Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:29:26 (4298): wrapper (7.7.26015): starting
18:29:26 (4298): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:29:26] Arguments: --nthreads 8
[2025-06-04 18:29:26] Threads: 8
[2025-06-04 18:29:26] Checking for CVMFS
[2025-06-04 18:29:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:29:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:29:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:29:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:29:27] 2.11.2.0 12263 11737 295140 146797 0 129 13692480 18432001 21415 130560 0 92087038 99.309 121678829 60302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 18:29:27] CVMFS is ok
[2025-06-04 18:29:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:29:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:29:27] Further information can be found at the LHC@home message board.
[2025-06-04 18:29:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:29:27] Checking for apptainer binary...
[2025-06-04 18:29:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:29:27] Running /usr/bin/apptainer --version
[2025-06-04 18:29:27] apptainer version 1.3.2-1.el7
[2025-06-04 18:29:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:29:30] c-212-14.aglt2.org
[2025-06-04 18:29:30] apptainer works
[2025-06-04 18:29:30] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:29:30] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:29:30] Starting ATLAS job with PandaID=6668443447
[2025-06-04 18:29:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:12:40 (12411): wrapper (7.7.26015): starting
20:12:40 (12411): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:12:40] Arguments: --nthreads 8
[2025-06-04 20:12:40] Threads: 8
[2025-06-04 20:12:40] This job has been restarted, cleaning up previous attempt
[2025-06-04 20:12:40] Checking for CVMFS
[2025-06-04 20:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:12:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:12:40] 2.11.2.0 12263 11840 259984 146798 1 458 17413425 18432000 21516 130560 0 92540432 99.301 122930819 60405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 20:12:40] CVMFS is ok
[2025-06-04 20:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 20:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 20:12:40] Further information can be found at the LHC@home message board.
[2025-06-04 20:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:12:40] Checking for apptainer binary...
[2025-06-04 20:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:12:40] Running /usr/bin/apptainer --version
[2025-06-04 20:12:40] apptainer version 1.3.2-1.el7
[2025-06-04 20:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:12:42] c-212-14.aglt2.org
[2025-06-04 20:12:42] apptainer works
[2025-06-04 20:12:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:12:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:12:42] Starting ATLAS job with PandaID=6668443447
[2025-06-04 20:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:15:03]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:15:03] 2025-06-05 03:14:43,716 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:15:03] 2025-06-05 03:14:43,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:15:03] 2025-06-05 03:14:43,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:15:03] 2025-06-05 03:14:43,719 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:15:03] 2025-06-05 03:14:43,720 | INFO     | sum of square deviations: 1719465931.7966082
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | sum of deviations: 20856054864.32202
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | mean x: 1749087789.0338984
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | mean y: 2455614.4463276835
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | -- intersect: -21212893998.494835
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | intersect: -21212893998.494835
[2025-06-04 23:15:03] 2025-06-05 03:14:43,725 | INFO     | chi2: 2.3246803358396946
[2025-06-04 23:15:03] 2025-06-05 03:14:43,726 | INFO     | sum of square deviations: 1577827896.7906997
[2025-06-04 23:15:03] 2025-06-05 03:14:43,726 | INFO     | sum of deviations: 31790045485.65115
[2025-06-04 23:15:03] 2025-06-05 03:14:43,726 | INFO     | mean x: 1749087636.5348837
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | mean y: 2467098.8081395347
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | -- intersect: -35238116260.71519
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | intersect: -35238116260.71519
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | chi2: 1.5498646641100107
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | current chi2=1.5498646641100107 (change=33.32998777441862 %)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,727 | INFO     | sum of square deviations: 1444179396.8503048
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | sum of deviations: 30828826256.67662
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | mean x: 1749087484.0299401
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | mean y: 2466001.6646706588
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | -- intersect: -37335218132.6534
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | intersect: -37335218132.6534
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | chi2: 1.5504799997742977
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | current chi2=1.5504799997742977 (change=-0.03970254168227087 %)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,728 | INFO     | right removable region: 166
[2025-06-04 23:15:03] 2025-06-05 03:14:43,733 | INFO     | sum of square deviations: 1577824236.7906997
[2025-06-04 23:15:03] 2025-06-05 03:14:43,733 | INFO     | sum of deviations: -7786474724.465115
[2025-06-04 23:15:03] 2025-06-05 03:14:43,733 | INFO     | mean x: 1749087941.5348837
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | mean y: 2486092.9941860465
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | -- intersect: 8634137661.060888
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | intersect: 8634137661.060888
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | chi2: 0.8053547071329302
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | current chi2=0.8053547071329302 (change=65.35632470767086 %)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,734 | INFO     | sum of square deviations: 1444182691.784426
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | sum of deviations: -9563986595.197603
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | mean x: 1749088094.0359282
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | mean y: 2488099.5329341316
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | -- intersect: 11585686804.476545
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | intersect: 11585686804.476545
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | chi2: 0.7991457254823435
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | current chi2=0.7991457254823435 (change=0.770962359267847 %)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,735 | INFO     | left removable region: 20
[2025-06-04 23:15:03] 2025-06-05 03:14:43,736 | INFO     | sum of square deviations: 964990998.3904128
[2025-06-04 23:15:03] 2025-06-05 03:14:43,736 | INFO     | sum of deviations: 351533087.630137
[2025-06-04 23:15:03] 2025-06-05 03:14:43,736 | INFO     | mean x: 1749088063.5273972
[2025-06-04 23:15:03] 2025-06-05 03:14:43,736 | INFO     | mean y: 2502863.342465753
[2025-06-04 23:15:03] 2025-06-05 03:14:43,736 | INFO     | -- intersect: -634666113.9167856
[2025-06-04 23:15:03] 2025-06-05 03:14:43,741 | INFO     | intersect: -634666113.9167856
[2025-06-04 23:15:03] 2025-06-05 03:14:43,741 | INFO     | chi2: 0.00037957971468722114
[2025-06-04 23:15:03] 2025-06-05 03:14:43,741 | INFO     | -- intersect: -634666113.9167856
[2025-06-04 23:15:03] 2025-06-05 03:14:43,741 | INFO     | current memory leak: 0.36 B/s (using 146 data points, chi2=0.00)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | ..............................
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . Timing measurements:
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . get job = 0 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . initial setup = 1 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . payload setup = 12 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . stage-in = 0 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . payload execution = 10798 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . stage-out = 4 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | . log creation = 0 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,742 | INFO     | ..............................
[2025-06-04 23:15:03] 2025-06-05 03:14:43,907 | INFO     | 
[2025-06-04 23:15:03] 2025-06-05 03:14:43,909 | INFO     | job summary report
[2025-06-04 23:15:03] 2025-06-05 03:14:43,909 | INFO     | --------------------------------------------------
[2025-06-04 23:15:03] 2025-06-05 03:14:43,909 | INFO     | PanDA job id: 6668443447
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | task id: 44871837
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | errors: (none)
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | pilot state: finished 
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | transexitcode: 0
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | exeerrorcode: 0
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | exeerrordiag: 
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | exitcode: 0
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | exitmsg: OK
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | cpuconsumptiontime: 45257 s
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | nevents: 400
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | neventsw: 0
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | pid: 48465
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | pgrp: 48465
[2025-06-04 23:15:03] 2025-06-05 03:14:43,910 | INFO     | corecount: 8
[2025-06-04 23:15:03] 2025-06-05 03:14:43,911 | INFO     | event service: False
[2025-06-04 23:15:03] 2025-06-05 03:14:43,911 | INFO     | sizes: {0: 2397392, 1: 2397420, 8: 2397626, 11: 2397654, 10815: 2426576, 10816: 2426575, 10821: 2435700, 10822: 2435756, 10889: 2435926}
[2025-06-04 23:15:03] 2025-06-05 03:14:43,911 | INFO     | --------------------------------------------------
[2025-06-04 23:15:03] 2025-06-05 03:14:43,911 | INFO     | 
[2025-06-04 23:15:03] 2025-06-05 03:14:43,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 23:15:03] 2025-06-05 03:14:44,314 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:15:03] 2025-06-05 03:14:44,315 | INFO     | job 6668443447 has completed (purged errors)
[2025-06-04 23:15:03] 2025-06-05 03:14:44,316 | INFO     | overall cleanup function is called
[2025-06-04 23:15:03] 2025-06-05 03:14:45,352 | INFO     | --- collectZombieJob: --- 10, [48465]
[2025-06-04 23:15:03] 2025-06-05 03:14:45,352 | INFO     | zombie collector waiting for pid 48465
[2025-06-04 23:15:03] 2025-06-05 03:14:45,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:15:03] 2025-06-05 03:14:45,352 | INFO     | collected zombie processes
[2025-06-04 23:15:03] 2025-06-05 03:14:45,352 | INFO     | will attempt to kill all subprocesses of pid=48465
[2025-06-04 23:15:03] 2025-06-05 03:14:45,881 | INFO     | process IDs to be killed: [48465] (in reverse order)
[2025-06-04 23:15:03] 2025-06-05 03:14:46,762 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:15:03] 2025-06-05 03:14:46,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:15:03] 2025-06-05 03:14:46,784 | INFO     | did not find any defunct processes belonging to 48465
[2025-06-04 23:15:03] 2025-06-05 03:14:46,806 | INFO     | did not find any defunct processes belonging to 48465
[2025-06-04 23:15:03] 2025-06-05 03:14:46,807 | INFO     | ready for new job
[2025-06-04 23:15:03] 2025-06-05 03:14:46,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:15:03] 2025-06-05 03:14:46,808 | INFO     | **************************************
[2025-06-04 23:15:03] 2025-06-05 03:14:46,808 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:15:03] 2025-06-05 03:14:46,808 | INFO     | **************************************
[2025-06-04 23:15:03] 2025-06-05 03:14:46,808 | INFO     | 
[2025-06-04 23:15:03] 2025-06-05 03:14:46,817 | INFO     | architecture information:
[2025-06-04 23:15:03] 2025-06-05 03:14:46,867 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:15:03] 2025-06-05 03:14:47,025 | INFO     | cat /etc/os-release:
[2025-06-04 23:15:03] NAME="CentOS Linux"
[2025-06-04 23:15:03] VERSION="7 (Core)"
[2025-06-04 23:15:03] ID="centos"
[2025-06-04 23:15:03] ID_LIKE="rhel fedora"
[2025-06-04 23:15:03] VERSION_ID="7"
[2025-06-04 23:15:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:15:03] ANSI_COLOR="0;31"
[2025-06-04 23:15:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:15:03] HOME_URL="https://www.centos.org/"
[2025-06-04 23:15:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:15:03] 
[2025-06-04 23:15:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:15:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:15:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:15:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:15:03] 
[2025-06-04 23:15:03] 2025-06-05 03:14:47,026 | INFO     | **************************************
[2025-06-04 23:15:03] 2025-06-05 03:14:47,529 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 23:15:03] 2025-06-05 03:14:47,665 | INFO     | sufficient remaining disk space (104390983680 B)
[2025-06-04 23:15:03] 2025-06-05 03:14:47,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:15:03] 2025-06-05 03:14:47,666 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:15:03] 2025-06-05 03:14:47,666 | INFO     | update_server=False
[2025-06-04 23:15:03] 2025-06-05 03:14:47,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:15:03] 2025-06-05 03:14:47,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:15:03] 2025-06-05 03:14:47,772 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 23:15:03] 2025-06-05 03:14:47,772 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 23:15:03] 2025-06-05 03:14:47,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:15:03] 2025-06-05 03:14:47,784 | INFO     | will abort loop
[2025-06-04 23:15:03] 2025-06-05 03:14:48,015 | INFO     | all payload control threads have been joined
[2025-06-04 23:15:03] 2025-06-05 03:14:48,166 | INFO     | all job control threads have been joined
[2025-06-04 23:15:03] 2025-06-05 03:14:48,290 | INFO     | all data control threads have been joined
[2025-06-04 23:15:03] 2025-06-05 03:14:48,533 | INFO     | PID=23340 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 23:15:03] 2025-06-05 03:14:48,533 | INFO     | .. there are 24 such processes running
[2025-06-04 23:15:03] 2025-06-05 03:14:48,533 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:15:03] 2025-06-05 03:14:48,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:15:03] 2025-06-05 03:14:48,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:15:03] 2025-06-05 03:14:48,679 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:48,789 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:48,790 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:48,792 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:48,935 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:48,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:15:03] 2025-06-05 03:14:48,983 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,021 | INFO     | [payload] control thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,123 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,172 | INFO     | [job] control thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,296 | INFO     | [data] control thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,299 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,299 | INFO     | [job] validate thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,335 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,685 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:49,929 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:15:03] 2025-06-05 03:14:49,940 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:53,939 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:15:03] 2025-06-05 03:14:54,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289754076992)>', '<ExcThread(monitor, started 140289184356096)>']
[2025-06-04 23:15:03] 2025-06-05 03:14:55,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:15:03] 2025-06-05 03:14:55,574 | INFO     | [monitor] control thread has ended
[2025-06-04 23:15:03] 2025-06-05 03:14:59,830 | INFO     | all workflow threads have been joined
[2025-06-04 23:15:03] 2025-06-05 03:14:59,830 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:15:03] 2025-06-05 03:14:59,830 | INFO     | traces error code: 0
[2025-06-04 23:15:03] 2025-06-05 03:14:59,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:15:03] 2025-06-05 03:15:00,106 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:15:03] 2025-06-05 03:15:00,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:15:03] 2025-06-05 03:15:00,234 [wrapper] pilotpid: 23340
[2025-06-04 23:15:03] 2025-06-05 03:15:00,361 [wrapper] Pilot exit status: 0
[2025-06-04 23:15:03] 2025-06-05 03:15:00,585 [wrapper] pandaids: 6668443447 6668443447
[2025-06-04 23:15:03] 2025-06-05 03:15:01,272 [wrapper] cleanup supervisor_pilot 18144 23341
[2025-06-04 23:15:03] 2025-06-05 03:15:01,363 [wrapper] Test setup, not cleaning
[2025-06-04 23:15:03] 2025-06-05 03:15:01,409 [wrapper] apfmon messages muted
[2025-06-04 23:15:03] 2025-06-05 03:15:01,449 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:15:03] 2025-06-05 03:15:01,514 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:15:03]  *** Error codes and diagnostics ***
[2025-06-04 23:15:03]     "exeErrorCode": 0,
[2025-06-04 23:15:03]     "exeErrorDiag": "",
[2025-06-04 23:15:03]     "pilotErrorCode": 0,
[2025-06-04 23:15:03]     "pilotErrorDiag": "",
[2025-06-04 23:15:03]  *** Listing of results directory ***
[2025-06-04 23:15:03] total 636484
[2025-06-04 23:15:03] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas    495897 May 28 09:01 pilot3.tar.gz
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas      5111 May 28 09:13 queuedata.json
[2025-06-04 23:15:03] -rwx------ 1 boincer umatlas     37140 May 28 09:14 runpilot2-wrapper.sh
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas       100 Jun  4 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:15:03] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 18:29 run_atlas
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas       105 Jun  4 18:29 job.xml
[2025-06-04 23:15:03] -rw-r--r-- 3 boincer umatlas 223336259 Jun  4 18:29 EVNT.44871834._003308.pool.root.1
[2025-06-04 23:15:03] -rw-r--r-- 3 boincer umatlas 223336259 Jun  4 18:29 ATLAS.root_0
[2025-06-04 23:15:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:29 start_atlas.sh
[2025-06-04 23:15:03] drwxrwx--x 2 boincer umatlas      4096 Jun  4 18:29 shared
[2025-06-04 23:15:03] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 18:29 input.tar.gz
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas         0 Jun  4 18:29 boinc_lockfile
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 20:12 pandaJob.out
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas    987117 Jun  4 20:12 agis_schedconf.cvmfs.json
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas 198520983 Jun  4 23:11 HITS.44871837._084790.pool.root.1
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas       531 Jun  4 23:12 boinc_task_state.xml
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas      6388 Jun  4 23:12 init_data.xml
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas      1074 Jun  4 23:13 memory_monitor_summary.json
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas   1598969 Jun  4 23:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas    377145 Jun  4 23:13 log.44871837._084790.job.log.tgz.1
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas        96 Jun  4 23:13 pilot_heartbeat.json
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas      7747 Jun  4 23:14 heartbeat.json
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas      4933 Jun  4 23:14 pilotlog.txt
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas        28 Jun  4 23:15 wrapper_checkpoint.txt
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 23:15 boinc_mmap_file
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas    982766 Jun  4 23:15 log.44871837._084790.job.log.1
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas       357 Jun  4 23:15 output.list
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas       620 Jun  4 23:15 runtime_log
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas   1382400 Jun  4 23:15 result.tar.gz
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas      8745 Jun  4 23:15 runtime_log.err
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas       788 Jun  4 23:15 1GYKDmkmVe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGYTKDm7bCdBn.diag
[2025-06-04 23:15:03] -rw-r--r-- 1 boincer umatlas     23141 Jun  4 23:15 stderr.txt
[2025-06-04 23:15:03] HITS file was successfully produced:
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas 198520983 Jun  4 23:11 shared/HITS.pool.root.1
[2025-06-04 23:15:03]  *** Contents of shared directory: ***
[2025-06-04 23:15:03] total 413852
[2025-06-04 23:15:03] -rw-r--r-- 3 boincer umatlas 223336259 Jun  4 18:29 ATLAS.root_0
[2025-06-04 23:15:03] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 18:29 start_atlas.sh
[2025-06-04 23:15:03] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 18:29 input.tar.gz
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas 198520983 Jun  4 23:11 HITS.pool.root.1
[2025-06-04 23:15:03] -rw------- 1 boincer umatlas   1382400 Jun  4 23:15 result.tar.gz
23:15:05 (12411): run_atlas exited; CPU time 44813.138493
23:15:05 (12411): called boinc_finish(0)

</stderr_txt>
]]>

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