Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:35 (30636): wrapper (7.7.26015): starting
04:03:35 (30636): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 04:03:35] Arguments: --nthreads 8
[2025-06-05 04:03:35] Threads: 8
[2025-06-05 04:03:35] Checking for CVMFS
[2025-06-05 04:03:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 04:03:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 04:03:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 04:03:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 04:03:37] 2.11.2.0 17186 34189 103076 146800 1 245 19262204 25165824 3141 130560 0 18363468 99.859 19262285 2072 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 04:03:37] CVMFS is ok
[2025-06-05 04:03:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 04:03:37] Checking for apptainer binary...
[2025-06-05 04:03:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 04:03:37] Running /usr/bin/apptainer --version
[2025-06-05 04:03:37] apptainer version 1.3.2-1.el7
[2025-06-05 04:03:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 04:03:46] cg-vwn311.simple-grid.lan
[2025-06-05 04:03:46] apptainer works
[2025-06-05 04:03:46] Set ATHENA_PROC_NUMBER=8
[2025-06-05 04:03:46] Set ATHENA_CORE_NUMBER=8
[2025-06-05 04:03:46] Starting ATLAS job with PandaID=6667280471
[2025-06-05 04:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 09:56:24]  *** The last 200 lines of the pilot log: ***
[2025-06-05 09:56:24] 2025-06-05 07:43:25,749 | INFO     | extracted standard info from prmon json
[2025-06-05 09:56:24] 2025-06-05 07:43:25,749 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 09:56:24] 2025-06-05 07:43:25,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 09:56:24] 2025-06-05 07:43:25,750 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 09:56:24] 2025-06-05 07:43:25,750 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 09:56:24] 2025-06-05 07:43:25,757 | INFO     | fitting pss+swap vs Time
[2025-06-05 09:56:24] 2025-06-05 07:43:25,758 | INFO     | sum of square deviations: 10449170802.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,762 | INFO     | sum of deviations: 154003879787.0002
[2025-06-05 09:56:24] 2025-06-05 07:43:25,765 | INFO     | mean x: 1749099474.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,766 | INFO     | mean y: 2442938.6377708977
[2025-06-05 09:56:24] 2025-06-05 07:43:25,766 | INFO     | -- intersect: -25776454758.952118
[2025-06-05 09:56:24] 2025-06-05 07:43:25,766 | INFO     | intersect: -25776454758.952118
[2025-06-05 09:56:24] 2025-06-05 07:43:25,766 | INFO     | chi2: 6.59381614747593
[2025-06-05 09:56:24] 2025-06-05 07:43:25,767 | INFO     | sum of square deviations: 9971385099.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,770 | INFO     | sum of deviations: 172526082870.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,771 | INFO     | mean x: 1749099321.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,771 | INFO     | mean y: 2448764.5817610063
[2025-06-05 09:56:24] 2025-06-05 07:43:25,771 | INFO     | -- intersect: -30260674309.962406
[2025-06-05 09:56:24] 2025-06-05 07:43:25,771 | INFO     | intersect: -30260674309.962406
[2025-06-05 09:56:24] 2025-06-05 07:43:25,771 | INFO     | chi2: 5.859655164714373
[2025-06-05 09:56:24] 2025-06-05 07:43:25,772 | INFO     | current chi2=5.859655164714373 (change=11.134083303832924 %)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,772 | INFO     | right removable region: 317
[2025-06-05 09:56:24] 2025-06-05 07:43:25,772 | INFO     | sum of square deviations: 9971385099.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,779 | INFO     | sum of deviations: 42210484028.00001
[2025-06-05 09:56:24] 2025-06-05 07:43:25,779 | INFO     | mean x: 1749099626.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,779 | INFO     | mean y: 2478600.0566037735
[2025-06-05 09:56:24] 2025-06-05 07:43:25,779 | INFO     | -- intersect: -7401742690.269566
[2025-06-05 09:56:24] 2025-06-05 07:43:25,779 | INFO     | intersect: -7401742690.269566
[2025-06-05 09:56:24] 2025-06-05 07:43:25,780 | INFO     | chi2: 1.9560611243812411
[2025-06-05 09:56:24] 2025-06-05 07:43:25,780 | INFO     | current chi2=1.9560611243812411 (change=70.33491561438198 %)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,781 | INFO     | sum of square deviations: 9508390372.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,784 | INFO     | sum of deviations: -6712212469.999998
[2025-06-05 09:56:24] 2025-06-05 07:43:25,784 | INFO     | mean x: 1749099779.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,784 | INFO     | mean y: 2494631.482428115
[2025-06-05 09:56:24] 2025-06-05 07:43:25,784 | INFO     | -- intersect: 1237228260.2626033
[2025-06-05 09:56:24] 2025-06-05 07:43:25,784 | INFO     | intersect: 1237228260.2626033
[2025-06-05 09:56:24] 2025-06-05 07:43:25,785 | INFO     | chi2: 0.8428547822749896
[2025-06-05 09:56:24] 2025-06-05 07:43:25,785 | INFO     | current chi2=0.8428547822749896 (change=56.91061123963552 %)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,786 | INFO     | sum of square deviations: 9059954057.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,791 | INFO     | sum of deviations: -15841473232.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,791 | INFO     | mean x: 1749099931.5
[2025-06-05 09:56:24] 2025-06-05 07:43:25,791 | INFO     | mean y: 2497728.159090909
[2025-06-05 09:56:24] 2025-06-05 07:43:25,792 | INFO     | -- intersect: 3060826674.586422
[2025-06-05 09:56:24] 2025-06-05 07:43:25,792 | INFO     | intersect: 3060826674.586422
[2025-06-05 09:56:24] 2025-06-05 07:43:25,792 | INFO     | chi2: 0.7939410560200258
[2025-06-05 09:56:24] 2025-06-05 07:43:25,792 | INFO     | current chi2=0.7939410560200258 (change=5.803339707338236 %)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,792 | INFO     | left removable region: 30
[2025-06-05 09:56:24] 2025-06-05 07:43:25,793 | INFO     | sum of square deviations: 7330250928.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,795 | INFO     | sum of deviations: 2274238721.9999995
[2025-06-05 09:56:24] 2025-06-05 07:43:25,800 | INFO     | mean x: 1749100206.0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,800 | INFO     | mean y: 2505446.355400697
[2025-06-05 09:56:24] 2025-06-05 07:43:25,800 | INFO     | -- intersect: -540159662.4130799
[2025-06-05 09:56:24] 2025-06-05 07:43:25,800 | INFO     | intersect: -540159662.4130799
[2025-06-05 09:56:24] 2025-06-05 07:43:25,801 | INFO     | chi2: 0.007328526509147478
[2025-06-05 09:56:24] 2025-06-05 07:43:25,801 | INFO     | -- intersect: -540159662.4130799
[2025-06-05 09:56:24] 2025-06-05 07:43:25,801 | INFO     | current memory leak: 0.31 B/s (using 287 data points, chi2=0.01)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,802 | INFO     | ..............................
[2025-06-05 09:56:24] 2025-06-05 07:43:25,802 | INFO     | . Timing measurements:
[2025-06-05 09:56:24] 2025-06-05 07:43:25,802 | INFO     | . get job = 0 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,802 | INFO     | . initial setup = 8 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | . payload setup = 143 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | . stage-in = 0 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | . payload execution = 19806 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | . stage-out = 4 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | . log creation = 1 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,803 | INFO     | ..............................
[2025-06-05 09:56:24] 2025-06-05 07:43:25,942 | INFO     | 
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | job summary report
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | --------------------------------------------------
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | PanDA job id: 6667280471
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | task id: 44871837
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | errors: (none)
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 09:56:24] 2025-06-05 07:43:25,943 | INFO     | pilot state: finished 
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | transexitcode: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | exeerrorcode: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | exeerrordiag: 
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | exitcode: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | exitmsg: OK
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | cpuconsumptiontime: 73924 s
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | nevents: 400
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | neventsw: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | pid: 12859
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | pgrp: 12859
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | corecount: 8
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | event service: False
[2025-06-05 09:56:24] 2025-06-05 07:43:25,944 | INFO     | sizes: {0: 2397221, 1: 2397420, 12: 2397420, 23: 2397448, 34: 2397476, 44: 2397504, 55: 2397660, 66: 2397688, 77: 2397716, 87: 2397772, 91: 2398006, 98: 2398314, 1
[2025-06-05 09:56:24] 2025-06-05 07:43:25,945 | INFO     | --------------------------------------------------
[2025-06-05 09:56:24] 2025-06-05 07:43:25,945 | INFO     | 
[2025-06-05 09:56:24] 2025-06-05 07:43:25,945 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 09:56:24] 2025-06-05 07:43:26,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 09:56:24] 2025-06-05 07:43:26,522 | INFO     | job 6667280471 has completed (purged errors)
[2025-06-05 09:56:24] 2025-06-05 07:43:26,522 | INFO     | overall cleanup function is called
[2025-06-05 09:56:24] 2025-06-05 07:43:27,531 | INFO     | --- collectZombieJob: --- 10, [12859]
[2025-06-05 09:56:24] 2025-06-05 07:43:27,532 | INFO     | zombie collector waiting for pid 12859
[2025-06-05 09:56:24] 2025-06-05 07:43:27,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 09:56:24] 2025-06-05 07:43:27,532 | INFO     | collected zombie processes
[2025-06-05 09:56:24] 2025-06-05 07:43:27,532 | INFO     | will attempt to kill all subprocesses of pid=12859
[2025-06-05 09:56:24] 2025-06-05 07:43:27,642 | INFO     | process IDs to be killed: [12859] (in reverse order)
[2025-06-05 09:56:24] 2025-06-05 07:43:28,291 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 09:56:24] 2025-06-05 07:43:28,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 09:56:24] 2025-06-05 07:43:28,295 | INFO     | did not find any defunct processes belonging to 12859
[2025-06-05 09:56:24] 2025-06-05 07:43:28,299 | INFO     | did not find any defunct processes belonging to 12859
[2025-06-05 09:56:24] 2025-06-05 07:43:28,300 | INFO     | ready for new job
[2025-06-05 09:56:24] 2025-06-05 07:43:28,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 09:56:24] 2025-06-05 07:43:28,303 | INFO     | **************************************
[2025-06-05 09:56:24] 2025-06-05 07:43:28,303 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 09:56:24] 2025-06-05 07:43:28,303 | INFO     | **************************************
[2025-06-05 09:56:24] 2025-06-05 07:43:28,303 | INFO     | 
[2025-06-05 09:56:24] 2025-06-05 07:43:28,304 | INFO     | pilot is running in a VM
[2025-06-05 09:56:24] 2025-06-05 07:43:28,304 | INFO     | architecture information:
[2025-06-05 09:56:24] 2025-06-05 07:43:28,305 | INFO     | executing command: cat /etc/os-release
[2025-06-05 09:56:24] 2025-06-05 07:43:28,456 | INFO     | cat /etc/os-release:
[2025-06-05 09:56:24] NAME="CentOS Linux"
[2025-06-05 09:56:24] VERSION="7 (Core)"
[2025-06-05 09:56:24] ID="centos"
[2025-06-05 09:56:24] ID_LIKE="rhel fedora"
[2025-06-05 09:56:24] VERSION_ID="7"
[2025-06-05 09:56:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 09:56:24] ANSI_COLOR="0;31"
[2025-06-05 09:56:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 09:56:24] HOME_URL="https://www.centos.org/"
[2025-06-05 09:56:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 09:56:24] 
[2025-06-05 09:56:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 09:56:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 09:56:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 09:56:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 09:56:24] 
[2025-06-05 09:56:24] 2025-06-05 07:43:28,456 | INFO     | **************************************
[2025-06-05 09:56:24] 2025-06-05 07:43:28,960 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-05 09:56:24] 2025-06-05 07:43:29,257 | INFO     | sufficient remaining disk space (497234739200 B)
[2025-06-05 09:56:24] 2025-06-05 07:43:29,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 09:56:24] 2025-06-05 07:43:29,258 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 09:56:24] 2025-06-05 07:43:29,258 | INFO     | update_server=False
[2025-06-05 09:56:24] 2025-06-05 07:43:29,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 09:56:24] 2025-06-05 07:43:29,258 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 09:56:24] 2025-06-05 07:43:29,259 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 09:56:24] 2025-06-05 07:43:29,260 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 09:56:24] 2025-06-05 07:43:29,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 09:56:24] 2025-06-05 07:43:29,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 09:56:24] 2025-06-05 07:43:29,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:56:24] 2025-06-05 07:43:29,262 | INFO     | aborting loop
[2025-06-05 09:56:24] 2025-06-05 07:43:29,776 | INFO     | all data control threads have been joined
[2025-06-05 09:56:24] 2025-06-05 07:43:29,886 | INFO     | all job control threads have been joined
[2025-06-05 09:56:24] 2025-06-05 07:43:30,264 | INFO     | [job] retrieve thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,268 | INFO     | [job] job monitor thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,328 | INFO     | [payload] validate_post thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,652 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,727 | INFO     | all payload control threads have been joined
[2025-06-05 09:56:24] 2025-06-05 07:43:30,782 | INFO     | [data] control thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,879 | INFO     | [data] copytool_in thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,892 | INFO     | [job] control thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:30,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 09:56:24] 2025-06-05 07:43:30,982 | INFO     | [job] validate thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,088 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,171 | INFO     | [payload] failed_post thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,265 | INFO     | [data] copytool_out thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,381 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,733 | INFO     | [payload] control thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:31,962 | INFO     | [job] queue monitor thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:32,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 09:56:24] 2025-06-05 07:43:36,665 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 09:56:24] 2025-06-05 07:43:37,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735792449344)>', '<ExcThread(monitor, started 139735200683776)>']
[2025-06-05 09:56:24] 2025-06-05 07:43:37,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 09:56:24] 2025-06-05 07:43:37,310 | INFO     | [monitor] control thread has ended
[2025-06-05 09:56:24] 2025-06-05 07:43:42,252 | INFO     | all workflow threads have been joined
[2025-06-05 09:56:24] 2025-06-05 07:43:42,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 09:56:24] 2025-06-05 07:43:42,253 | INFO     | traces error code: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:42,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 09:56:24] 2025-06-05 07:43:42,622 [wrapper] ==== pilot stdout END ====
[2025-06-05 09:56:24] 2025-06-05 07:43:42,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 09:56:24] 2025-06-05 07:43:42,855 [wrapper] pilotpid: 4253
[2025-06-05 09:56:24] 2025-06-05 07:43:42,984 [wrapper] Pilot exit status: 0
[2025-06-05 09:56:24] 2025-06-05 07:43:43,532 [wrapper] pandaids: 6667280471
[2025-06-05 09:56:24] 2025-06-05 07:43:44,313 [wrapper] cleanup supervisor_pilot 24479 4254
[2025-06-05 09:56:24] 2025-06-05 07:43:44,372 [wrapper] Test setup, not cleaning
[2025-06-05 09:56:24] 2025-06-05 07:43:44,434 [wrapper] apfmon messages muted
[2025-06-05 09:56:24] 2025-06-05 07:43:44,524 [wrapper] ==== wrapper stdout END ====
[2025-06-05 09:56:24] 2025-06-05 07:43:44,612 [wrapper] ==== wrapper stderr END ====
[2025-06-05 09:56:24]  *** Error codes and diagnostics ***
[2025-06-05 09:56:24]     "exeErrorCode": 0,
[2025-06-05 09:56:24]     "exeErrorDiag": "",
[2025-06-05 09:56:24]     "pilotErrorCode": 0,
[2025-06-05 09:56:24]     "pilotErrorDiag": "",
[2025-06-05 09:56:24]  *** Listing of results directory ***
[2025-06-05 09:56:24] total 425360
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc    495897 May 27 17:39 pilot3.tar.gz
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc      5111 May 27 18:16 queuedata.json
[2025-06-05 09:56:24] -rwx------. 1 boinc boinc     37140 May 27 18:16 runpilot2-wrapper.sh
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc       100 Jun  5 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 09:56:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 04:03 run_atlas
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc       105 Jun  5 04:03 job.xml
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc 227139419 Jun  5 04:03 EVNT.44871834._002756.pool.root.1
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc    508877 Jun  5 04:03 input.tar.gz
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc      6390 Jun  5 04:03 init_data.xml
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc     15093 Jun  5 04:03 start_atlas.sh
[2025-06-05 09:56:24] drwxrwx--x. 2 boinc boinc        68 Jun  5 04:03 shared
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc         0 Jun  5 04:03 boinc_lockfile
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc      2559 Jun  5 04:03 pandaJob.out
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc    987109 Jun  5 04:06 agis_schedconf.cvmfs.json
[2025-06-05 09:56:24] drwx------. 4 boinc boinc      4096 Jun  5 04:06 pilot3
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc 200333108 Jun  5 09:40 HITS.44871837._070112.pool.root.1
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc       531 Jun  5 09:40 boinc_task_state.xml
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc      1018 Jun  5 09:41 memory_monitor_summary.json
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc   1598969 Jun  5 09:42 agis_ddmendpoints.agis.ALL.json
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc    427879 Jun  5 09:42 log.44871837._070112.job.log.tgz.1
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc        95 Jun  5 09:43 pilot_heartbeat.json
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc      7691 Jun  5 09:43 heartbeat.json
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc      4539 Jun  5 09:43 pilotlog.txt
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc   1710335 Jun  5 09:43 log.44871837._070112.job.log.1
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc       357 Jun  5 09:43 output.list
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc       620 Jun  5 09:43 runtime_log
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc   2160640 Jun  5 09:43 result.tar.gz
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc      8659 Jun  5 09:43 runtime_log.err
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc       658 Jun  5 09:43 lgzLDmQ9Be7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrrZKDmVe6VRm.diag
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc      8192 Jun  5 09:56 boinc_mmap_file
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc        28 Jun  5 09:56 wrapper_checkpoint.txt
[2025-06-05 09:56:24] -rw-r--r--. 1 boinc boinc     20516 Jun  5 09:56 stderr.txt
[2025-06-05 09:56:24] HITS file was successfully produced:
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc 200333108 Jun  5 09:40 shared/HITS.pool.root.1
[2025-06-05 09:56:24]  *** Contents of shared directory: ***
[2025-06-05 09:56:24] total 420084
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc 227139419 Jun  5 04:03 ATLAS.root_0
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc    508877 Jun  5 04:03 input.tar.gz
[2025-06-05 09:56:24] -rw-r--r--. 2 boinc boinc     15093 Jun  5 04:03 start_atlas.sh
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc 200333108 Jun  5 09:40 HITS.pool.root.1
[2025-06-05 09:56:24] -rw-------. 1 boinc boinc   2160640 Jun  5 09:43 result.tar.gz
09:56:26 (30636): run_atlas exited; CPU time 74193.261040
09:56:26 (30636): called boinc_finish(0)

</stderr_txt>
]]>

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