 19:37 ATLAS.root_0
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:37 start_atlas.sh
[2025-06-04 23:02:24] -rw-r--r-- 2 boincer umatlas    508877 Jun  4 19:37 input.tar.gz
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas 192375677 Jun  4 22:59 HITS.pool.root.1
[2025-06-04 23:02:24] -rw------- 1 boincer umatlas   1474560 Jun  4 23:02 result.tar.gz
23:02:26 (27645): run_atlas exited; CPU time 41018.062205
23:02:26 (27645): called boinc_finish(0)

</stderr_txt>
]]>

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