Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:29 (342934): wrapper (7.7.26015): starting
19:23:29 (342934): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:23:29] Arguments: --nthreads 8
[2025-06-04 19:23:29] Threads: 8
[2025-06-04 19:23:29] Checking for CVMFS
[2025-06-04 19:23:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:23:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:23:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:23:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:23:29] 2.12.6.0 213643 32874 542068 146798 2 547 35900431 40960001 19156 16776704 0 399811011 99.753 250258057 23415 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 19:23:29] CVMFS is ok
[2025-06-04 19:23:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:23:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:23:29] Further information can be found at the LHC@home message board.
[2025-06-04 19:23:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:23:29] Checking for apptainer binary...
[2025-06-04 19:23:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:23:29] Running /usr/bin/apptainer --version
[2025-06-04 19:23:29] apptainer version 1.4.1-1.el9
[2025-06-04 19:23:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:23:29] c7-2-17.aglt2.org
[2025-06-04 19:23:29] apptainer works
[2025-06-04 19:23:29] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:23:29] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:23:30] Starting ATLAS job with PandaID=6667883916
[2025-06-04 19:23:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:46:00]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:46:00]  filetype=log
[2025-06-04 20:46:00]  guid=0a27637b-0e88-4c7e-971b-9b04b671cb6f
[2025-06-04 20:46:00]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 20:46:00]  is_altstaged=None
[2025-06-04 20:46:00]  is_tar=False
[2025-06-04 20:46:00]  lfn=log.44871837._076877.job.log.tgz.1
[2025-06-04 20:46:00]  mtime=0
[2025-06-04 20:46:00]  protocol_id=None
[2025-06-04 20:46:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 20:46:00]  replicas=None
[2025-06-04 20:46:00]  scope=mc23_13p6TeV
[2025-06-04 20:46:00]  status=None
[2025-06-04 20:46:00]  status_code=0
[2025-06-04 20:46:00]  storage_token=
[2025-06-04 20:46:00]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6667883916/log.44871837._076877.job.log.tgz.1
[2025-06-04 20:46:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/11/log.44871837._076877.job.log.tgz.1
[2025-06-04 20:46:00]  workdir=None
[2025-06-04 20:46:00] ]
[2025-06-04 20:46:00] 2025-06-05 00:45:39,299 | INFO     | transferring file log.44871837._076877.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6667883916/log.44871837._076877.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 20:46:00] 2025-06-05 00:45:39,299 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6667883916/log.44871837._076877.job.log.tgz.1 /tmp/boinchome/slots/2/log.44871837._076877.job
[2025-06-04 20:46:00] 2025-06-05 00:45:39,320 | INFO     | adding to output.list: log.44871837._076877.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/11/log.44871837._076877.job.log.tg
[2025-06-04 20:46:00] 2025-06-05 00:45:39,322 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 20:46:00] 2025-06-05 00:45:39,322 | INFO     | summary of transferred files:
[2025-06-04 20:46:00] 2025-06-05 00:45:39,323 | INFO     |  -- lfn=log.44871837._076877.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 20:46:00] 2025-06-05 00:45:39,323 | INFO     | stage-out finished correctly
[2025-06-04 20:46:00] 2025-06-05 00:45:39,392 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 20:46:00] 2025-06-05 00:45:41,150 | INFO     | job 6667883916 has state=finished
[2025-06-04 20:46:00] 2025-06-05 00:45:41,150 | INFO     | preparing for final server update for job 6667883916 in state='finished'
[2025-06-04 20:46:00] 2025-06-05 00:45:41,150 | INFO     | this job has now completed (state=finished)
[2025-06-04 20:46:00] 2025-06-05 00:45:41,151 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 20:46:00] 2025-06-05 00:45:41,151 | INFO     | log transfer has been attempted: DONE
[2025-06-04 20:46:00] 2025-06-05 00:45:41,151 | INFO     | job 6667883916 has finished - writing final server update
[2025-06-04 20:46:00] 2025-06-05 00:45:41,151 | INFO     | total number of processed events: 400 (read)
[2025-06-04 20:46:00] 2025-06-05 00:45:41,173 | INFO     | executing command: lscpu
[2025-06-04 20:46:00] 2025-06-05 00:45:41,268 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 20:46:00] 2025-06-05 00:45:42,532 | INFO     | PID=358943 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 20:46:00] 2025-06-05 00:45:42,532 | INFO     | .. there are 36 such processes running
[2025-06-04 20:46:00] 2025-06-05 00:45:42,535 | WARNING  | process 388789 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 20:46:00] 2025-06-05 00:45:42,536 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6667883916/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:46:00] 2025-06-05 00:45:42,953 | INFO     | number of running child processes to parent process 388789: 1
[2025-06-04 20:46:00] 2025-06-05 00:45:42,953 | INFO     | maximum number of monitored processes: 6
[2025-06-04 20:46:00] 2025-06-05 00:45:45,393 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 20:46:00] 2025-06-05 00:45:45,393 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6667883916/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:46:00] 2025-06-05 00:45:45,394 | INFO     | extracted standard info from prmon json
[2025-06-04 20:46:00] 2025-06-05 00:45:45,394 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:46:00] 2025-06-05 00:45:45,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:46:00] 2025-06-05 00:45:45,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:46:00] 2025-06-05 00:45:45,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | sum of square deviations: 125630262.5
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | sum of deviations: -3840969797.999999
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | mean x: 1749081975.5
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | mean y: 2275957.7027027025
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | -- intersect: 53478014274.508934
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | intersect: 53478014274.508934
[2025-06-04 20:46:00] 2025-06-05 00:45:45,396 | INFO     | chi2: 0.03983599013058711
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | -- intersect: 53478014274.508934
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | current memory leak: -30.57 B/s (using 74 data points, chi2=0.04)
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | ..............................
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . Timing measurements:
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . get job = 0 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . initial setup = 2 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . payload setup = 5 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . stage-in = 0 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . payload execution = 4894 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . stage-out = 0 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,397 | INFO     | . log creation = 0 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,398 | INFO     | ..............................
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | 
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | job summary report
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | --------------------------------------------------
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | PanDA job id: 6667883916
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | task id: 44871837
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | errors: (none)
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | pilot state: finished 
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | transexitcode: 0
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | exeerrorcode: 0
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | exeerrordiag: 
[2025-06-04 20:46:00] 2025-06-05 00:45:45,790 | INFO     | exitcode: 0
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | exitmsg: OK
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | cpuconsumptiontime: 36555 s
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | nevents: 400
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | neventsw: 0
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | pid: 388789
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | pgrp: 388789
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | corecount: 8
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | event service: False
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | sizes: {0: 2397221, 1: 2397420, 5: 2397626, 11: 2397682, 4903: 2423839, 4905: 2432964, 4911: 2433078}
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | --------------------------------------------------
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | 
[2025-06-04 20:46:00] 2025-06-05 00:45:45,791 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 20:46:00] 2025-06-05 00:45:45,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,814 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:46:00] 2025-06-05 00:45:45,814 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,814 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:46:00] 2025-06-05 00:45:45,814 | INFO     | job 6667883916 has completed (purged errors)
[2025-06-04 20:46:00] 2025-06-05 00:45:45,814 | INFO     | overall cleanup function is called
[2025-06-04 20:46:00] 2025-06-05 00:45:46,822 | INFO     | --- collectZombieJob: --- 10, [388789]
[2025-06-04 20:46:00] 2025-06-05 00:45:46,822 | INFO     | zombie collector waiting for pid 388789
[2025-06-04 20:46:00] 2025-06-05 00:45:46,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:46:00] 2025-06-05 00:45:46,822 | INFO     | collected zombie processes
[2025-06-04 20:46:00] 2025-06-05 00:45:46,822 | INFO     | will attempt to kill all subprocesses of pid=388789
[2025-06-04 20:46:00] 2025-06-05 00:45:47,266 | INFO     | process IDs to be killed: [388789] (in reverse order)
[2025-06-04 20:46:00] 2025-06-05 00:45:47,414 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:46:00] 2025-06-05 00:45:47,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:46:00] 2025-06-05 00:45:47,434 | INFO     | did not find any defunct processes belonging to 388789
[2025-06-04 20:46:00] 2025-06-05 00:45:47,454 | INFO     | did not find any defunct processes belonging to 388789
[2025-06-04 20:46:00] 2025-06-05 00:45:47,455 | INFO     | ready for new job
[2025-06-04 20:46:00] 2025-06-05 00:45:47,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:46:00] 2025-06-05 00:45:47,457 | INFO     | **************************************
[2025-06-04 20:46:00] 2025-06-05 00:45:47,457 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:46:00] 2025-06-05 00:45:47,457 | INFO     | **************************************
[2025-06-04 20:46:00] 2025-06-05 00:45:47,457 | INFO     | 
[2025-06-04 20:46:00] 2025-06-05 00:45:47,474 | INFO     | architecture information:
[2025-06-04 20:46:00] 2025-06-05 00:45:47,475 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:46:00] 2025-06-05 00:45:47,493 | INFO     | cat /etc/os-release:
[2025-06-04 20:46:00] NAME="CentOS Linux"
[2025-06-04 20:46:00] VERSION="7 (Core)"
[2025-06-04 20:46:00] ID="centos"
[2025-06-04 20:46:00] ID_LIKE="rhel fedora"
[2025-06-04 20:46:00] VERSION_ID="7"
[2025-06-04 20:46:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:46:00] ANSI_COLOR="0;31"
[2025-06-04 20:46:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:46:00] HOME_URL="https://www.centos.org/"
[2025-06-04 20:46:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:46:00] 
[2025-06-04 20:46:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:46:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:46:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:46:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:46:00] 
[2025-06-04 20:46:00] 2025-06-05 00:45:47,493 | INFO     | **************************************
[2025-06-04 20:46:00] 2025-06-05 00:45:47,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 20:46:00] 2025-06-05 00:45:48,013 | INFO     | sufficient remaining disk space (129414201344 B)
[2025-06-04 20:46:00] 2025-06-05 00:45:48,014 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:46:00] 2025-06-05 00:45:48,014 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:46:00] 2025-06-05 00:45:48,014 | INFO     | update_server=False
[2025-06-04 20:46:00] 2025-06-05 00:45:48,014 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:46:00] 2025-06-05 00:45:48,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:46:00] 2025-06-05 00:45:48,433 | INFO     | all payload control threads have been joined
[2025-06-04 20:46:00] 2025-06-05 00:45:48,548 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:46:00] 2025-06-05 00:45:48,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:46:00] 2025-06-05 00:45:48,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:46:00] 2025-06-05 00:45:48,923 | INFO     | all data control threads have been joined
[2025-06-04 20:46:00] 2025-06-05 00:45:48,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:46:00] 2025-06-05 00:45:48,969 | INFO     | aborting loop
[2025-06-04 20:46:00] 2025-06-05 00:45:49,015 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,229 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,427 | INFO     | all job control threads have been joined
[2025-06-04 20:46:00] 2025-06-05 00:45:49,436 | INFO     | [payload] control thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,696 | INFO     | [job] validate thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,731 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,854 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,928 | INFO     | [data] control thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:49,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:46:00] 2025-06-05 00:45:49,974 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,020 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,104 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,298 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,432 | INFO     | [job] control thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,463 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:50,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:46:00] 2025-06-05 00:45:51,480 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:53,979 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:46:00] 2025-06-05 00:45:55,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687204480832)>', '<ExcThread(monitor, started 139686488041216)>']
[2025-06-04 20:46:00] 2025-06-05 00:45:55,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:46:00] 2025-06-05 00:45:55,581 | INFO     | [monitor] control thread has ended
[2025-06-04 20:46:00] 2025-06-05 00:46:00,379 | INFO     | all workflow threads have been joined
[2025-06-04 20:46:00] 2025-06-05 00:46:00,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:46:00] 2025-06-05 00:46:00,381 | INFO     | traces error code: 0
[2025-06-04 20:46:00] 2025-06-05 00:46:00,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:46:00] 2025-06-05 00:46:00,538 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:46:00] 2025-06-05 00:46:00,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:46:00] 2025-06-05 00:46:00,543 [wrapper] pilotpid: 358943
[2025-06-04 20:46:00] 2025-06-05 00:46:00,544 [wrapper] Pilot exit status: 0
[2025-06-04 20:46:00] 2025-06-05 00:46:00,554 [wrapper] pandaids: 6667883916
[2025-06-04 20:46:00] 2025-06-05 00:46:00,666 [wrapper] cleanup supervisor_pilot 1265063 358944
[2025-06-04 20:46:00] 2025-06-05 00:46:00,670 [wrapper] Test setup, not cleaning
[2025-06-04 20:46:00] 2025-06-05 00:46:00,673 [wrapper] apfmon messages muted
[2025-06-04 20:46:00] 2025-06-05 00:46:00,677 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:46:00] 2025-06-05 00:46:00,679 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:46:00]  *** Error codes and diagnostics ***
[2025-06-04 20:46:00]     "exeErrorCode": 0,
[2025-06-04 20:46:00]     "exeErrorDiag": "",
[2025-06-04 20:46:00]     "pilotErrorCode": 0,
[2025-06-04 20:46:00]     "pilotErrorDiag": "",
[2025-06-04 20:46:00]  *** Listing of results directory ***
[2025-06-04 20:46:00] total 419192
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas    495897 May 27 21:31 pilot3.tar.gz
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas      5111 May 27 21:41 queuedata.json
[2025-06-04 20:46:00] -rwx------. 1 boincer umatlas     37140 May 27 21:44 runpilot2-wrapper.sh
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas       100 Jun  4 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:46:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 19:23 run_atlas
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas       105 Jun  4 19:23 job.xml
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas 224616316 Jun  4 19:23 EVNT.44871834._003007.pool.root.1
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:23 start_atlas.sh
[2025-06-04 20:46:00] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 19:23 shared
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 19:23 input.tar.gz
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas         0 Jun  4 19:23 boinc_lockfile
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 19:23 pandaJob.out
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas    987117 Jun  4 19:23 agis_schedconf.cvmfs.json
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas   1598969 Jun  4 19:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:46:00] drwx------. 4 boincer umatlas      4096 Jun  4 19:23 pilot3
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas        95 Jun  4 20:44 pilot_heartbeat.json
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas       529 Jun  4 20:45 boinc_task_state.xml
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas 199227892 Jun  4 20:45 HITS.44871837._076877.pool.root.1
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas      6935 Jun  4 20:45 init_data.xml
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas      1032 Jun  4 20:45 memory_monitor_summary.json
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas    318728 Jun  4 20:45 log.44871837._076877.job.log.tgz.1
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas      7689 Jun  4 20:45 heartbeat.json
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas        27 Jun  4 20:45 wrapper_checkpoint.txt
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 20:46 boinc_mmap_file
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas      4354 Jun  4 20:46 pilotlog.txt
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas    474235 Jun  4 20:46 log.44871837._076877.job.log.1
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas       357 Jun  4 20:46 output.list
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas       620 Jun  4 20:46 runtime_log
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas    808960 Jun  4 20:46 result.tar.gz
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 20:46 runtime_log.err
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas       653 Jun  4 20:46 qF9LDmo1Ke7n9Rq4apOajLDm4fhM0noT9bVof3QYDm1kSKDmsBdAQo.diag
[2025-06-04 20:46:00] -rw-r--r--. 1 boincer umatlas     21285 Jun  4 20:46 stderr.txt
[2025-06-04 20:46:00] HITS file was successfully produced:
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas 199227892 Jun  4 20:45 shared/HITS.pool.root.1
[2025-06-04 20:46:00]  *** Contents of shared directory: ***
[2025-06-04 20:46:00] total 415224
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas 224616316 Jun  4 19:23 ATLAS.root_0
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:23 start_atlas.sh
[2025-06-04 20:46:00] -rw-r--r--. 2 boincer umatlas    508880 Jun  4 19:23 input.tar.gz
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas 199227892 Jun  4 20:45 HITS.pool.root.1
[2025-06-04 20:46:00] -rw-------. 1 boincer umatlas    808960 Jun  4 20:46 result.tar.gz
20:46:02 (342934): run_atlas exited; CPU time 36758.004492
20:46:02 (342934): called boinc_finish(0)

</stderr_txt>
]]>

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