Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:23 (3794912): wrapper (7.7.26015): starting
13:43:23 (3794912): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 13:43:23] Arguments: --nthreads 4
[2025-06-05 13:43:23] Threads: 4
[2025-06-05 13:43:23] Checking for CVMFS
[2025-06-05 13:43:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 13:43:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 13:43:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 13:43:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 13:43:24] 2.12.7.0 277841 3868 57584 146818 1 187 4069648 6144000 917 130560 1 10260766 99.997 916606 3394 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-06-05 13:43:24] CVMFS is ok
[2025-06-05 13:43:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:43:24] Checking for apptainer binary...
[2025-06-05 13:43:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 13:43:24] Running /usr/bin/apptainer --version
[2025-06-05 13:43:24] apptainer version 1.4.0
[2025-06-05 13:43:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:43:24] Ryzen8
[2025-06-05 13:43:24] apptainer works
[2025-06-05 13:43:24] Set ATHENA_PROC_NUMBER=4
[2025-06-05 13:43:24] Set ATHENA_CORE_NUMBER=4
[2025-06-05 13:43:24] Starting ATLAS job with PandaID=6668688332
[2025-06-05 13:43:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:08:19]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:08:19]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-05 15:08:19]  is_altstaged=None
[2025-06-05 15:08:19]  is_tar=False
[2025-06-05 15:08:19]  lfn=log.44871837._087020.job.log.tgz.1
[2025-06-05 15:08:19]  mtime=0
[2025-06-05 15:08:19]  protocol_id=None
[2025-06-05 15:08:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 15:08:19]  replicas=None
[2025-06-05 15:08:19]  scope=mc23_13p6TeV
[2025-06-05 15:08:19]  status=None
[2025-06-05 15:08:19]  status_code=0
[2025-06-05 15:08:19]  storage_token=
[2025-06-05 15:08:19]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6668688332/log.44871837._087020.job.log.tgz.1
[2025-06-05 15:08:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/3d/log.44871837._087020.job.log.tgz.1
[2025-06-05 15:08:19]  workdir=None
[2025-06-05 15:08:19] ]
[2025-06-05 15:08:19] 2025-06-05 13:07:56,955 | INFO     | transferring file log.44871837._087020.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6668688332/log.44871837._087020.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-05 15:08:19] 2025-06-05 13:07:56,956 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6668688332/log.44871837._087020.job.log.tgz.1 /var/lib/boinc/slots/0/log.44871837._087020.job
[2025-06-05 15:08:19] 2025-06-05 13:07:56,963 | INFO     | adding to output.list: log.44871837._087020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/3d/log.44871837._087020.job.log.tg
[2025-06-05 15:08:19] 2025-06-05 13:07:56,963 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 15:08:19] 2025-06-05 13:07:56,963 | INFO     | summary of transferred files:
[2025-06-05 15:08:19] 2025-06-05 13:07:56,963 | INFO     |  -- lfn=log.44871837._087020.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 15:08:19] 2025-06-05 13:07:56,964 | INFO     | stage-out finished correctly
[2025-06-05 15:08:19] 2025-06-05 13:07:57,504 | WARNING  | process 3805027 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 15:08:19] 2025-06-05 13:07:57,504 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6668688332/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:08:19] 2025-06-05 13:07:57,534 | INFO     | number of running child processes to parent process 3805027: 1
[2025-06-05 15:08:19] 2025-06-05 13:07:57,534 | INFO     | maximum number of monitored processes: 6
[2025-06-05 15:08:19] 2025-06-05 13:07:59,740 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 15:08:19] 2025-06-05 13:08:00,037 | INFO     | monitor loop #389: job 0:6668688332 is in state 'finished'
[2025-06-05 15:08:19] 2025-06-05 13:08:00,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 15:08:19] 2025-06-05 13:08:00,313 | INFO     | job 6668688332 has state=finished
[2025-06-05 15:08:19] 2025-06-05 13:08:00,313 | INFO     | preparing for final server update for job 6668688332 in state='finished'
[2025-06-05 15:08:19] 2025-06-05 13:08:00,313 | INFO     | this job has now completed (state=finished)
[2025-06-05 15:08:19] 2025-06-05 13:08:00,313 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 15:08:19] 2025-06-05 13:08:00,314 | INFO     | log transfer has been attempted: DONE
[2025-06-05 15:08:19] 2025-06-05 13:08:00,314 | INFO     | job 6668688332 has finished - writing final server update
[2025-06-05 15:08:19] 2025-06-05 13:08:00,314 | INFO     | total number of processed events: 400 (read)
[2025-06-05 15:08:19] 2025-06-05 13:08:00,314 | INFO     | executing command: lscpu
[2025-06-05 15:08:19] 2025-06-05 13:08:00,323 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 15:08:19] 2025-06-05 13:08:01,562 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 15:08:19] 2025-06-05 13:08:01,562 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6668688332/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 15:08:19] 2025-06-05 13:08:01,563 | INFO     | extracted standard info from prmon json
[2025-06-05 15:08:19] 2025-06-05 13:08:01,563 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 15:08:19] 2025-06-05 13:08:01,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 15:08:19] 2025-06-05 13:08:01,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:08:19] 2025-06-05 13:08:01,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | sum of square deviations: 136095575.0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | sum of deviations: -2965740242.5
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | mean x: 1749126416.5
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | mean y: 2420159.8815789474
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | -- intersect: 38118682225.22695
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | intersect: 38118682225.22695
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | chi2: 0.011872199176034114
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | -- intersect: 38118682225.22695
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | current memory leak: -21.79 B/s (using 76 data points, chi2=0.01)
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | ..............................
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . Timing measurements:
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . get job = 0 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . initial setup = 0 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . payload setup = 2 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . stage-in = 0 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . payload execution = 5051 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . stage-out = 0 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | . log creation = 0 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,564 | INFO     | ..............................
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | 
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | job summary report
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | --------------------------------------------------
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | PanDA job id: 6668688332
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | task id: 44871837
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | errors: (none)
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:08:19] 2025-06-05 13:08:01,592 | INFO     | pilot state: finished 
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | transexitcode: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | exeerrorcode: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | exeerrordiag: 
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | exitcode: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | exitmsg: OK
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | cpuconsumptiontime: 19608 s
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | nevents: 400
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | neventsw: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | pid: 3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | pgrp: 3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | corecount: 4
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | event service: False
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | sizes: {0: 2397392, 1: 2397598, 10: 2397626, 5057: 2432911, 5060: 2432911, 5061: 2433081}
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | --------------------------------------------------
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | 
[2025-06-05 15:08:19] 2025-06-05 13:08:01,593 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-05 15:08:19] 2025-06-05 13:08:01,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | job 6668688332 has completed (purged errors)
[2025-06-05 15:08:19] 2025-06-05 13:08:01,601 | INFO     | overall cleanup function is called
[2025-06-05 15:08:19] 2025-06-05 13:08:02,607 | INFO     | --- collectZombieJob: --- 10, [3805027]
[2025-06-05 15:08:19] 2025-06-05 13:08:02,607 | INFO     | zombie collector waiting for pid 3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:02,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:08:19] 2025-06-05 13:08:02,607 | INFO     | collected zombie processes
[2025-06-05 15:08:19] 2025-06-05 13:08:02,607 | INFO     | will attempt to kill all subprocesses of pid=3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:02,643 | INFO     | process IDs to be killed: [3805027] (in reverse order)
[2025-06-05 15:08:19] 2025-06-05 13:08:02,662 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:08:19] 2025-06-05 13:08:02,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:08:19] 2025-06-05 13:08:02,664 | INFO     | did not find any defunct processes belonging to 3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | did not find any defunct processes belonging to 3805027
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | ready for new job
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | **************************************
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | **************************************
[2025-06-05 15:08:19] 2025-06-05 13:08:02,666 | INFO     | 
[2025-06-05 15:08:19] 2025-06-05 13:08:02,667 | INFO     | architecture information:
[2025-06-05 15:08:19] 2025-06-05 13:08:02,667 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:08:19] 2025-06-05 13:08:02,673 | INFO     | cat /etc/os-release:
[2025-06-05 15:08:19] NAME="CentOS Linux"
[2025-06-05 15:08:19] VERSION="7 (Core)"
[2025-06-05 15:08:19] ID="centos"
[2025-06-05 15:08:19] ID_LIKE="rhel fedora"
[2025-06-05 15:08:19] VERSION_ID="7"
[2025-06-05 15:08:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:08:19] ANSI_COLOR="0;31"
[2025-06-05 15:08:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:08:19] HOME_URL="https://www.centos.org/"
[2025-06-05 15:08:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:08:19] 
[2025-06-05 15:08:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:08:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:08:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:08:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:08:19] 
[2025-06-05 15:08:19] 2025-06-05 13:08:02,673 | INFO     | **************************************
[2025-06-05 15:08:19] 2025-06-05 13:08:03,176 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | INFO     | sufficient remaining disk space (111527591936 B)
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | INFO     | update_server=False
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:08:19] 2025-06-05 13:08:03,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:08:19] 2025-06-05 13:08:03,183 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 15:08:19] 2025-06-05 13:08:03,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:08:19] 2025-06-05 13:08:03,183 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:08:19] 2025-06-05 13:08:03,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:08:19] 2025-06-05 13:08:03,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:08:19] 2025-06-05 13:08:03,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:08:19] 2025-06-05 13:08:03,545 | INFO     | aborting loop
[2025-06-05 15:08:19] 2025-06-05 13:08:03,674 | INFO     | all job control threads have been joined
[2025-06-05 15:08:19] 2025-06-05 13:08:03,947 | INFO     | all data control threads have been joined
[2025-06-05 15:08:19] 2025-06-05 13:08:04,187 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,188 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,222 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,222 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,301 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,550 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,630 | INFO     | all payload control threads have been joined
[2025-06-05 15:08:19] 2025-06-05 13:08:04,679 | INFO     | [job] control thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,765 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:04,953 | INFO     | [data] control thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,188 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,193 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,623 | INFO     | [job] validate thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,635 | INFO     | [payload] control thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,720 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:05,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:08:19] 2025-06-05 13:08:09,776 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:13,475 | INFO     | job.realtimelogging is not enabled
[2025-06-05 15:08:19] 2025-06-05 13:08:14,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:08:19] 2025-06-05 13:08:14,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136374376159040)>', '<ExcThread(monitor, started 136373667362560)>']
[2025-06-05 15:08:19] 2025-06-05 13:08:15,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:08:19] 2025-06-05 13:08:15,240 | INFO     | [monitor] control thread has ended
[2025-06-05 15:08:19] 2025-06-05 13:08:19,832 | INFO     | all workflow threads have been joined
[2025-06-05 15:08:19] 2025-06-05 13:08:19,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:08:19] 2025-06-05 13:08:19,832 | INFO     | traces error code: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:19,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:08:19] 2025-06-05 13:08:19,871 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:08:19] 2025-06-05 13:08:19,872 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:08:19] 2025-06-05 13:08:19,873 [wrapper] pilotpid: 3798545
[2025-06-05 15:08:19] 2025-06-05 13:08:19,874 [wrapper] Pilot exit status: 0
[2025-06-05 15:08:19] 2025-06-05 13:08:19,878 [wrapper] pandaids: 6668688332
[2025-06-05 15:08:19] 2025-06-05 13:08:19,890 [wrapper] cleanup supervisor_pilot 3822766 3798546
[2025-06-05 15:08:19] 2025-06-05 13:08:19,891 [wrapper] Test setup, not cleaning
[2025-06-05 15:08:19] 2025-06-05 13:08:19,892 [wrapper] apfmon messages muted
[2025-06-05 15:08:19] 2025-06-05 13:08:19,894 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:08:19] 2025-06-05 13:08:19,895 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:08:19]  *** Error codes and diagnostics ***
[2025-06-05 15:08:19]     "exeErrorCode": 0,
[2025-06-05 15:08:19]     "exeErrorDiag": "",
[2025-06-05 15:08:19]     "pilotErrorCode": 0,
[2025-06-05 15:08:19]     "pilotErrorDiag": "",
[2025-06-05 15:08:19]  *** Listing of results directory ***
[2025-06-05 15:08:19] insgesamt 415672
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc    495897 28. Mai 18:21 pilot3.tar.gz
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc      5111 28. Mai 18:27 queuedata.json
[2025-06-05 15:08:19] -rwx------ 1 boinc boinc     37140 28. Mai 18:28 runpilot2-wrapper.sh
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc       100  5. Jun 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:08:19] -rwxr-xr-x 1 boinc boinc      7986  5. Jun 13:43 run_atlas
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc       105  5. Jun 13:43 job.xml
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc     15093  5. Jun 13:43 start_atlas.sh
[2025-06-05 15:08:19] drwxrwx--x 2 boinc boinc      4096  5. Jun 13:43 shared
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc    508880  5. Jun 13:43 input.tar.gz
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc      9602  5. Jun 13:43 init_data.xml
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc 222130299  5. Jun 13:43 EVNT.44871834._003389.pool.root.1
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc         0  5. Jun 13:43 boinc_lockfile
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc      2559  5. Jun 13:43 pandaJob.out
[2025-06-05 15:08:19] -rw------- 1 boinc boinc    982836  5. Jun 13:43 agis_schedconf.cvmfs.json
[2025-06-05 15:08:19] -rw------- 1 boinc boinc   1598969  5. Jun 13:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:08:19] drwx------ 4 boinc boinc      4096  5. Jun 13:43 pilot3
[2025-06-05 15:08:19] -rw------- 1 boinc boinc 198166692  5. Jun 15:07 HITS.44871837._087020.pool.root.1
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc        27  5. Jun 15:07 wrapper_checkpoint.txt
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc      8192  5. Jun 15:07 boinc_mmap_file
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc       529  5. Jun 15:07 boinc_task_state.xml
[2025-06-05 15:08:19] -rw------- 1 boinc boinc      1026  5. Jun 15:07 memory_monitor_summary.json
[2025-06-05 15:08:19] -rw------- 1 boinc boinc        95  5. Jun 15:07 pilot_heartbeat.json
[2025-06-05 15:08:19] -rw------- 1 boinc boinc    256436  5. Jun 15:07 log.44871837._087020.job.log.tgz.1
[2025-06-05 15:08:19] -rw------- 1 boinc boinc      7667  5. Jun 15:08 heartbeat.json
[2025-06-05 15:08:19] -rw------- 1 boinc boinc      4549  5. Jun 15:08 pilotlog.txt
[2025-06-05 15:08:19] -rw------- 1 boinc boinc    506342  5. Jun 15:08 log.44871837._087020.job.log.1
[2025-06-05 15:08:19] -rw------- 1 boinc boinc       357  5. Jun 15:08 output.list
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc       620  5. Jun 15:08 runtime_log
[2025-06-05 15:08:19] -rw------- 1 boinc boinc    778240  5. Jun 15:08 result.tar.gz
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc      8619  5. Jun 15:08 runtime_log.err
[2025-06-05 15:08:19] -rw------- 1 boinc boinc       639  5. Jun 15:08 FGxKDmSoYe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmukTKDmCB16Ln.diag
[2025-06-05 15:08:19] -rw-r--r-- 1 boinc boinc     21022  5. Jun 15:08 stderr.txt
[2025-06-05 15:08:19] HITS file was successfully produced:
[2025-06-05 15:08:19] -rw------- 1 boinc boinc 198166692  5. Jun 15:07 shared/HITS.pool.root.1
[2025-06-05 15:08:19]  *** Contents of shared directory: ***
[2025-06-05 15:08:19] insgesamt 411732
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc     15093  5. Jun 13:43 start_atlas.sh
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc    508880  5. Jun 13:43 input.tar.gz
[2025-06-05 15:08:19] -rw-r--r-- 2 boinc boinc 222130299  5. Jun 13:43 ATLAS.root_0
[2025-06-05 15:08:19] -rw------- 1 boinc boinc 198166692  5. Jun 15:07 HITS.pool.root.1
[2025-06-05 15:08:19] -rw------- 1 boinc boinc    778240  5. Jun 15:08 result.tar.gz
15:08:21 (3794912): run_atlas exited; CPU time 19636.898877
15:08:21 (3794912): called boinc_finish(0)

</stderr_txt>
]]>

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