Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:29:29 (4800): wrapper (7.7.26015): starting
18:29:29 (4800): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:29:30] Arguments: --nthreads 8
[2025-06-04 18:29:30] Threads: 8
[2025-06-04 18:29:30] Checking for CVMFS
[2025-06-04 18:29:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:29:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:29:30] 2.11.2.0 12263 11737 295448 146797 0 130 13871856 18432001 21415 130560 0 92088838 99.307 121753428 60314 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 18:29:30] CVMFS is ok
[2025-06-04 18:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:29:30] Further information can be found at the LHC@home message board.
[2025-06-04 18:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:29:30] Checking for apptainer binary...
[2025-06-04 18:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:29:30] Running /usr/bin/apptainer --version
[2025-06-04 18:29:30] apptainer version 1.3.2-1.el7
[2025-06-04 18:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:29:31] c-212-14.aglt2.org
[2025-06-04 18:29:31] apptainer works
[2025-06-04 18:29:31] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:29:31] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:29:31] Starting ATLAS job with PandaID=6668688884
[2025-06-04 18:29:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:05 (4800): BOINC client no longer exists - exiting
20:00:05 (4800): timer handler: client dead, exiting
20:12:40 (12412): wrapper (7.7.26015): starting
20:12:40 (12412): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:12:40] Arguments: --nthreads 8
[2025-06-04 20:12:40] Threads: 8
[2025-06-04 20:12:40] This job has been restarted, cleaning up previous attempt
[2025-06-04 20:12:40] Checking for CVMFS
[2025-06-04 20:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:12:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:12:40] 2.11.2.0 12263 11840 259984 146798 1 458 17413425 18432000 21516 130560 0 92540432 99.301 122930819 60405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 20:12:40] CVMFS is ok
[2025-06-04 20:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 20:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 20:12:40] Further information can be found at the LHC@home message board.
[2025-06-04 20:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:12:40] Checking for apptainer binary...
[2025-06-04 20:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:12:40] Running /usr/bin/apptainer --version
[2025-06-04 20:12:40] apptainer version 1.3.2-1.el7
[2025-06-04 20:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:12:42] c-212-14.aglt2.org
[2025-06-04 20:12:42] apptainer works
[2025-06-04 20:12:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:12:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:12:42] Starting ATLAS job with PandaID=6668688884
[2025-06-04 20:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:26:28]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:26:28] 2025-06-05 03:26:13,968 | INFO     | extracted standard info from prmon json
[2025-06-04 23:26:28] 2025-06-05 03:26:13,968 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:26:28] 2025-06-05 03:26:13,968 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:26:28] 2025-06-05 03:26:13,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:26:28] 2025-06-05 03:26:13,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:26:28] 2025-06-05 03:26:13,981 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:26:28] 2025-06-05 03:26:13,981 | INFO     | sum of square deviations: 2093454619.6613832
[2025-06-04 23:26:28] 2025-06-05 03:26:13,982 | INFO     | sum of deviations: 34254865399.227528
[2025-06-04 23:26:28] 2025-06-05 03:26:13,982 | INFO     | mean x: 1749088156.0423281
[2025-06-04 23:26:28] 2025-06-05 03:26:13,982 | INFO     | mean y: 2448728.8465608465
[2025-06-04 23:26:28] 2025-06-05 03:26:13,982 | INFO     | -- intersect: -28617602928.305794
[2025-06-04 23:26:28] 2025-06-05 03:26:13,982 | INFO     | intersect: -28617602928.305794
[2025-06-04 23:26:28] 2025-06-05 03:26:13,997 | INFO     | chi2: 2.397294838539116
[2025-06-04 23:26:28] 2025-06-05 03:26:13,997 | INFO     | sum of square deviations: 1931667979.6521704
[2025-06-04 23:26:28] 2025-06-05 03:26:13,998 | INFO     | sum of deviations: 45605549466.17395
[2025-06-04 23:26:28] 2025-06-05 03:26:13,998 | INFO     | mean x: 1749088003.5434783
[2025-06-04 23:26:28] 2025-06-05 03:26:13,998 | INFO     | mean y: 2459175.2282608696
[2025-06-04 23:26:28] 2025-06-05 03:26:13,998 | INFO     | -- intersect: -41292484006.80716
[2025-06-04 23:26:28] 2025-06-05 03:26:13,998 | INFO     | intersect: -41292484006.80716
[2025-06-04 23:26:28] 2025-06-05 03:26:14,007 | INFO     | chi2: 1.6202523089346805
[2025-06-04 23:26:28] 2025-06-05 03:26:14,007 | INFO     | current chi2=1.6202523089346805 (change=32.41330674527945 %)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,007 | INFO     | sum of square deviations: 1778439639.6424627
[2025-06-04 23:26:28] 2025-06-05 03:26:14,008 | INFO     | sum of deviations: 44205065830.02793
[2025-06-04 23:26:28] 2025-06-05 03:26:14,008 | INFO     | mean x: 1749087851.0446928
[2025-06-04 23:26:28] 2025-06-05 03:26:14,008 | INFO     | mean y: 2457780.87150838
[2025-06-04 23:26:28] 2025-06-05 03:26:14,008 | INFO     | -- intersect: -43473037183.62267
[2025-06-04 23:26:28] 2025-06-05 03:26:14,008 | INFO     | intersect: -43473037183.62267
[2025-06-04 23:26:28] 2025-06-05 03:26:14,009 | INFO     | chi2: 1.6195959665955149
[2025-06-04 23:26:28] 2025-06-05 03:26:14,009 | INFO     | current chi2=1.6195959665955149 (change=0.040508650137164044 %)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,009 | INFO     | right removable region: 178
[2025-06-04 23:26:28] 2025-06-05 03:26:14,009 | INFO     | sum of square deviations: 1931663099.6521704
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | sum of deviations: 4070173248.130436
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | mean x: 1749088308.5434783
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | mean y: 2476864.1086956523
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | -- intersect: -3682996261.7864437
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | intersect: -3682996261.7864437
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | chi2: 0.905552516380883
[2025-06-04 23:26:28] 2025-06-05 03:26:14,010 | INFO     | current chi2=0.905552516380883 (change=62.226068240620904 %)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,011 | INFO     | sum of square deviations: 1778429879.6424627
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | sum of deviations: -6182936505.346368
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | mean x: 1749088461.0446928
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | mean y: 2487069.7932960894
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | -- intersect: 6083414420.748222
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | intersect: 6083414420.748222
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | chi2: 0.8032234056454635
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | current chi2=0.8032234056454635 (change=11.300185122822741 %)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | left removable region: 20
[2025-06-04 23:26:28] 2025-06-05 03:26:14,012 | INFO     | sum of square deviations: 1223069257.0949392
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | sum of deviations: 1952675666.6265826
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | mean x: 1749088430.550633
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | mean y: 2502946.234177215
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | -- intersect: -2789981941.5199623
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | intersect: -2789981941.5199623
[2025-06-04 23:26:28] 2025-06-05 03:26:14,013 | INFO     | chi2: 0.0011141213428930415
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | -- intersect: -2789981941.5199623
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | current memory leak: 1.60 B/s (using 158 data points, chi2=0.00)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | ..............................
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | . Timing measurements:
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | . get job = 0 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | . initial setup = 1 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,014 | INFO     | . payload setup = 12 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,015 | INFO     | . stage-in = 0 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,015 | INFO     | . payload execution = 11517 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,015 | INFO     | . stage-out = 3 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,015 | INFO     | . log creation = 0 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,015 | INFO     | ..............................
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | 
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | job summary report
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | --------------------------------------------------
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | PanDA job id: 6668688884
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | task id: 44871837
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | errors: (none)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:26:28] 2025-06-05 03:26:14,218 | INFO     | pilot state: finished 
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | transexitcode: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | exeerrorcode: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | exeerrordiag: 
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | exitcode: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | exitmsg: OK
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | cpuconsumptiontime: 43206 s
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | nevents: 400
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | neventsw: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | pid: 48712
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | pgrp: 48712
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | corecount: 8
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | event service: False
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | sizes: {0: 2397392, 7: 2397598, 11: 2397626, 11531: 2426835, 11535: 2435832, 11579: 2435946}
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | --------------------------------------------------
[2025-06-04 23:26:28] 2025-06-05 03:26:14,219 | INFO     | 
[2025-06-04 23:26:28] 2025-06-05 03:26:14,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 23:26:28] 2025-06-05 03:26:14,296 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,296 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,296 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,296 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,297 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:26:28] 2025-06-05 03:26:14,298 | INFO     | job 6668688884 has completed (purged errors)
[2025-06-04 23:26:28] 2025-06-05 03:26:14,298 | INFO     | overall cleanup function is called
[2025-06-04 23:26:28] 2025-06-05 03:26:15,310 | INFO     | --- collectZombieJob: --- 10, [48712]
[2025-06-04 23:26:28] 2025-06-05 03:26:15,310 | INFO     | zombie collector waiting for pid 48712
[2025-06-04 23:26:28] 2025-06-05 03:26:15,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:26:28] 2025-06-05 03:26:15,310 | INFO     | collected zombie processes
[2025-06-04 23:26:28] 2025-06-05 03:26:15,310 | INFO     | will attempt to kill all subprocesses of pid=48712
[2025-06-04 23:26:28] 2025-06-05 03:26:15,844 | INFO     | process IDs to be killed: [48712] (in reverse order)
[2025-06-04 23:26:28] 2025-06-05 03:26:16,363 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:26:28] 2025-06-05 03:26:16,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:26:28] 2025-06-05 03:26:16,373 | INFO     | did not find any defunct processes belonging to 48712
[2025-06-04 23:26:28] 2025-06-05 03:26:16,382 | INFO     | did not find any defunct processes belonging to 48712
[2025-06-04 23:26:28] 2025-06-05 03:26:16,382 | INFO     | ready for new job
[2025-06-04 23:26:28] 2025-06-05 03:26:16,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:26:28] 2025-06-05 03:26:16,384 | INFO     | **************************************
[2025-06-04 23:26:28] 2025-06-05 03:26:16,384 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:26:28] 2025-06-05 03:26:16,384 | INFO     | **************************************
[2025-06-04 23:26:28] 2025-06-05 03:26:16,384 | INFO     | 
[2025-06-04 23:26:28] 2025-06-05 03:26:16,400 | INFO     | architecture information:
[2025-06-04 23:26:28] 2025-06-05 03:26:16,401 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:26:28] 2025-06-05 03:26:16,467 | INFO     | cat /etc/os-release:
[2025-06-04 23:26:28] NAME="CentOS Linux"
[2025-06-04 23:26:28] VERSION="7 (Core)"
[2025-06-04 23:26:28] ID="centos"
[2025-06-04 23:26:28] ID_LIKE="rhel fedora"
[2025-06-04 23:26:28] VERSION_ID="7"
[2025-06-04 23:26:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:26:28] ANSI_COLOR="0;31"
[2025-06-04 23:26:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:26:28] HOME_URL="https://www.centos.org/"
[2025-06-04 23:26:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:26:28] 
[2025-06-04 23:26:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:26:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:26:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:26:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:26:28] 
[2025-06-04 23:26:28] 2025-06-05 03:26:16,468 | INFO     | **************************************
[2025-06-04 23:26:28] 2025-06-05 03:26:16,971 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 23:26:28] 2025-06-05 03:26:17,130 | INFO     | sufficient remaining disk space (104996012032 B)
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | INFO     | update_server=False
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:26:28] 2025-06-05 03:26:17,131 | INFO     | aborting loop
[2025-06-04 23:26:28] 2025-06-05 03:26:17,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:26:28] 2025-06-05 03:26:17,392 | INFO     | all data control threads have been joined
[2025-06-04 23:26:28] 2025-06-05 03:26:17,945 | INFO     | all job control threads have been joined
[2025-06-04 23:26:28] 2025-06-05 03:26:18,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:26:28] 2025-06-05 03:26:18,156 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:18,160 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:18,264 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:18,438 | INFO     | [data] control thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:18,519 | INFO     | PID=23423 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 23:26:28] 2025-06-05 03:26:18,519 | INFO     | .. there are 23 such processes running
[2025-06-04 23:26:28] 2025-06-05 03:26:18,519 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:26:28] 2025-06-05 03:26:18,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:26:28] 2025-06-05 03:26:18,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:26:28] 2025-06-05 03:26:18,622 | INFO     | all payload control threads have been joined
[2025-06-04 23:26:28] 2025-06-05 03:26:18,951 | INFO     | [job] control thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:26:28] 2025-06-05 03:26:19,266 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,299 | INFO     | [job] validate thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,305 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,309 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,369 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,443 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,628 | INFO     | [payload] control thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:19,712 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:20,125 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:20,130 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:21,167 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:26:28] 2025-06-05 03:26:21,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963870656320)>', '<ExcThread(monitor, started 139963437930240)>']
[2025-06-04 23:26:28] 2025-06-05 03:26:21,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:26:28] 2025-06-05 03:26:21,537 | INFO     | [monitor] control thread has ended
[2025-06-04 23:26:28] 2025-06-05 03:26:26,349 | INFO     | all workflow threads have been joined
[2025-06-04 23:26:28] 2025-06-05 03:26:26,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:26:28] 2025-06-05 03:26:26,349 | INFO     | traces error code: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:26,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:26:28] 2025-06-05 03:26:26,591 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:26:28] 2025-06-05 03:26:26,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:26:28] 2025-06-05 03:26:26,596 [wrapper] pilotpid: 23423
[2025-06-04 23:26:28] 2025-06-05 03:26:26,644 [wrapper] Pilot exit status: 0
[2025-06-04 23:26:28] 2025-06-05 03:26:26,753 [wrapper] pandaids: 6668688884 6668688884
[2025-06-04 23:26:28] 2025-06-05 03:26:27,312 [wrapper] cleanup supervisor_pilot 18148 23424
[2025-06-04 23:26:28] 2025-06-05 03:26:27,320 [wrapper] Test setup, not cleaning
[2025-06-04 23:26:28] 2025-06-05 03:26:27,323 [wrapper] apfmon messages muted
[2025-06-04 23:26:28] 2025-06-05 03:26:27,335 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:26:28] 2025-06-05 03:26:27,352 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:26:28]  *** Error codes and diagnostics ***
[2025-06-04 23:26:28]     "exeErrorCode": 0,
[2025-06-04 23:26:28]     "exeErrorDiag": "",
[2025-06-04 23:26:28]     "pilotErrorCode": 0,
[2025-06-04 23:26:28]     "pilotErrorDiag": "",
[2025-06-04 23:26:28]  *** Listing of results directory ***
[2025-06-04 23:26:28] total 639628
[2025-06-04 23:26:28] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas    495897 May 28 12:21 pilot3.tar.gz
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas      5111 May 28 12:36 queuedata.json
[2025-06-04 23:26:28] -rwx------ 1 boincer umatlas     37140 May 28 12:37 runpilot2-wrapper.sh
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas       100 Jun  4 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:26:28] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 18:29 run_atlas
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas       105 Jun  4 18:29 job.xml
[2025-06-04 23:26:28] -rw-r--r-- 3 boincer umatlas 223106967 Jun  4 18:29 EVNT.44871834._003396.pool.root.1
[2025-06-04 23:26:28] -rw-r--r-- 3 boincer umatlas 223106967 Jun  4 18:29 ATLAS.root_0
[2025-06-04 23:26:28] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:29 start_atlas.sh
[2025-06-04 23:26:28] drwxrwx--x 2 boincer umatlas      4096 Jun  4 18:29 shared
[2025-06-04 23:26:28] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 18:29 input.tar.gz
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas         0 Jun  4 18:29 boinc_lockfile
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 20:12 pandaJob.out
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas    987117 Jun  4 20:12 agis_schedconf.cvmfs.json
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 23:21 init_data.xml
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas 202106212 Jun  4 23:24 HITS.44871837._087183.pool.root.1
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas       531 Jun  4 23:24 boinc_task_state.xml
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas      1076 Jun  4 23:25 memory_monitor_summary.json
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas   1598969 Jun  4 23:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas    368687 Jun  4 23:25 log.44871837._087183.job.log.tgz.1
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas      7760 Jun  4 23:26 heartbeat.json
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas        96 Jun  4 23:26 pilot_heartbeat.json
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 23:26 boinc_mmap_file
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas        28 Jun  4 23:26 wrapper_checkpoint.txt
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas      4747 Jun  4 23:26 pilotlog.txt
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas   1044298 Jun  4 23:26 log.44871837._087183.job.log.1
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas       357 Jun  4 23:26 output.list
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas       620 Jun  4 23:26 runtime_log
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas   1433600 Jun  4 23:26 result.tar.gz
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas       788 Jun  4 23:26 VyENDmQxYe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmybcKDmh8eoxm.diag
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas      8745 Jun  4 23:26 runtime_log.err
[2025-06-04 23:26:28] -rw-r--r-- 1 boincer umatlas     23190 Jun  4 23:26 stderr.txt
[2025-06-04 23:26:28] HITS file was successfully produced:
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas 202106212 Jun  4 23:24 shared/HITS.pool.root.1
[2025-06-04 23:26:28]  *** Contents of shared directory: ***
[2025-06-04 23:26:28] total 417172
[2025-06-04 23:26:28] -rw-r--r-- 3 boincer umatlas 223106967 Jun  4 18:29 ATLAS.root_0
[2025-06-04 23:26:28] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:29 start_atlas.sh
[2025-06-04 23:26:28] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 18:29 input.tar.gz
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas 202106212 Jun  4 23:24 HITS.pool.root.1
[2025-06-04 23:26:28] -rw------- 1 boincer umatlas   1433600 Jun  4 23:26 result.tar.gz
23:26:30 (12412): run_atlas exited; CPU time 42795.267839
23:26:30 (12412): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN