Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:12 (1417357): wrapper (7.7.26015): starting
19:23:12 (1417357): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 19:23:12] Arguments: --nthreads 12
[2025-06-04 19:23:12] Threads: 12
[2025-06-04 19:23:12] Checking for CVMFS
[2025-06-04 19:23:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:23:12] 2.12.6.0 5047 32106 428256 146798 1 161 27266497 32935936 12513 16776704 1 104551299 99.634 103742172 26810 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 19:23:12] CVMFS is ok
[2025-06-04 19:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:23:12] Further information can be found at the LHC@home message board.
[2025-06-04 19:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:23:12] Checking for apptainer binary...
[2025-06-04 19:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:23:12] Running /usr/bin/apptainer --version
[2025-06-04 19:23:12] apptainer version 1.4.1-1.el9
[2025-06-04 19:23:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:23:13] c6-6-39-2.aglt2.org
[2025-06-04 19:23:13] apptainer works
[2025-06-04 19:23:13] Set ATHENA_PROC_NUMBER=12
[2025-06-04 19:23:13] Set ATHENA_CORE_NUMBER=12
[2025-06-04 19:23:13] Starting ATLAS job with PandaID=6668232191
[2025-06-04 19:23:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:36:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:36:08]  filesize=356156
[2025-06-04 20:36:08]  filetype=log
[2025-06-04 20:36:08]  guid=1a13a6dc-9398-4537-b31a-b577830d73d2
[2025-06-04 20:36:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 20:36:08]  is_altstaged=None
[2025-06-04 20:36:08]  is_tar=False
[2025-06-04 20:36:08]  lfn=log.44871837._081335.job.log.tgz.1
[2025-06-04 20:36:08]  mtime=0
[2025-06-04 20:36:08]  protocol_id=None
[2025-06-04 20:36:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 20:36:08]  replicas=None
[2025-06-04 20:36:08]  scope=mc23_13p6TeV
[2025-06-04 20:36:08]  status=None
[2025-06-04 20:36:08]  status_code=0
[2025-06-04 20:36:08]  storage_token=
[2025-06-04 20:36:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6668232191/log.44871837._081335.job.log.tgz.1
[2025-06-04 20:36:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/c0/log.44871837._081335.job.log.tgz.1
[2025-06-04 20:36:08]  workdir=None
[2025-06-04 20:36:08] ]
[2025-06-04 20:36:08] 2025-06-05 00:35:45,817 | INFO     | transferring file log.44871837._081335.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6668232191/log.44871837._081335.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 20:36:08] 2025-06-05 00:35:45,817 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6668232191/log.44871837._081335.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._081335.job
[2025-06-04 20:36:08] 2025-06-05 00:35:45,834 | INFO     | adding to output.list: log.44871837._081335.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/c0/log.44871837._081335.job.log.tg
[2025-06-04 20:36:08] 2025-06-05 00:35:45,835 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 20:36:08] 2025-06-05 00:35:45,835 | INFO     | summary of transferred files:
[2025-06-04 20:36:08] 2025-06-05 00:35:45,836 | INFO     |  -- lfn=log.44871837._081335.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 20:36:08] 2025-06-05 00:35:45,836 | INFO     | stage-out finished correctly
[2025-06-04 20:36:08] 2025-06-05 00:35:46,771 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 20:36:08] 2025-06-05 00:35:47,672 | INFO     | monitor loop #323: job 0:6668232191 is in state 'finished'
[2025-06-04 20:36:08] 2025-06-05 00:35:47,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:36:08] 2025-06-05 00:35:48,105 | INFO     | job 6668232191 has state=finished
[2025-06-04 20:36:08] 2025-06-05 00:35:48,105 | INFO     | preparing for final server update for job 6668232191 in state='finished'
[2025-06-04 20:36:08] 2025-06-05 00:35:48,105 | INFO     | this job has now completed (state=finished)
[2025-06-04 20:36:08] 2025-06-05 00:35:48,106 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 20:36:08] 2025-06-05 00:35:48,106 | INFO     | log transfer has been attempted: DONE
[2025-06-04 20:36:08] 2025-06-05 00:35:48,106 | INFO     | job 6668232191 has finished - writing final server update
[2025-06-04 20:36:08] 2025-06-05 00:35:48,106 | INFO     | total number of processed events: 400 (read)
[2025-06-04 20:36:08] 2025-06-05 00:35:48,122 | INFO     | executing command: lscpu
[2025-06-04 20:36:08] 2025-06-05 00:35:48,183 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 20:36:08] 2025-06-05 00:35:50,175 | INFO     | monitor loop #324: job 0:6668232191 is in state 'finished'
[2025-06-04 20:36:08] 2025-06-05 00:35:50,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:36:08] 2025-06-05 00:35:51,991 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 20:36:08] 2025-06-05 00:35:51,992 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6668232191/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:36:08] 2025-06-05 00:35:51,993 | INFO     | extracted standard info from prmon json
[2025-06-04 20:36:08] 2025-06-05 00:35:51,993 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:36:08] 2025-06-05 00:35:51,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:36:08] 2025-06-05 00:35:51,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:36:08] 2025-06-05 00:35:51,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:36:08] 2025-06-05 00:35:51,996 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:36:08] 2025-06-05 00:35:51,996 | INFO     | sum of square deviations: 81266640.0
[2025-06-04 20:36:08] 2025-06-05 00:35:51,996 | INFO     | sum of deviations: -8942438441.5
[2025-06-04 20:36:08] 2025-06-05 00:35:51,996 | INFO     | mean x: 1749081654.5
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | mean y: 2707722.890625
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | -- intersect: 192468583321.0847
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | intersect: 192468583321.0847
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | chi2: 0.1542195761814806
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | -- intersect: 192468583321.0847
[2025-06-04 20:36:08] 2025-06-05 00:35:51,997 | INFO     | current memory leak: -110.04 B/s (using 64 data points, chi2=0.15)
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | ..............................
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . Timing measurements:
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . get job = 0 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . initial setup = 2 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . payload setup = 6 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . stage-in = 0 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,998 | INFO     | . payload execution = 4317 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,999 | INFO     | . stage-out = 1 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,999 | INFO     | . log creation = 0 s
[2025-06-04 20:36:08] 2025-06-05 00:35:51,999 | INFO     | ..............................
[2025-06-04 20:36:08] 2025-06-05 00:35:52,098 | INFO     | 
[2025-06-04 20:36:08] 2025-06-05 00:35:52,098 | INFO     | job summary report
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | --------------------------------------------------
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | PanDA job id: 6668232191
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | task id: 44871837
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | errors: (none)
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | pilot state: finished 
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | transexitcode: 0
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | exeerrorcode: 0
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | exeerrordiag: 
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | exitcode: 0
[2025-06-04 20:36:08] 2025-06-05 00:35:52,099 | INFO     | exitmsg: OK
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | cpuconsumptiontime: 47486 s
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | nevents: 400
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | neventsw: 0
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | pid: 1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | pgrp: 1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | corecount: 12
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | event service: False
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | sizes: {0: 2397392, 4: 2397598, 11: 2397626, 4328: 2423495, 4329: 2432436, 4330: 2432492, 4335: 2432790}
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | --------------------------------------------------
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | 
[2025-06-04 20:36:08] 2025-06-05 00:35:52,100 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 20:36:08] 2025-06-05 00:35:52,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:36:08] 2025-06-05 00:35:52,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:36:08] 2025-06-05 00:35:52,121 | INFO     | job 6668232191 has completed (purged errors)
[2025-06-04 20:36:08] 2025-06-05 00:35:52,121 | INFO     | overall cleanup function is called
[2025-06-04 20:36:08] 2025-06-05 00:35:53,129 | INFO     | --- collectZombieJob: --- 10, [1428072]
[2025-06-04 20:36:08] 2025-06-05 00:35:53,129 | INFO     | zombie collector waiting for pid 1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:53,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:36:08] 2025-06-05 00:35:53,129 | INFO     | collected zombie processes
[2025-06-04 20:36:08] 2025-06-05 00:35:53,129 | INFO     | will attempt to kill all subprocesses of pid=1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:53,386 | INFO     | process IDs to be killed: [1428072] (in reverse order)
[2025-06-04 20:36:08] 2025-06-05 00:35:53,476 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:36:08] 2025-06-05 00:35:53,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:36:08] 2025-06-05 00:35:53,487 | INFO     | did not find any defunct processes belonging to 1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:53,497 | INFO     | did not find any defunct processes belonging to 1428072
[2025-06-04 20:36:08] 2025-06-05 00:35:53,498 | INFO     | ready for new job
[2025-06-04 20:36:08] 2025-06-05 00:35:53,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:36:08] 2025-06-05 00:35:53,499 | INFO     | **************************************
[2025-06-04 20:36:08] 2025-06-05 00:35:53,499 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:36:08] 2025-06-05 00:35:53,499 | INFO     | **************************************
[2025-06-04 20:36:08] 2025-06-05 00:35:53,500 | INFO     | 
[2025-06-04 20:36:08] 2025-06-05 00:35:53,514 | INFO     | architecture information:
[2025-06-04 20:36:08] 2025-06-05 00:35:53,515 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:36:08] 2025-06-05 00:35:53,530 | INFO     | cat /etc/os-release:
[2025-06-04 20:36:08] NAME="CentOS Linux"
[2025-06-04 20:36:08] VERSION="7 (Core)"
[2025-06-04 20:36:08] ID="centos"
[2025-06-04 20:36:08] ID_LIKE="rhel fedora"
[2025-06-04 20:36:08] VERSION_ID="7"
[2025-06-04 20:36:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:36:08] ANSI_COLOR="0;31"
[2025-06-04 20:36:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:36:08] HOME_URL="https://www.centos.org/"
[2025-06-04 20:36:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:36:08] 
[2025-06-04 20:36:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:36:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:36:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:36:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:36:08] 
[2025-06-04 20:36:08] 2025-06-05 00:35:53,530 | INFO     | **************************************
[2025-06-04 20:36:08] 2025-06-05 00:35:54,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 20:36:08] 2025-06-05 00:35:54,050 | INFO     | sufficient remaining disk space (76331089920 B)
[2025-06-04 20:36:08] 2025-06-05 00:35:54,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:36:08] 2025-06-05 00:35:54,050 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:36:08] 2025-06-05 00:35:54,050 | INFO     | update_server=False
[2025-06-04 20:36:08] 2025-06-05 00:35:54,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:36:08] 2025-06-05 00:35:54,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:36:08] 2025-06-05 00:35:54,051 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:36:08] 2025-06-05 00:35:54,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:36:08] 2025-06-05 00:35:54,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:36:08] 2025-06-05 00:35:54,052 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:36:08] 2025-06-05 00:35:54,053 | INFO     | aborting loop
[2025-06-04 20:36:08] 2025-06-05 00:35:54,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:36:08] 2025-06-05 00:35:54,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:36:08] 2025-06-05 00:35:55,050 | INFO     | all payload control threads have been joined
[2025-06-04 20:36:08] 2025-06-05 00:35:55,056 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,057 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,058 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,109 | INFO     | all data control threads have been joined
[2025-06-04 20:36:08] 2025-06-05 00:35:55,420 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,430 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,469 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:55,619 | INFO     | all job control threads have been joined
[2025-06-04 20:36:08] 2025-06-05 00:35:55,902 | INFO     | [job] validate thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,018 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,054 | INFO     | [payload] control thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,057 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,114 | INFO     | [data] control thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,205 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,246 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,384 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:56,625 | INFO     | [job] control thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:35:57,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:36:08] 2025-06-05 00:36:01,369 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:36:08] 2025-06-05 00:36:02,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108100224832)>', '<ExcThread(monitor, started 140107818436352)>']
[2025-06-04 20:36:08] 2025-06-05 00:36:03,092 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:36:08] 2025-06-05 00:36:03,093 | INFO     | [monitor] control thread has ended
[2025-06-04 20:36:08] 2025-06-05 00:36:07,775 | INFO     | all workflow threads have been joined
[2025-06-04 20:36:08] 2025-06-05 00:36:07,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:36:08] 2025-06-05 00:36:07,776 | INFO     | traces error code: 0
[2025-06-04 20:36:08] 2025-06-05 00:36:07,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:36:08] 2025-06-05 00:36:07,977 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:36:08] 2025-06-05 00:36:07,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:36:08] 2025-06-05 00:36:07,983 [wrapper] pilotpid: 1421490
[2025-06-04 20:36:08] 2025-06-05 00:36:07,987 [wrapper] Pilot exit status: 0
[2025-06-04 20:36:08] 2025-06-05 00:36:07,998 [wrapper] pandaids: 6668232191
[2025-06-04 20:36:08] 2025-06-05 00:36:08,059 [wrapper] cleanup supervisor_pilot 1647673 1421491
[2025-06-04 20:36:08] 2025-06-05 00:36:08,062 [wrapper] Test setup, not cleaning
[2025-06-04 20:36:08] 2025-06-05 00:36:08,065 [wrapper] apfmon messages muted
[2025-06-04 20:36:08] 2025-06-05 00:36:08,068 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:36:08] 2025-06-05 00:36:08,071 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:36:08]  *** Error codes and diagnostics ***
[2025-06-04 20:36:08]     "exeErrorCode": 0,
[2025-06-04 20:36:08]     "exeErrorDiag": "",
[2025-06-04 20:36:08]     "pilotErrorCode": 0,
[2025-06-04 20:36:08]     "pilotErrorDiag": "",
[2025-06-04 20:36:08]  *** Listing of results directory ***
[2025-06-04 20:36:08] total 414872
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas    495897 May 28 04:16 pilot3.tar.gz
[2025-06-04 20:36:08] -rwx------. 1 boincer umatlas     37140 May 28 04:19 runpilot2-wrapper.sh
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas      5111 May 28 04:19 queuedata.json
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas       100 Jun  4 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:36:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 19:23 run_atlas
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas       105 Jun  4 19:23 job.xml
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas 221390923 Jun  4 19:23 EVNT.44871834._003176.pool.root.1
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:23 start_atlas.sh
[2025-06-04 20:36:08] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 19:23 shared
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 19:23 input.tar.gz
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas         0 Jun  4 19:23 boinc_lockfile
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 19:23 pandaJob.out
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas    987117 Jun  4 19:23 agis_schedconf.cvmfs.json
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas   1598969 Jun  4 19:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:36:08] drwx------. 4 boincer umatlas      4096 Jun  4 19:23 pilot3
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas      6841 Jun  4 20:30 init_data.xml
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas 198023170 Jun  4 20:35 HITS.44871837._081335.pool.root.1
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas       529 Jun  4 20:35 boinc_task_state.xml
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas      1032 Jun  4 20:35 memory_monitor_summary.json
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas        27 Jun  4 20:35 wrapper_checkpoint.txt
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 20:35 boinc_mmap_file
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas        95 Jun  4 20:35 pilot_heartbeat.json
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas    356156 Jun  4 20:35 log.44871837._081335.job.log.tgz.1
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas      7723 Jun  4 20:35 heartbeat.json
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas      4476 Jun  4 20:36 pilotlog.txt
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas    434528 Jun  4 20:36 log.44871837._081335.job.log.1
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas       357 Jun  4 20:36 output.list
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas       620 Jun  4 20:36 runtime_log
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas    808960 Jun  4 20:36 result.tar.gz
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas       657 Jun  4 20:36 TSxLDmgBRe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbCTKDmSER74m.diag
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 20:36 runtime_log.err
[2025-06-04 20:36:08] -rw-r--r--. 1 boincer umatlas     21151 Jun  4 20:36 stderr.txt
[2025-06-04 20:36:08] HITS file was successfully produced:
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas 198023170 Jun  4 20:35 shared/HITS.pool.root.1
[2025-06-04 20:36:08]  *** Contents of shared directory: ***
[2025-06-04 20:36:08] total 410904
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas 221390923 Jun  4 19:23 ATLAS.root_0
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:23 start_atlas.sh
[2025-06-04 20:36:08] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 19:23 input.tar.gz
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas 198023170 Jun  4 20:35 HITS.pool.root.1
[2025-06-04 20:36:08] -rw-------. 1 boincer umatlas    808960 Jun  4 20:36 result.tar.gz
20:36:10 (1417357): run_atlas exited; CPU time 47531.816180
20:36:10 (1417357): called boinc_finish(0)

</stderr_txt>
]]>

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