Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:53:41 (4170497): wrapper (7.7.26015): starting
18:53:41 (4170497): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:53:41] Arguments: --nthreads 8
[2025-06-04 18:53:41] Threads: 8
[2025-06-04 18:53:41] Checking for CVMFS
[2025-06-04 18:53:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:53:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:53:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:53:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:53:41] 2.12.6.0 65732 354 122808 146797 1 554 30071325 40960000 34439 16776704 0 2849642 99.882 1157165 36168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 18:53:41] CVMFS is ok
[2025-06-04 18:53:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:53:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:53:41] Further information can be found at the LHC@home message board.
[2025-06-04 18:53:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:53:41] Checking for apptainer binary...
[2025-06-04 18:53:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:53:41] Running /usr/bin/apptainer --version
[2025-06-04 18:53:41] apptainer version 1.4.1-1.el9
[2025-06-04 18:53:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:53:42] c8-16-2.aglt2.org
[2025-06-04 18:53:42] apptainer works
[2025-06-04 18:53:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:53:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:53:42] Starting ATLAS job with PandaID=6668439308
[2025-06-04 18:53:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:10:57]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:10:57]  lfn=log.44871837._083644.job.log.tgz.1
[2025-06-04 20:10:57]  mtime=0
[2025-06-04 20:10:57]  protocol_id=None
[2025-06-04 20:10:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 20:10:57]  replicas=None
[2025-06-04 20:10:57]  scope=mc23_13p6TeV
[2025-06-04 20:10:57]  status=None
[2025-06-04 20:10:57]  status_code=0
[2025-06-04 20:10:57]  storage_token=
[2025-06-04 20:10:57]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6668439308/log.44871837._083644.job.log.tgz.1
[2025-06-04 20:10:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/60/log.44871837._083644.job.log.tgz.1
[2025-06-04 20:10:57]  workdir=None
[2025-06-04 20:10:57] ]
[2025-06-04 20:10:57] 2025-06-05 00:10:38,283 | INFO     | transferring file log.44871837._083644.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6668439308/log.44871837._083644.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 20:10:57] 2025-06-05 00:10:38,283 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6668439308/log.44871837._083644.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._083644.job
[2025-06-04 20:10:57] 2025-06-05 00:10:38,301 | INFO     | adding to output.list: log.44871837._083644.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/60/log.44871837._083644.job.log.tg
[2025-06-04 20:10:57] 2025-06-05 00:10:38,302 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 20:10:57] 2025-06-05 00:10:38,302 | INFO     | summary of transferred files:
[2025-06-04 20:10:57] 2025-06-05 00:10:38,302 | INFO     |  -- lfn=log.44871837._083644.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 20:10:57] 2025-06-05 00:10:38,302 | INFO     | stage-out finished correctly
[2025-06-04 20:10:57] 2025-06-05 00:10:38,781 | WARNING  | process 3414 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 20:10:57] 2025-06-05 00:10:38,781 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668439308/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:10:57] 2025-06-05 00:10:39,157 | INFO     | number of running child processes to parent process 3414: 1
[2025-06-04 20:10:57] 2025-06-05 00:10:39,157 | INFO     | maximum number of monitored processes: 6
[2025-06-04 20:10:57] 2025-06-05 00:10:40,661 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 20:10:57] 2025-06-05 00:10:40,798 | INFO     | job 6668439308 has state=finished
[2025-06-04 20:10:57] 2025-06-05 00:10:40,798 | INFO     | preparing for final server update for job 6668439308 in state='finished'
[2025-06-04 20:10:57] 2025-06-05 00:10:40,799 | INFO     | this job has now completed (state=finished)
[2025-06-04 20:10:57] 2025-06-05 00:10:40,799 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 20:10:57] 2025-06-05 00:10:40,799 | INFO     | log transfer has been attempted: DONE
[2025-06-04 20:10:57] 2025-06-05 00:10:40,799 | INFO     | job 6668439308 has finished - writing final server update
[2025-06-04 20:10:57] 2025-06-05 00:10:40,799 | INFO     | total number of processed events: 400 (read)
[2025-06-04 20:10:57] 2025-06-05 00:10:40,818 | INFO     | executing command: lscpu
[2025-06-04 20:10:57] 2025-06-05 00:10:40,907 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 20:10:57] 2025-06-05 00:10:41,660 | INFO     | monitor loop #319: job 0:6668439308 is in state 'finished'
[2025-06-04 20:10:57] 2025-06-05 00:10:41,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:10:57] 2025-06-05 00:10:44,164 | INFO     | monitor loop #320: job 0:6668439308 is in state 'finished'
[2025-06-04 20:10:57] 2025-06-05 00:10:44,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 20:10:57] 2025-06-05 00:10:44,583 | INFO     | PID=4177673 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 20:10:57] 2025-06-05 00:10:44,583 | INFO     | .. there are 42 such processes running
[2025-06-04 20:10:57] 2025-06-05 00:10:44,988 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6668439308/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | INFO     | extracted standard info from prmon json
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:10:57] 2025-06-05 00:10:44,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:10:57] 2025-06-05 00:10:44,990 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:10:57] 2025-06-05 00:10:44,990 | INFO     | sum of square deviations: 101843770.0
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | sum of deviations: -3110216699.0
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | mean x: 1749080037.0
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | mean y: 2247437.0579710146
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | -- intersect: 53417571113.36078
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | intersect: 53417571113.36078
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | chi2: 0.04150981671641699
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | -- intersect: 53417571113.36078
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | current memory leak: -30.54 B/s (using 69 data points, chi2=0.04)
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | ..............................
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . Timing measurements:
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . get job = 0 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . initial setup = 2 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . payload setup = 5 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . stage-in = 0 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . payload execution = 4580 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,991 | INFO     | . stage-out = 0 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,992 | INFO     | . log creation = 0 s
[2025-06-04 20:10:57] 2025-06-05 00:10:44,992 | INFO     | ..............................
[2025-06-04 20:10:57] 2025-06-05 00:10:45,041 | INFO     | 
[2025-06-04 20:10:57] 2025-06-05 00:10:45,041 | INFO     | job summary report
[2025-06-04 20:10:57] 2025-06-05 00:10:45,041 | INFO     | --------------------------------------------------
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | PanDA job id: 6668439308
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | task id: 44871837
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | errors: (none)
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | pilot state: finished 
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | transexitcode: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | exeerrorcode: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | exeerrordiag: 
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | exitcode: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | exitmsg: OK
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | cpuconsumptiontime: 28780 s
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | nevents: 400
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | neventsw: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | pid: 3414
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | pgrp: 3414
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | corecount: 8
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | event service: False
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | sizes: {0: 2397392, 5: 2397598, 11: 2397654, 4590: 2423860, 4591: 2432801, 4594: 2432857, 4598: 2433155}
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | --------------------------------------------------
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | 
[2025-06-04 20:10:57] 2025-06-05 00:10:45,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | job 6668439308 has completed (purged errors)
[2025-06-04 20:10:57] 2025-06-05 00:10:45,062 | INFO     | overall cleanup function is called
[2025-06-04 20:10:57] 2025-06-05 00:10:46,073 | INFO     | --- collectZombieJob: --- 10, [3414]
[2025-06-04 20:10:57] 2025-06-05 00:10:46,073 | INFO     | zombie collector waiting for pid 3414
[2025-06-04 20:10:57] 2025-06-05 00:10:46,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:10:57] 2025-06-05 00:10:46,073 | INFO     | collected zombie processes
[2025-06-04 20:10:57] 2025-06-05 00:10:46,074 | INFO     | will attempt to kill all subprocesses of pid=3414
[2025-06-04 20:10:57] 2025-06-05 00:10:46,452 | INFO     | process IDs to be killed: [3414] (in reverse order)
[2025-06-04 20:10:57] 2025-06-05 00:10:46,602 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:10:57] 2025-06-05 00:10:46,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:10:57] 2025-06-05 00:10:46,623 | INFO     | did not find any defunct processes belonging to 3414
[2025-06-04 20:10:57] 2025-06-05 00:10:46,640 | INFO     | did not find any defunct processes belonging to 3414
[2025-06-04 20:10:57] 2025-06-05 00:10:46,640 | INFO     | ready for new job
[2025-06-04 20:10:57] 2025-06-05 00:10:46,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:10:57] 2025-06-05 00:10:46,642 | INFO     | **************************************
[2025-06-04 20:10:57] 2025-06-05 00:10:46,642 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:10:57] 2025-06-05 00:10:46,642 | INFO     | **************************************
[2025-06-04 20:10:57] 2025-06-05 00:10:46,642 | INFO     | 
[2025-06-04 20:10:57] 2025-06-05 00:10:46,659 | INFO     | architecture information:
[2025-06-04 20:10:57] 2025-06-05 00:10:46,660 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:10:57] 2025-06-05 00:10:46,673 | INFO     | cat /etc/os-release:
[2025-06-04 20:10:57] NAME="CentOS Linux"
[2025-06-04 20:10:57] VERSION="7 (Core)"
[2025-06-04 20:10:57] ID="centos"
[2025-06-04 20:10:57] ID_LIKE="rhel fedora"
[2025-06-04 20:10:57] VERSION_ID="7"
[2025-06-04 20:10:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:10:57] ANSI_COLOR="0;31"
[2025-06-04 20:10:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:10:57] HOME_URL="https://www.centos.org/"
[2025-06-04 20:10:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:10:57] 
[2025-06-04 20:10:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:10:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:10:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:10:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:10:57] 
[2025-06-04 20:10:57] 2025-06-05 00:10:46,674 | INFO     | **************************************
[2025-06-04 20:10:57] 2025-06-05 00:10:47,176 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | INFO     | sufficient remaining disk space (173298155520 B)
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | INFO     | update_server=False
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:10:57] 2025-06-05 00:10:47,193 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:10:57] 2025-06-05 00:10:47,194 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:10:57] 2025-06-05 00:10:47,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:10:57] 2025-06-05 00:10:47,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:10:57] 2025-06-05 00:10:47,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:10:57] 2025-06-05 00:10:47,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:10:57] 2025-06-05 00:10:47,674 | INFO     | aborting loop
[2025-06-04 20:10:57] 2025-06-05 00:10:47,684 | INFO     | all data control threads have been joined
[2025-06-04 20:10:57] 2025-06-05 00:10:47,725 | INFO     | all job control threads have been joined
[2025-06-04 20:10:57] 2025-06-05 00:10:48,198 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,295 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,411 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,481 | INFO     | all payload control threads have been joined
[2025-06-04 20:10:57] 2025-06-05 00:10:48,681 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,690 | INFO     | [data] control thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,730 | INFO     | [job] control thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,783 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:48,820 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:49,199 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:49,356 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:49,486 | INFO     | [payload] control thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:49,514 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:49,567 | INFO     | [job] validate thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:50,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:10:57] 2025-06-05 00:10:51,059 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:51,201 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:10:57] 2025-06-05 00:10:52,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487623739200)>', '<ExcThread(monitor, started 140487281329920)>']
[2025-06-04 20:10:57] 2025-06-05 00:10:52,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:10:57] 2025-06-05 00:10:52,220 | INFO     | [monitor] control thread has ended
[2025-06-04 20:10:57] 2025-06-05 00:10:57,146 | INFO     | all workflow threads have been joined
[2025-06-04 20:10:57] 2025-06-05 00:10:57,146 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:10:57] 2025-06-05 00:10:57,147 | INFO     | traces error code: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:57,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:10:57] 2025-06-05 00:10:57,271 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:10:57] 2025-06-05 00:10:57,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:10:57] 2025-06-05 00:10:57,276 [wrapper] pilotpid: 4177673
[2025-06-04 20:10:57] 2025-06-05 00:10:57,278 [wrapper] Pilot exit status: 0
[2025-06-04 20:10:57] 2025-06-05 00:10:57,295 [wrapper] pandaids: 6668439308
[2025-06-04 20:10:57] 2025-06-05 00:10:57,404 [wrapper] cleanup supervisor_pilot 1017413 4177674
[2025-06-04 20:10:57] 2025-06-05 00:10:57,409 [wrapper] Test setup, not cleaning
[2025-06-04 20:10:57] 2025-06-05 00:10:57,412 [wrapper] apfmon messages muted
[2025-06-04 20:10:57] 2025-06-05 00:10:57,416 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:10:57] 2025-06-05 00:10:57,419 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:10:57]  *** Error codes and diagnostics ***
[2025-06-04 20:10:57]     "exeErrorCode": 0,
[2025-06-04 20:10:57]     "exeErrorDiag": "",
[2025-06-04 20:10:57]     "pilotErrorCode": 0,
[2025-06-04 20:10:57]     "pilotErrorDiag": "",
[2025-06-04 20:10:57]  *** Listing of results directory ***
[2025-06-04 20:10:57] total 426024
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas    495897 May 28 07:30 pilot3.tar.gz
[2025-06-04 20:10:57] -rwx------. 1 boincer umatlas     37140 May 28 07:35 runpilot2-wrapper.sh
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas      5111 May 28 07:35 queuedata.json
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas       100 Jun  4 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:10:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 18:53 run_atlas
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas       105 Jun  4 18:53 job.xml
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas 223933503 Jun  4 18:53 EVNT.44871834._003263.pool.root.1
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 18:53 start_atlas.sh
[2025-06-04 20:10:57] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 18:53 shared
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas    508876 Jun  4 18:53 input.tar.gz
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas         0 Jun  4 18:53 boinc_lockfile
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas      2559 Jun  4 18:53 pandaJob.out
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas    987032 Jun  4 18:53 agis_schedconf.cvmfs.json
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas   1598969 Jun  4 18:53 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:10:57] drwx------. 4 boincer umatlas      4096 Jun  4 18:53 pilot3
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas      7158 Jun  4 20:01 init_data.xml
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas 207022250 Jun  4 20:10 HITS.44871837._083644.pool.root.1
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas       530 Jun  4 20:10 boinc_task_state.xml
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas        95 Jun  4 20:10 pilot_heartbeat.json
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas      1042 Jun  4 20:10 memory_monitor_summary.json
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas    291616 Jun  4 20:10 log.44871837._083644.job.log.tgz.1
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas      7696 Jun  4 20:10 heartbeat.json
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 20:10 boinc_mmap_file
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas        27 Jun  4 20:10 wrapper_checkpoint.txt
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas      4477 Jun  4 20:10 pilotlog.txt
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas    441360 Jun  4 20:10 log.44871837._083644.job.log.1
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas       357 Jun  4 20:10 output.list
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas       620 Jun  4 20:10 runtime_log
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas    747520 Jun  4 20:10 result.tar.gz
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 20:10 runtime_log.err
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas       654 Jun  4 20:10 7QdMDmOFUe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmURTKDmRHfRom.diag
[2025-06-04 20:10:57] -rw-r--r--. 1 boincer umatlas     21662 Jun  4 20:10 stderr.txt
[2025-06-04 20:10:57] HITS file was successfully produced:
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas 207022250 Jun  4 20:10 shared/HITS.pool.root.1
[2025-06-04 20:10:57]  *** Contents of shared directory: ***
[2025-06-04 20:10:57] total 422112
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas 223933503 Jun  4 18:53 ATLAS.root_0
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 18:53 start_atlas.sh
[2025-06-04 20:10:57] -rw-r--r--. 2 boincer umatlas    508876 Jun  4 18:53 input.tar.gz
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas 207022250 Jun  4 20:10 HITS.pool.root.1
[2025-06-04 20:10:57] -rw-------. 1 boincer umatlas    747520 Jun  4 20:10 result.tar.gz
20:10:58 (4170497): run_atlas exited; CPU time 28883.118671
20:10:58 (4170497): called boinc_finish(0)

</stderr_txt>
]]>

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