Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:37:13 (73994): wrapper (7.7.26015): starting
18:37:13 (73994): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:37:13] Arguments: --nthreads 8
[2025-06-04 18:37:13] Threads: 8
[2025-06-04 18:37:13] Checking for CVMFS
[2025-06-04 18:37:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:37:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:37:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:37:15] 2.11.2.0 12263 11745 307576 146797 0 564 15348716 18432000 23100 130560 0 92271846 99.301 122378850 60423 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 18:37:15] CVMFS is ok
[2025-06-04 18:37:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:37:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:37:15] Further information can be found at the LHC@home message board.
[2025-06-04 18:37:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:37:15] Checking for apptainer binary...
[2025-06-04 18:37:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:37:15] Running /usr/bin/apptainer --version
[2025-06-04 18:37:15] apptainer version 1.3.2-1.el7
[2025-06-04 18:37:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:37:24] c-212-14.aglt2.org
[2025-06-04 18:37:24] apptainer works
[2025-06-04 18:37:24] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:37:24] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:37:24] Starting ATLAS job with PandaID=6680114253
[2025-06-04 18:37:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:04 (73994): BOINC client no longer exists - exiting
20:00:04 (73994): timer handler: client dead, exiting
20:12:40 (12413): wrapper (7.7.26015): starting
20:12:40 (12413): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:12:40] Arguments: --nthreads 8
[2025-06-04 20:12:40] Threads: 8
[2025-06-04 20:12:40] This job has been restarted, cleaning up previous attempt
[2025-06-04 20:12:40] Checking for CVMFS
[2025-06-04 20:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:12:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:12:40] 2.11.2.0 12263 11840 259984 146798 1 458 17413425 18432000 21516 130560 0 92540432 99.301 122930819 60405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 20:12:40] CVMFS is ok
[2025-06-04 20:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 20:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 20:12:40] Further information can be found at the LHC@home message board.
[2025-06-04 20:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:12:40] Checking for apptainer binary...
[2025-06-04 20:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:12:40] Running /usr/bin/apptainer --version
[2025-06-04 20:12:40] apptainer version 1.3.2-1.el7
[2025-06-04 20:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:12:42] c-212-14.aglt2.org
[2025-06-04 20:12:42] apptainer works
[2025-06-04 20:12:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:12:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:12:42] Starting ATLAS job with PandaID=6680114253
[2025-06-04 20:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:13:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:13:10] 2025-06-05 02:12:53,686 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:13:10] 2025-06-05 02:12:53,686 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:13:10] 2025-06-05 02:12:53,686 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:13:10] 2025-06-05 02:12:53,686 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:13:10] 2025-06-05 02:12:53,713 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:13:10] 2025-06-05 02:12:53,713 | INFO     | sum of square deviations: 496597218.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | sum of deviations: 4208354681.000003
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | mean x: 1749085961.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | mean y: 2400435.1196581195
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | -- intersect: -14820022697.032764
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | intersect: -14820022697.032764
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | chi2: 3.210109057754681
[2025-06-04 22:13:10] 2025-06-05 02:12:53,714 | INFO     | sum of square deviations: 435610028.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | sum of deviations: 19179236187.999996
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | mean x: 1749085808.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | mean y: 2436870.4821428573
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | -- intersect: -77007107625.81772
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | intersect: -77007107625.81772
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | chi2: 1.5402827340331107
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | current chi2=1.5402827340331107 (change=52.01774437188544 %)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,715 | INFO     | sum of square deviations: 379832238.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | sum of deviations: 18340356136.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | mean x: 1749085656.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | mean y: 2434575.3644859814
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | -- intersect: -84452887101.1731
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | intersect: -84452887101.1731
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | chi2: 1.5414194629225209
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | current chi2=1.5414194629225209 (change=-0.07380001504228718 %)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,716 | INFO     | right removable region: 106
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | sum of square deviations: 435610028.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | sum of deviations: -13756772856.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | mean x: 1749086113.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | mean y: 2444532.8125
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | -- intersect: 55239419862.21855
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | intersect: 55239419862.21855
[2025-06-04 22:13:10] 2025-06-05 02:12:53,717 | INFO     | chi2: 1.742112045904559
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | current chi2=1.742112045904559 (change=45.730440475343734 %)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | sum of square deviations: 379832238.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | sum of deviations: -13842598728.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | mean x: 1749086266.0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | mean y: 2444751.7102803737
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | -- intersect: 63746110766.95217
[2025-06-04 22:13:10] 2025-06-05 02:12:53,718 | INFO     | intersect: 63746110766.95217
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | chi2: 1.7444259778553426
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | current chi2=1.7444259778553426 (change=-0.1328233712764554 %)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | left removable region: 20
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | sum of square deviations: 197203697.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | sum of deviations: -121815322.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | mean x: 1749086235.5
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | mean y: 2489902.61627907
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | -- intersect: 1082923518.0039594
[2025-06-04 22:13:10] 2025-06-05 02:12:53,719 | INFO     | intersect: 1082923518.0039594
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | chi2: 0.0004771910655515882
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | -- intersect: 1082923518.0039594
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | current memory leak: -0.62 B/s (using 86 data points, chi2=0.00)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | ..............................
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | . Timing measurements:
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | . get job = 0 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | . initial setup = 1 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,720 | INFO     | . payload setup = 12 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,721 | INFO     | . stage-in = 0 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,721 | INFO     | . payload execution = 7093 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,721 | INFO     | . stage-out = 3 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,721 | INFO     | . log creation = 1 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,721 | INFO     | ..............................
[2025-06-04 22:13:10] 2025-06-05 02:12:53,798 | INFO     | 
[2025-06-04 22:13:10] 2025-06-05 02:12:53,798 | INFO     | job summary report
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | --------------------------------------------------
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | PanDA job id: 6680114253
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | task id: 45006595
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | errors: (none)
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | pilot state: finished 
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | transexitcode: 0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | exeerrorcode: 0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | exeerrordiag: 
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | exitcode: 0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | exitmsg: OK
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | cpuconsumptiontime: 30735 s
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | nevents: 400
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | neventsw: 0
[2025-06-04 22:13:10] 2025-06-05 02:12:53,799 | INFO     | pid: 48415
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | pgrp: 48415
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | corecount: 8
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | event service: False
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | sizes: {0: 2397120, 1: 2397319, 8: 2397525, 12: 2397553, 7110: 2424775, 7111: 2424774, 7115: 2433899, 7118: 2433955, 7179: 2434125}
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | --------------------------------------------------
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | 
[2025-06-04 22:13:10] 2025-06-05 02:12:53,800 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 22:13:10] 2025-06-05 02:12:54,150 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,150 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,150 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,150 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:13:10] 2025-06-05 02:12:54,152 | INFO     | job 6680114253 has completed (purged errors)
[2025-06-04 22:13:10] 2025-06-05 02:12:54,152 | INFO     | overall cleanup function is called
[2025-06-04 22:13:10] 2025-06-05 02:12:55,175 | INFO     | --- collectZombieJob: --- 10, [48415]
[2025-06-04 22:13:10] 2025-06-05 02:12:55,175 | INFO     | zombie collector waiting for pid 48415
[2025-06-04 22:13:10] 2025-06-05 02:12:55,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:13:10] 2025-06-05 02:12:55,175 | INFO     | collected zombie processes
[2025-06-04 22:13:10] 2025-06-05 02:12:55,175 | INFO     | will attempt to kill all subprocesses of pid=48415
[2025-06-04 22:13:10] 2025-06-05 02:12:56,161 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-06-04 22:13:10] 2025-06-05 02:12:56,208 | INFO     | process IDs to be killed: [48415] (in reverse order)
[2025-06-04 22:13:10] 2025-06-05 02:12:56,912 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:13:10] 2025-06-05 02:12:56,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:13:10] 2025-06-05 02:12:56,926 | INFO     | did not find any defunct processes belonging to 48415
[2025-06-04 22:13:10] 2025-06-05 02:12:56,943 | INFO     | did not find any defunct processes belonging to 48415
[2025-06-04 22:13:10] 2025-06-05 02:12:56,943 | INFO     | ready for new job
[2025-06-04 22:13:10] 2025-06-05 02:12:56,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:13:10] 2025-06-05 02:12:56,945 | INFO     | **************************************
[2025-06-04 22:13:10] 2025-06-05 02:12:56,946 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:13:10] 2025-06-05 02:12:56,946 | INFO     | **************************************
[2025-06-04 22:13:10] 2025-06-05 02:12:56,946 | INFO     | 
[2025-06-04 22:13:10] 2025-06-05 02:12:56,950 | INFO     | architecture information:
[2025-06-04 22:13:10] 2025-06-05 02:12:56,961 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:13:10] 2025-06-05 02:12:57,086 | INFO     | cat /etc/os-release:
[2025-06-04 22:13:10] NAME="CentOS Linux"
[2025-06-04 22:13:10] VERSION="7 (Core)"
[2025-06-04 22:13:10] ID="centos"
[2025-06-04 22:13:10] ID_LIKE="rhel fedora"
[2025-06-04 22:13:10] VERSION_ID="7"
[2025-06-04 22:13:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:13:10] ANSI_COLOR="0;31"
[2025-06-04 22:13:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:13:10] HOME_URL="https://www.centos.org/"
[2025-06-04 22:13:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:13:10] 
[2025-06-04 22:13:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:13:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:13:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:13:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:13:10] 
[2025-06-04 22:13:10] 2025-06-05 02:12:57,086 | INFO     | **************************************
[2025-06-04 22:13:10] 2025-06-05 02:12:57,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 22:13:10] 2025-06-05 02:12:57,697 | INFO     | sufficient remaining disk space (104071168000 B)
[2025-06-04 22:13:10] 2025-06-05 02:12:57,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:13:10] 2025-06-05 02:12:57,697 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:13:10] 2025-06-05 02:12:57,698 | INFO     | update_server=False
[2025-06-04 22:13:10] 2025-06-05 02:12:57,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:13:10] 2025-06-05 02:12:57,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:13:10] 2025-06-05 02:12:57,698 | INFO     | aborting loop
[2025-06-04 22:13:10] 2025-06-05 02:12:57,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:13:10] 2025-06-05 02:12:57,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:13:10] 2025-06-05 02:12:57,932 | INFO     | PID=23095 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 22:13:10] 2025-06-05 02:12:57,932 | INFO     | .. there are 25 such processes running
[2025-06-04 22:13:10] 2025-06-05 02:12:57,933 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:13:10] 2025-06-05 02:12:57,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:13:10] 2025-06-05 02:12:57,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:13:10] 2025-06-05 02:12:57,964 | INFO     | all data control threads have been joined
[2025-06-04 22:13:10] 2025-06-05 02:12:58,704 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,704 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,745 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,761 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:13:10] 2025-06-05 02:12:58,857 | INFO     | all payload control threads have been joined
[2025-06-04 22:13:10] 2025-06-05 02:12:58,905 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,963 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:58,973 | INFO     | [data] control thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,285 | INFO     | all job control threads have been joined
[2025-06-04 22:13:10] 2025-06-05 02:12:59,643 | INFO     | [job] validate thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,664 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,823 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,839 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,872 | INFO     | [payload] control thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:12:59,992 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:13:00,291 | INFO     | [job] control thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:13:00,306 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:13:01,788 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:13:10] 2025-06-05 02:13:02,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413305620288)>', '<ExcThread(monitor, started 140412865992448)>']
[2025-06-04 22:13:10] 2025-06-05 02:13:02,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:13:10] 2025-06-05 02:13:02,973 | INFO     | [monitor] control thread has ended
[2025-06-04 22:13:10] 2025-06-05 02:13:07,802 | INFO     | all workflow threads have been joined
[2025-06-04 22:13:10] 2025-06-05 02:13:07,802 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:13:10] 2025-06-05 02:13:07,802 | INFO     | traces error code: 0
[2025-06-04 22:13:10] 2025-06-05 02:13:07,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:13:10] 2025-06-05 02:13:08,149 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:13:10] 2025-06-05 02:13:08,189 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:13:10] 2025-06-05 02:13:08,229 [wrapper] pilotpid: 23095
[2025-06-04 22:13:10] 2025-06-05 02:13:08,266 [wrapper] Pilot exit status: 0
[2025-06-04 22:13:10] 2025-06-05 02:13:08,584 [wrapper] pandaids: 6680114253 6680114253
[2025-06-04 22:13:10] 2025-06-05 02:13:08,944 [wrapper] cleanup supervisor_pilot 81247 23096
[2025-06-04 22:13:10] 2025-06-05 02:13:08,998 [wrapper] Test setup, not cleaning
[2025-06-04 22:13:10] 2025-06-05 02:13:09,042 [wrapper] apfmon messages muted
[2025-06-04 22:13:10] 2025-06-05 02:13:09,085 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:13:10] 2025-06-05 02:13:09,130 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:13:10]  *** Error codes and diagnostics ***
[2025-06-04 22:13:10]     "exeErrorCode": 0,
[2025-06-04 22:13:10]     "exeErrorDiag": "",
[2025-06-04 22:13:10]     "pilotErrorCode": 0,
[2025-06-04 22:13:10]     "pilotErrorDiag": "",
[2025-06-04 22:13:10]  *** Listing of results directory ***
[2025-06-04 22:13:10] total 602700
[2025-06-04 22:13:10] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 18:14 pilot3.tar.gz
[2025-06-04 22:13:10] -rwx------ 1 boincer umatlas     37140 Jun  4 18:36 runpilot2-wrapper.sh
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 18:36 queuedata.json
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas       100 Jun  4 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:13:10] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 18:37 run_atlas
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas       105 Jun  4 18:37 job.xml
[2025-06-04 22:13:10] -rw-r--r-- 3 boincer umatlas 216253522 Jun  4 18:37 EVNT.45006593._001193.pool.root.1
[2025-06-04 22:13:10] -rw-r--r-- 3 boincer umatlas 216253522 Jun  4 18:37 ATLAS.root_0
[2025-06-04 22:13:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:37 start_atlas.sh
[2025-06-04 22:13:10] drwxrwx--x 2 boincer umatlas      4096 Jun  4 18:37 shared
[2025-06-04 22:13:10] -rw-r--r-- 2 boincer umatlas    508876 Jun  4 18:37 input.tar.gz
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas         0 Jun  4 18:37 boinc_lockfile
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 20:12 pandaJob.out
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas    987117 Jun  4 20:12 agis_schedconf.cvmfs.json
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas 178815028 Jun  4 22:10 HITS.45006595._056970.pool.root.1
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas       530 Jun  4 22:10 boinc_task_state.xml
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 22:10 init_data.xml
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas      1076 Jun  4 22:11 memory_monitor_summary.json
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas   1598969 Jun  4 22:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas    339533 Jun  4 22:11 log.45006595._056970.job.log.tgz.1
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas        96 Jun  4 22:12 pilot_heartbeat.json
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas      7745 Jun  4 22:12 heartbeat.json
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas      4747 Jun  4 22:13 pilotlog.txt
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas    665387 Jun  4 22:13 log.45006595._056970.job.log.1
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 22:13 boinc_mmap_file
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas        28 Jun  4 22:13 wrapper_checkpoint.txt
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas       357 Jun  4 22:13 output.list
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas       620 Jun  4 22:13 runtime_log
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas   1024000 Jun  4 22:13 result.tar.gz
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas      8744 Jun  4 22:13 runtime_log.err
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas       784 Jun  4 22:13 JkMLDmAuBh7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb3nKDmeK1NVm.diag
[2025-06-04 22:13:10] -rw-r--r-- 1 boincer umatlas     23126 Jun  4 22:13 stderr.txt
[2025-06-04 22:13:10] HITS file was successfully produced:
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas 178815028 Jun  4 22:10 shared/HITS.pool.root.1
[2025-06-04 22:13:10]  *** Contents of shared directory: ***
[2025-06-04 22:13:10] total 387336
[2025-06-04 22:13:10] -rw-r--r-- 3 boincer umatlas 216253522 Jun  4 18:37 ATLAS.root_0
[2025-06-04 22:13:10] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:37 start_atlas.sh
[2025-06-04 22:13:10] -rw-r--r-- 2 boincer umatlas    508876 Jun  4 18:37 input.tar.gz
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas 178815028 Jun  4 22:10 HITS.pool.root.1
[2025-06-04 22:13:10] -rw------- 1 boincer umatlas   1024000 Jun  4 22:13 result.tar.gz
22:13:12 (12413): run_atlas exited; CPU time 30426.168623
22:13:12 (12413): called boinc_finish(0)

</stderr_txt>
]]>

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