Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:17:34 (2019739): wrapper (7.7.26015): starting
19:17:34 (2019739): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:17:34] Arguments: --nthreads 8
[2025-06-04 19:17:34] Threads: 8
[2025-06-04 19:17:34] Checking for CVMFS
[2025-06-04 19:17:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:17:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:17:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:17:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:17:36] 2.12.6.0 5356 472 141920 146798 0 104 24002896 32935936 23967 16776704 0 2132850 99.651 1741443 27725 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 19:17:36] CVMFS is ok
[2025-06-04 19:17:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:17:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:17:36] Further information can be found at the LHC@home message board.
[2025-06-04 19:17:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:17:36] Checking for apptainer binary...
[2025-06-04 19:17:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:17:36] Running /usr/bin/apptainer --version
[2025-06-04 19:17:36] apptainer version 1.4.1-1.el9
[2025-06-04 19:17:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:17:36] c7-16-8.aglt2.org
[2025-06-04 19:17:36] apptainer works
[2025-06-04 19:17:36] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:17:36] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:17:36] Starting ATLAS job with PandaID=6677601776
[2025-06-04 19:17:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:03:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:03:55] 2025-06-05 01:03:35,447 | INFO     | monitor loop #440: job 0:6677601776 is in state 'finished'
[2025-06-04 21:03:55] 2025-06-05 01:03:35,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:03:55] 2025-06-05 01:03:36,853 | INFO     | PID=2027301 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 21:03:55] 2025-06-05 01:03:36,853 | INFO     | .. there are 22 such processes running
[2025-06-04 21:03:55] 2025-06-05 01:03:37,957 | INFO     | monitor loop #441: job 0:6677601776 is in state 'finished'
[2025-06-04 21:03:55] 2025-06-05 01:03:37,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:03:55] 2025-06-05 01:03:40,461 | INFO     | monitor loop #442: job 0:6677601776 is in state 'finished'
[2025-06-04 21:03:55] 2025-06-05 01:03:40,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,051 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 21:03:55] 2025-06-05 01:03:42,051 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677601776/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,052 | INFO     | extracted standard info from prmon json
[2025-06-04 21:03:55] 2025-06-05 01:03:42,052 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:03:55] 2025-06-05 01:03:42,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:03:55] 2025-06-05 01:03:42,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:03:55] 2025-06-05 01:03:42,052 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:03:55] 2025-06-05 01:03:42,054 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:03:55] 2025-06-05 01:03:42,054 | INFO     | sum of square deviations: 338794860.52427226
[2025-06-04 21:03:55] 2025-06-05 01:03:42,054 | INFO     | sum of deviations: 2406877416.504853
[2025-06-04 21:03:55] 2025-06-05 01:03:42,054 | INFO     | mean x: 1749082247.0679612
[2025-06-04 21:03:55] 2025-06-05 01:03:42,054 | INFO     | mean y: 2254672.213592233
[2025-06-04 21:03:55] 2025-06-05 01:03:42,055 | INFO     | -- intersect: -12423632053.349154
[2025-06-04 21:03:55] 2025-06-05 01:03:42,059 | INFO     | intersect: -12423632053.349154
[2025-06-04 21:03:55] 2025-06-05 01:03:42,059 | INFO     | chi2: 1.489793497142368
[2025-06-04 21:03:55] 2025-06-05 01:03:42,059 | INFO     | sum of square deviations: 291810068.0000002
[2025-06-04 21:03:55] 2025-06-05 01:03:42,059 | INFO     | sum of deviations: 3133797817.2857094
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | mean x: 1749082094.5714285
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | mean y: 2257008.673469388
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | -- intersect: -18781432285.492542
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | intersect: -18781432285.492542
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | chi2: 1.4914678568012487
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | current chi2=1.4914678568012487 (change=-0.11238870770293241 %)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | right removable region: 97
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | sum of square deviations: 291805798.0000002
[2025-06-04 21:03:55] 2025-06-05 01:03:42,060 | INFO     | sum of deviations: -10864286753.999998
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | mean x: 1749082399.5714285
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | mean y: 2296774.1428571427
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | -- intersect: 65122773733.680145
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | intersect: 65122773733.680145
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | chi2: 0.08219993839232931
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | current chi2=0.08219993839232931 (change=94.48246092159751 %)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | sum of square deviations: 249374960.47311825
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | sum of deviations: -9534139439.924732
[2025-06-04 21:03:55] 2025-06-05 01:03:42,061 | INFO     | mean x: 1749082552.0752687
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | mean y: 2292079.989247312
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | -- intersect: 66873468367.24379
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | intersect: 66873468367.24379
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | chi2: 0.07780528699362721
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | current chi2=0.07780528699362721 (change=5.3462952462652895 %)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | left removable region: 20
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | sum of square deviations: 141523788.36363658
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | sum of deviations: -7635311493.909091
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | mean x: 1749082674.090909
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | mean y: 2295051.701298701
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | -- intersect: 94366579669.13437
[2025-06-04 21:03:55] 2025-06-05 01:03:42,062 | INFO     | intersect: 94366579669.13437
[2025-06-04 21:03:55] 2025-06-05 01:03:42,067 | INFO     | chi2: 0.05451276969274352
[2025-06-04 21:03:55] 2025-06-05 01:03:42,067 | INFO     | -- intersect: 94366579669.13437
[2025-06-04 21:03:55] 2025-06-05 01:03:42,067 | INFO     | current memory leak: -53.95 B/s (using 77 data points, chi2=0.05)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,067 | INFO     | ..............................
[2025-06-04 21:03:55] 2025-06-05 01:03:42,067 | INFO     | . Timing measurements:
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . get job = 0 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . initial setup = 3 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . payload setup = 18 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . stage-in = 0 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . payload execution = 6279 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . stage-out = 1 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | . log creation = 0 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,068 | INFO     | ..............................
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | 
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | job summary report
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | --------------------------------------------------
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | PanDA job id: 6677601776
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | task id: 45006595
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | errors: (none)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | pilot state: finished 
[2025-06-04 21:03:55] 2025-06-05 01:03:42,159 | INFO     | transexitcode: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | exeerrorcode: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | exeerrordiag: 
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | exitcode: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | exitmsg: OK
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | cpuconsumptiontime: 27971 s
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | nevents: 400
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | neventsw: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | pid: 2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | pgrp: 2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | corecount: 8
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | event service: False
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | sizes: {0: 2397342, 11: 2397576, 6302: 2424422, 6305: 2433419, 6317: 2433533}
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | --------------------------------------------------
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | 
[2025-06-04 21:03:55] 2025-06-05 01:03:42,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,183 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | job 6677601776 has completed (purged errors)
[2025-06-04 21:03:55] 2025-06-05 01:03:42,184 | INFO     | overall cleanup function is called
[2025-06-04 21:03:55] 2025-06-05 01:03:43,208 | INFO     | --- collectZombieJob: --- 10, [2034162]
[2025-06-04 21:03:55] 2025-06-05 01:03:43,208 | INFO     | zombie collector waiting for pid 2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:43,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:03:55] 2025-06-05 01:03:43,208 | INFO     | collected zombie processes
[2025-06-04 21:03:55] 2025-06-05 01:03:43,208 | INFO     | will attempt to kill all subprocesses of pid=2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:43,942 | INFO     | process IDs to be killed: [2034162] (in reverse order)
[2025-06-04 21:03:55] 2025-06-05 01:03:44,140 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:03:55] 2025-06-05 01:03:44,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:03:55] 2025-06-05 01:03:44,190 | INFO     | did not find any defunct processes belonging to 2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:44,207 | INFO     | did not find any defunct processes belonging to 2034162
[2025-06-04 21:03:55] 2025-06-05 01:03:44,207 | INFO     | ready for new job
[2025-06-04 21:03:55] 2025-06-05 01:03:44,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:03:55] 2025-06-05 01:03:44,209 | INFO     | **************************************
[2025-06-04 21:03:55] 2025-06-05 01:03:44,209 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:03:55] 2025-06-05 01:03:44,209 | INFO     | **************************************
[2025-06-04 21:03:55] 2025-06-05 01:03:44,209 | INFO     | 
[2025-06-04 21:03:55] 2025-06-05 01:03:44,233 | INFO     | architecture information:
[2025-06-04 21:03:55] 2025-06-05 01:03:44,233 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:03:55] 2025-06-05 01:03:44,251 | INFO     | cat /etc/os-release:
[2025-06-04 21:03:55] NAME="CentOS Linux"
[2025-06-04 21:03:55] VERSION="7 (Core)"
[2025-06-04 21:03:55] ID="centos"
[2025-06-04 21:03:55] ID_LIKE="rhel fedora"
[2025-06-04 21:03:55] VERSION_ID="7"
[2025-06-04 21:03:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:03:55] ANSI_COLOR="0;31"
[2025-06-04 21:03:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:03:55] HOME_URL="https://www.centos.org/"
[2025-06-04 21:03:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:03:55] 
[2025-06-04 21:03:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:03:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:03:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:03:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:03:55] 
[2025-06-04 21:03:55] 2025-06-05 01:03:44,251 | INFO     | **************************************
[2025-06-04 21:03:55] 2025-06-05 01:03:44,757 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 21:03:55] 2025-06-05 01:03:44,796 | INFO     | sufficient remaining disk space (75437703168 B)
[2025-06-04 21:03:55] 2025-06-05 01:03:44,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:03:55] 2025-06-05 01:03:44,796 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:03:55] 2025-06-05 01:03:44,797 | INFO     | update_server=False
[2025-06-04 21:03:55] 2025-06-05 01:03:44,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:03:55] 2025-06-05 01:03:44,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:03:55] 2025-06-05 01:03:44,798 | INFO     | aborting loop
[2025-06-04 21:03:55] 2025-06-05 01:03:44,881 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:03:55] 2025-06-05 01:03:44,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:03:55] 2025-06-05 01:03:44,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:03:55] 2025-06-05 01:03:44,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:03:55] 2025-06-05 01:03:45,118 | INFO     | all payload control threads have been joined
[2025-06-04 21:03:55] 2025-06-05 01:03:45,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:03:55] 2025-06-05 01:03:45,714 | INFO     | all job control threads have been joined
[2025-06-04 21:03:55] 2025-06-05 01:03:45,803 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:45,804 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:45,894 | INFO     | all data control threads have been joined
[2025-06-04 21:03:55] 2025-06-05 01:03:45,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,005 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,124 | INFO     | [payload] control thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,243 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,249 | INFO     | [job] validate thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,536 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,726 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,731 | INFO     | [job] control thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:46,901 | INFO     | [data] control thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:47,074 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:47,114 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:47,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:03:55] 2025-06-05 01:03:47,299 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:48,191 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:48,947 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:03:55] 2025-06-05 01:03:49,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820042868544)>', '<ExcThread(monitor, started 139819556525824)>']
[2025-06-04 21:03:55] 2025-06-05 01:03:49,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:03:55] 2025-06-05 01:03:49,913 | INFO     | [monitor] control thread has ended
[2025-06-04 21:03:55] 2025-06-05 01:03:54,798 | INFO     | all workflow threads have been joined
[2025-06-04 21:03:55] 2025-06-05 01:03:54,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:03:55] 2025-06-05 01:03:54,799 | INFO     | traces error code: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:54,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:03:55] 2025-06-05 01:03:54,972 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:03:55] 2025-06-05 01:03:54,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:03:55] 2025-06-05 01:03:54,976 [wrapper] pilotpid: 2027301
[2025-06-04 21:03:55] 2025-06-05 01:03:54,978 [wrapper] Pilot exit status: 0
[2025-06-04 21:03:55] 2025-06-05 01:03:54,995 [wrapper] pandaids: 6677601776
[2025-06-04 21:03:55] 2025-06-05 01:03:55,111 [wrapper] cleanup supervisor_pilot 2437730 2027302
[2025-06-04 21:03:55] 2025-06-05 01:03:55,114 [wrapper] Test setup, not cleaning
[2025-06-04 21:03:55] 2025-06-05 01:03:55,118 [wrapper] apfmon messages muted
[2025-06-04 21:03:55] 2025-06-05 01:03:55,120 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:03:55] 2025-06-05 01:03:55,122 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:03:55]  *** Error codes and diagnostics ***
[2025-06-04 21:03:55]     "exeErrorCode": 0,
[2025-06-04 21:03:55]     "exeErrorDiag": "",
[2025-06-04 21:03:55]     "pilotErrorCode": 0,
[2025-06-04 21:03:55]     "pilotErrorDiag": "",
[2025-06-04 21:03:55]  *** Listing of results directory ***
[2025-06-04 21:03:55] total 394360
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:50 queuedata.json
[2025-06-04 21:03:55] -rwx------. 1 boincer umatlas     37140 Jun  3 07:50 runpilot2-wrapper.sh
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 07:50 pilot3.tar.gz
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas       100 Jun  4 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:03:55] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 19:17 run_atlas
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas       105 Jun  4 19:17 job.xml
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas 214628665 Jun  4 19:17 EVNT.45006593._001261.pool.root.1
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:17 start_atlas.sh
[2025-06-04 21:03:55] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 19:17 shared
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas    508874 Jun  4 19:17 input.tar.gz
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas         0 Jun  4 19:17 boinc_lockfile
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 19:17 pandaJob.out
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas    987117 Jun  4 19:17 agis_schedconf.cvmfs.json
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas   1598969 Jun  4 19:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:03:55] drwx------. 4 boincer umatlas      4096 Jun  4 19:18 pilot3
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas      6930 Jun  4 21:02 init_data.xml
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas        95 Jun  4 21:02 pilot_heartbeat.json
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas       529 Jun  4 21:02 boinc_task_state.xml
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas 183521528 Jun  4 21:02 HITS.45006595._031379.pool.root.1
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas      1036 Jun  4 21:03 memory_monitor_summary.json
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas    331203 Jun  4 21:03 log.45006595._031379.job.log.tgz.1
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas      7694 Jun  4 21:03 heartbeat.json
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 21:03 boinc_mmap_file
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas        27 Jun  4 21:03 wrapper_checkpoint.txt
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas      4353 Jun  4 21:03 pilotlog.txt
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas    587327 Jun  4 21:03 log.45006595._031379.job.log.1
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas       357 Jun  4 21:03 output.list
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas       620 Jun  4 21:03 runtime_log
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas    942080 Jun  4 21:03 result.tar.gz
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 21:03 runtime_log.err
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas       653 Jun  4 21:03 kwmKDmTLfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2sjKDmk6wXSn.diag
[2025-06-04 21:03:55] -rw-r--r--. 1 boincer umatlas     21193 Jun  4 21:03 stderr.txt
[2025-06-04 21:03:55] HITS file was successfully produced:
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas 183521528 Jun  4 21:02 shared/HITS.pool.root.1
[2025-06-04 21:03:55]  *** Contents of shared directory: ***
[2025-06-04 21:03:55] total 390268
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas 214628665 Jun  4 19:17 ATLAS.root_0
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 19:17 start_atlas.sh
[2025-06-04 21:03:55] -rw-r--r--. 2 boincer umatlas    508874 Jun  4 19:17 input.tar.gz
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas 183521528 Jun  4 21:02 HITS.pool.root.1
[2025-06-04 21:03:55] -rw-------. 1 boincer umatlas    942080 Jun  4 21:03 result.tar.gz
21:03:56 (2019739): run_atlas exited; CPU time 28146.433576
21:03:56 (2019739): called boinc_finish(0)

</stderr_txt>
]]>

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