Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:10:23 (27196): wrapper (7.7.26015): starting
19:10:23 (27196): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 19:10:23] Arguments: --nthreads 12
[2025-06-04 19:10:23] Threads: 12
[2025-06-04 19:10:23] Checking for CVMFS
[2025-06-04 19:10:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:10:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:10:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:10:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:10:24] 2.11.2.0 2916 36277 87764 146797 1 55 11514494 20275201 1 130560 0 16637011 99.983 6804944 8089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 19:10:24] CVMFS is ok
[2025-06-04 19:10:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:10:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:10:24] Further information can be found at the LHC@home message board.
[2025-06-04 19:10:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:10:24] Checking for apptainer binary...
[2025-06-04 19:10:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:10:24] Running /usr/bin/apptainer --version
[2025-06-04 19:10:24] apptainer version 1.3.2-1.el7
[2025-06-04 19:10:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:10:25] c-205-23.aglt2.org
[2025-06-04 19:10:25] apptainer works
[2025-06-04 19:10:25] Set ATHENA_PROC_NUMBER=12
[2025-06-04 19:10:25] Set ATHENA_CORE_NUMBER=12
[2025-06-04 19:10:25] Starting ATLAS job with PandaID=6680155047
[2025-06-04 19:10:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:13:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:13:08]  is_tar=False
[2025-06-04 20:13:08]  lfn=log.45006595._056981.job.log.tgz.1
[2025-06-04 20:13:08]  mtime=0
[2025-06-04 20:13:08]  protocol_id=None
[2025-06-04 20:13:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 20:13:08]  replicas=None
[2025-06-04 20:13:08]  scope=mc23_13p6TeV
[2025-06-04 20:13:08]  status=None
[2025-06-04 20:13:08]  status_code=0
[2025-06-04 20:13:08]  storage_token=
[2025-06-04 20:13:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6680155047/log.45006595._056981.job.log.tgz.1
[2025-06-04 20:13:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/f5/log.45006595._056981.job.log.tgz.1
[2025-06-04 20:13:08]  workdir=None
[2025-06-04 20:13:08] ]
[2025-06-04 20:13:08] 2025-06-05 00:12:27,711 | INFO     | transferring file log.45006595._056981.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6680155047/log.45006595._056981.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 20:13:08] 2025-06-05 00:12:27,711 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6680155047/log.45006595._056981.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056981.job
[2025-06-04 20:13:08] 2025-06-05 00:12:27,733 | INFO     | adding to output.list: log.45006595._056981.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/f5/log.45006595._056981.job.log.tg
[2025-06-04 20:13:08] 2025-06-05 00:12:27,734 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 20:13:08] 2025-06-05 00:12:27,734 | INFO     | summary of transferred files:
[2025-06-04 20:13:08] 2025-06-05 00:12:27,734 | INFO     |  -- lfn=log.45006595._056981.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 20:13:08] 2025-06-05 00:12:27,734 | INFO     | stage-out finished correctly
[2025-06-04 20:13:08] 2025-06-05 00:12:27,820 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 20:13:08] 2025-06-05 00:12:29,495 | INFO     | monitor loop #281: job 0:6680155047 is in state 'finished'
[2025-06-04 20:13:08] 2025-06-05 00:12:29,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:13:08] 2025-06-05 00:12:30,896 | INFO     | job 6680155047 has state=finished
[2025-06-04 20:13:08] 2025-06-05 00:12:30,896 | INFO     | preparing for final server update for job 6680155047 in state='finished'
[2025-06-04 20:13:08] 2025-06-05 00:12:30,897 | INFO     | this job has now completed (state=finished)
[2025-06-04 20:13:08] 2025-06-05 00:12:30,897 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 20:13:08] 2025-06-05 00:12:30,897 | INFO     | log transfer has been attempted: DONE
[2025-06-04 20:13:08] 2025-06-05 00:12:30,897 | INFO     | job 6680155047 has finished - writing final server update
[2025-06-04 20:13:08] 2025-06-05 00:12:30,898 | INFO     | total number of processed events: 400 (read)
[2025-06-04 20:13:08] 2025-06-05 00:12:30,899 | INFO     | executing command: lscpu
[2025-06-04 20:13:08] 2025-06-05 00:12:30,925 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 20:13:08] 2025-06-05 00:12:31,999 | INFO     | monitor loop #282: job 0:6680155047 is in state 'finished'
[2025-06-04 20:13:08] 2025-06-05 00:12:31,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:13:08] 2025-06-05 00:12:34,502 | INFO     | monitor loop #283: job 0:6680155047 is in state 'finished'
[2025-06-04 20:13:08] 2025-06-05 00:12:34,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,575 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 20:13:08] 2025-06-05 00:12:35,579 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-06-04 20:13:08] 2025-06-05 00:12:35,581 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6680155047/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,582 | INFO     | extracted standard info from prmon json
[2025-06-04 20:13:08] 2025-06-05 00:12:35,582 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:13:08] 2025-06-05 00:12:35,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:13:08] 2025-06-05 00:12:35,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:13:08] 2025-06-05 00:12:35,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:13:08] 2025-06-05 00:12:35,585 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:13:08] 2025-06-05 00:12:35,585 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 20:13:08] 2025-06-05 00:12:35,585 | INFO     | sum of deviations: 1111343872.0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,585 | INFO     | mean x: 1749080590.5
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | mean y: 2658050.2592592593
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | -- intersect: -39821585631.63616
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | intersect: -39821585631.63616
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | chi2: 0.0009365558515807245
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | -- intersect: -39821585631.63616
[2025-06-04 20:13:08] 2025-06-05 00:12:35,586 | INFO     | current memory leak: 22.77 B/s (using 54 data points, chi2=0.00)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | could have reported an average CPU frequency of 1908 MHz (6 samples)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | ..............................
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | . Timing measurements:
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | . get job = 0 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | . initial setup = 2 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,587 | INFO     | . payload setup = 9 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,588 | INFO     | . stage-in = 0 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,588 | INFO     | . payload execution = 3678 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,588 | INFO     | . stage-out = 0 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,588 | INFO     | . log creation = 0 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,588 | INFO     | ..............................
[2025-06-04 20:13:08] 2025-06-05 00:12:35,818 | INFO     | 
[2025-06-04 20:13:08] 2025-06-05 00:12:35,818 | INFO     | job summary report
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | --------------------------------------------------
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | PanDA job id: 6680155047
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | task id: 45006595
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | errors: (none)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:13:08] 2025-06-05 00:12:35,819 | INFO     | pilot state: finished 
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | transexitcode: 0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | exeerrorcode: 0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | exeerrordiag: 
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | exitcode: 0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | exitmsg: OK
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | cpuconsumptiontime: 40126 s
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | nevents: 400
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | neventsw: 0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | pid: 5865
[2025-06-04 20:13:08] 2025-06-05 00:12:35,820 | INFO     | pgrp: 5865
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | corecount: 12
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | event service: False
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | sizes: {0: 2397624, 5: 2397886, 11: 2397942, 3691: 2423633, 3693: 2432630, 3701: 2432768}
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | --------------------------------------------------
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | 
[2025-06-04 20:13:08] 2025-06-05 00:12:35,821 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 20:13:08] 2025-06-05 00:12:35,845 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,845 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,845 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,845 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:13:08] 2025-06-05 00:12:35,848 | INFO     | job 6680155047 has completed (purged errors)
[2025-06-04 20:13:08] 2025-06-05 00:12:35,848 | INFO     | overall cleanup function is called
[2025-06-04 20:13:08] 2025-06-05 00:12:36,856 | INFO     | --- collectZombieJob: --- 10, [5865]
[2025-06-04 20:13:08] 2025-06-05 00:12:36,856 | INFO     | zombie collector waiting for pid 5865
[2025-06-04 20:13:08] 2025-06-05 00:12:36,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:13:08] 2025-06-05 00:12:36,857 | INFO     | collected zombie processes
[2025-06-04 20:13:08] 2025-06-05 00:12:36,857 | INFO     | will attempt to kill all subprocesses of pid=5865
[2025-06-04 20:13:08] 2025-06-05 00:12:36,946 | INFO     | process IDs to be killed: [5865] (in reverse order)
[2025-06-04 20:13:08] 2025-06-05 00:12:36,997 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:13:08] 2025-06-05 00:12:36,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:13:08] 2025-06-05 00:12:37,000 | INFO     | did not find any defunct processes belonging to 5865
[2025-06-04 20:13:08] 2025-06-05 00:12:37,002 | INFO     | did not find any defunct processes belonging to 5865
[2025-06-04 20:13:08] 2025-06-05 00:12:37,002 | INFO     | ready for new job
[2025-06-04 20:13:08] 2025-06-05 00:12:37,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:13:08] 2025-06-05 00:12:37,003 | INFO     | ***************************************
[2025-06-04 20:13:08] 2025-06-05 00:12:37,004 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 20:13:08] 2025-06-05 00:12:37,004 | INFO     | ***************************************
[2025-06-04 20:13:08] 2025-06-05 00:12:37,004 | INFO     | 
[2025-06-04 20:13:08] 2025-06-05 00:12:37,004 | INFO     | architecture information:
[2025-06-04 20:13:08] 2025-06-05 00:12:37,005 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:13:08] 2025-06-05 00:12:37,022 | INFO     | cat /etc/os-release:
[2025-06-04 20:13:08] NAME="CentOS Linux"
[2025-06-04 20:13:08] VERSION="7 (Core)"
[2025-06-04 20:13:08] ID="centos"
[2025-06-04 20:13:08] ID_LIKE="rhel fedora"
[2025-06-04 20:13:08] VERSION_ID="7"
[2025-06-04 20:13:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:13:08] ANSI_COLOR="0;31"
[2025-06-04 20:13:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:13:08] HOME_URL="https://www.centos.org/"
[2025-06-04 20:13:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:13:08] 
[2025-06-04 20:13:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:13:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:13:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:13:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:13:08] 
[2025-06-04 20:13:08] 2025-06-05 00:12:37,022 | INFO     | ***************************************
[2025-06-04 20:13:08] 2025-06-05 00:12:37,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 20:13:08] 2025-06-05 00:12:37,541 | INFO     | sufficient remaining disk space (29426188288 B)
[2025-06-04 20:13:08] 2025-06-05 00:12:37,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:13:08] 2025-06-05 00:12:37,541 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:13:08] 2025-06-05 00:12:37,541 | INFO     | update_server=False
[2025-06-04 20:13:08] 2025-06-05 00:12:37,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:13:08] 2025-06-05 00:12:37,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:13:08] 2025-06-05 00:12:38,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:13:08] 2025-06-05 00:12:38,010 | INFO     | aborting loop
[2025-06-04 20:13:08] 2025-06-05 00:12:38,213 | INFO     | all data control threads have been joined
[2025-06-04 20:13:08] 2025-06-05 00:12:38,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:13:08] 2025-06-05 00:12:38,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:13:08] 2025-06-05 00:12:38,450 | INFO     | all payload control threads have been joined
[2025-06-04 20:13:08] 2025-06-05 00:12:38,545 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,547 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,574 | INFO     | [job] validate thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,659 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,806 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,977 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:38,978 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,016 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,218 | INFO     | [data] control thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,230 | INFO     | all job control threads have been joined
[2025-06-04 20:13:08] 2025-06-05 00:12:39,332 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,456 | INFO     | [payload] control thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:39,681 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:40,235 | INFO     | [job] control thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:40,335 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:42,419 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:13:08] 2025-06-05 00:12:43,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225988777792)>', '<ExcThread(monitor, started 140225028282112)>']
[2025-06-04 20:13:08] 2025-06-05 00:12:49,014 | INFO     | all workflow threads have been joined
[2025-06-04 20:13:08] 2025-06-05 00:12:49,023 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:13:08] 2025-06-05 00:12:49,024 | INFO     | traces error code: 0
[2025-06-04 20:13:08] 2025-06-05 00:12:49,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:13:08] 2025-06-05 00:13:08,386 | INFO     | PID=31337 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 20:13:08] 2025-06-05 00:13:08,386 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:13:08] 2025-06-05 00:13:08,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:13:08] 2025-06-05 00:13:08,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:13:08] 2025-06-05 00:13:08,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:13:08] 2025-06-05 00:13:08,387 | CRITICAL | thread 'MainThread' is not alive
[2025-06-04 20:13:08] 2025-06-05 00:13:08,387 | INFO     | [monitor] control thread has ended
[2025-06-04 20:13:08] 2025-06-05 00:13:08,477 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:13:08] 2025-06-05 00:13:08,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:13:08] 2025-06-05 00:13:08,486 [wrapper] pilotpid: 31337
[2025-06-04 20:13:08] 2025-06-05 00:13:08,490 [wrapper] Pilot exit status: 0
[2025-06-04 20:13:08] 2025-06-05 00:13:08,505 [wrapper] pandaids: 6680155047
[2025-06-04 20:13:08] 2025-06-05 00:13:08,546 [wrapper] cleanup supervisor_pilot 20087 31338
[2025-06-04 20:13:08] 2025-06-05 00:13:08,550 [wrapper] Test setup, not cleaning
[2025-06-04 20:13:08] 2025-06-05 00:13:08,554 [wrapper] apfmon messages muted
[2025-06-04 20:13:08] 2025-06-05 00:13:08,558 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:13:08] 2025-06-05 00:13:08,562 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:13:08]  *** Error codes and diagnostics ***
[2025-06-04 20:13:08]     "exeErrorCode": 0,
[2025-06-04 20:13:08]     "exeErrorDiag": "",
[2025-06-04 20:13:08]     "pilotErrorCode": 0,
[2025-06-04 20:13:08]     "pilotErrorDiag": "",
[2025-06-04 20:13:08]  *** Listing of results directory ***
[2025-06-04 20:13:08] total 386484
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-04 20:13:08] -rwx------ 1 boincer umatlas     37140 Jun  4 19:09 runpilot2-wrapper.sh
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 19:09 queuedata.json
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas       100 Jun  4 19:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:13:08] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 19:10 run_atlas
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas       105 Jun  4 19:10 job.xml
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas 214126957 Jun  4 19:10 EVNT.45006593._000632.pool.root.1
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:10 start_atlas.sh
[2025-06-04 20:13:08] drwxrwx--x 2 boincer umatlas      4096 Jun  4 19:10 shared
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas    564122 Jun  4 19:10 input.tar.gz
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas         0 Jun  4 19:10 boinc_lockfile
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas      2520 Jun  4 19:10 pandaJob.out
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas    987032 Jun  4 19:10 agis_schedconf.cvmfs.json
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas   1598969 Jun  4 19:10 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:13:08] drwx------ 6 boincer umatlas      4096 Jun  4 19:10 pilot3
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas 176267274 Jun  4 20:11 HITS.45006595._056981.pool.root.1
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas       529 Jun  4 20:12 boinc_task_state.xml
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas      1047 Jun  4 20:12 memory_monitor_summary.json
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 20:12 init_data.xml
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas        95 Jun  4 20:12 pilot_heartbeat.json
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas    341316 Jun  4 20:12 log.45006595._056981.job.log.tgz.1
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas      7771 Jun  4 20:12 heartbeat.json
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 20:12 boinc_mmap_file
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas        27 Jun  4 20:12 wrapper_checkpoint.txt
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas       815 Jun  4 20:13 pilotlog.txt
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas    372261 Jun  4 20:13 log.45006595._056981.job.log.1
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas       357 Jun  4 20:13 output.list
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas       620 Jun  4 20:13 runtime_log
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas    737280 Jun  4 20:13 result.tar.gz
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 20:13 runtime_log.err
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas       659 Jun  4 20:13 9uIMDmAQCh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk3nKDmE9Yaxn.diag
[2025-06-04 20:13:08] -rw-r--r-- 1 boincer umatlas     21534 Jun  4 20:13 stderr.txt
[2025-06-04 20:13:08] HITS file was successfully produced:
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas 176267274 Jun  4 20:11 shared/HITS.pool.root.1
[2025-06-04 20:13:08]  *** Contents of shared directory: ***
[2025-06-04 20:13:08] total 382544
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas 214126957 Jun  4 19:10 ATLAS.root_0
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 19:10 start_atlas.sh
[2025-06-04 20:13:08] -rw-r--r-- 2 boincer umatlas    564122 Jun  4 19:10 input.tar.gz
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas 176267274 Jun  4 20:11 HITS.pool.root.1
[2025-06-04 20:13:08] -rw------- 1 boincer umatlas    737280 Jun  4 20:13 result.tar.gz
20:13:10 (27196): run_atlas exited; CPU time 40094.529341
20:13:10 (27196): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN