Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:41:21 (3795513): wrapper (7.7.26015): starting
02:41:21 (3795513): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 02:41:21] Arguments: --nthreads 4
[2025-06-05 02:41:21] Threads: 4
[2025-06-05 02:41:21] Checking for CVMFS
[2025-06-05 02:41:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:41:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:41:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:41:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:41:21] 2.9.2.0 2600721 3137 94472 146799 3 56 32418092 36864000 0 130560 0 3196167 99.993 758803 32293 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-05 02:41:21] CVMFS is ok
[2025-06-05 02:41:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 02:41:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 02:41:21] Further information can be found at the LHC@home message board.
[2025-06-05 02:41:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:41:21] Checking for apptainer binary...
[2025-06-05 02:41:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:41:21] Running /usr/bin/apptainer --version
[2025-06-05 02:41:21] apptainer version 1.3.6-6.1
[2025-06-05 02:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:41:21] thA314a
[2025-06-05 02:41:21] apptainer works
[2025-06-05 02:41:21] Set ATHENA_PROC_NUMBER=4
[2025-06-05 02:41:21] Set ATHENA_CORE_NUMBER=4
[2025-06-05 02:41:21] Starting ATLAS job with PandaID=6668231837
[2025-06-05 02:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:12:52]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:12:52]  workdir=None
[2025-06-05 04:12:52] ]
[2025-06-05 04:12:52] 2025-06-05 02:12:28,548 | INFO     | transferring file log.44871837._081016.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6668231837/log.44871837._081016.job.log.tgz.1 to /local/data/boinc/
[2025-06-05 04:12:52] 2025-06-05 02:12:28,548 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6668231837/log.44871837._081016.job.log.tgz.1 /local/data/boinc/slots/0/log.44871837._0810
[2025-06-05 04:12:52] 2025-06-05 02:12:28,567 | INFO     | adding to output.list: log.44871837._081016.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/e9/log.44871837._081016.job.log.tg
[2025-06-05 04:12:52] 2025-06-05 02:12:28,567 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 04:12:52] 2025-06-05 02:12:28,567 | INFO     | summary of transferred files:
[2025-06-05 04:12:52] 2025-06-05 02:12:28,567 | INFO     |  -- lfn=log.44871837._081016.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 04:12:52] 2025-06-05 02:12:28,567 | INFO     | stage-out finished correctly
[2025-06-05 04:12:52] 2025-06-05 02:12:28,607 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 04:12:52] 2025-06-05 02:12:30,254 | INFO     | job 6668231837 has state=finished
[2025-06-05 04:12:52] 2025-06-05 02:12:30,254 | INFO     | preparing for final server update for job 6668231837 in state='finished'
[2025-06-05 04:12:52] 2025-06-05 02:12:30,789 | WARNING  | process 3805834 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 04:12:52] 2025-06-05 02:12:30,789 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6668231837/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,789 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6668231837/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,790 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2399589 B
[2025-06-05 04:12:52] 2025-06-05 02:12:30,790 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15797 B
[2025-06-05 04:12:52] 2025-06-05 02:12:30,790 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | sufficient remaining disk space (223707398144 B)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6668231837: 2727470 B (within 2537553920 B limit)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6668231837/HITS.44871837._081016.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | total size of present files: 0 B (workdir size: 2727470 B)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,804 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6668231837/HITS.44871837._081016.pool.root.1 since it does not exist
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | this job has now completed (state=finished)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | log transfer has been attempted: DONE
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | job 6668231837 has finished - writing final server update
[2025-06-05 04:12:52] 2025-06-05 02:12:30,827 | INFO     | total number of processed events: 400 (read)
[2025-06-05 04:12:52] 2025-06-05 02:12:30,828 | INFO     | executing command: lscpu
[2025-06-05 04:12:52] 2025-06-05 02:12:30,847 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 04:12:52] 2025-06-05 02:12:30,874 | INFO     | number of running child processes to parent process 3805834: 1
[2025-06-05 04:12:52] 2025-06-05 02:12:30,874 | INFO     | maximum number of monitored processes: 6
[2025-06-05 04:12:52] 2025-06-05 02:12:33,351 | INFO     | PID=3799213 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 04:12:52] 2025-06-05 02:12:33,376 | INFO     | monitor loop #419: job 0:6668231837 is in state 'finished'
[2025-06-05 04:12:52] 2025-06-05 02:12:33,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,065 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 04:12:52] 2025-06-05 02:12:34,065 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6668231837/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,066 | INFO     | extracted standard info from prmon json
[2025-06-05 04:12:52] 2025-06-05 02:12:34,066 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 04:12:52] 2025-06-05 02:12:34,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 04:12:52] 2025-06-05 02:12:34,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 04:12:52] 2025-06-05 02:12:34,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | fitting pss+swap vs Time
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | sum of square deviations: 177275882.0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | sum of deviations: -18201805798.999996
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | mean x: 1749086918.0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | mean y: 2533973.265060241
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | -- intersect: 179590078809.2142
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | intersect: 179590078809.2142
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | chi2: 0.1623286224811789
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | -- intersect: 179590078809.2142
[2025-06-05 04:12:52] 2025-06-05 02:12:34,067 | INFO     | current memory leak: -102.68 B/s (using 83 data points, chi2=0.16)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | ..............................
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . Timing measurements:
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . get job = 0 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . initial setup = 1 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . payload setup = 4 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . stage-in = 0 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . payload execution = 5436 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . stage-out = 0 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | . log creation = 0 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,068 | INFO     | ..............................
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | 
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | job summary report
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | --------------------------------------------------
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | PanDA job id: 6668231837
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | task id: 44871837
[2025-06-05 04:12:52] 2025-06-05 02:12:34,107 | INFO     | errors: (none)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | pilot state: finished 
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | transexitcode: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | exeerrorcode: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | exeerrordiag: 
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | exitcode: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | exitmsg: OK
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | cpuconsumptiontime: 20773 s
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | nevents: 400
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | neventsw: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | pid: 3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | pgrp: 3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | corecount: 4
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | event service: False
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | sizes: {0: 2397394, 3: 2397600, 10: 2397628, 5444: 2424180, 5445: 2433183, 5451: 2433325}
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | --------------------------------------------------
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | 
[2025-06-05 04:12:52] 2025-06-05 02:12:34,108 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | job 6668231837 has completed (purged errors)
[2025-06-05 04:12:52] 2025-06-05 02:12:34,127 | INFO     | overall cleanup function is called
[2025-06-05 04:12:52] 2025-06-05 02:12:35,134 | INFO     | --- collectZombieJob: --- 10, [3805834]
[2025-06-05 04:12:52] 2025-06-05 02:12:35,134 | INFO     | zombie collector waiting for pid 3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:35,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:12:52] 2025-06-05 02:12:35,134 | INFO     | collected zombie processes
[2025-06-05 04:12:52] 2025-06-05 02:12:35,134 | INFO     | will attempt to kill all subprocesses of pid=3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:35,185 | INFO     | process IDs to be killed: [3805834] (in reverse order)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,219 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:12:52] 2025-06-05 02:12:35,221 | INFO     | did not find any defunct processes belonging to 3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:35,223 | INFO     | did not find any defunct processes belonging to 3805834
[2025-06-05 04:12:52] 2025-06-05 02:12:35,223 | INFO     | ready for new job
[2025-06-05 04:12:52] 2025-06-05 02:12:35,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | **************************************
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | **************************************
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | 
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | architecture information:
[2025-06-05 04:12:52] 2025-06-05 02:12:35,224 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:12:52] 2025-06-05 02:12:35,237 | INFO     | cat /etc/os-release:
[2025-06-05 04:12:52] NAME="CentOS Linux"
[2025-06-05 04:12:52] VERSION="7 (Core)"
[2025-06-05 04:12:52] ID="centos"
[2025-06-05 04:12:52] ID_LIKE="rhel fedora"
[2025-06-05 04:12:52] VERSION_ID="7"
[2025-06-05 04:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:12:52] ANSI_COLOR="0;31"
[2025-06-05 04:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:12:52] HOME_URL="https://www.centos.org/"
[2025-06-05 04:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:12:52] 
[2025-06-05 04:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:12:52] 
[2025-06-05 04:12:52] 2025-06-05 02:12:35,238 | INFO     | **************************************
[2025-06-05 04:12:52] 2025-06-05 02:12:35,741 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | INFO     | sufficient remaining disk space (223710543872 B)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | INFO     | update_server=False
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,759 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:12:52] 2025-06-05 02:12:35,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:12:52] 2025-06-05 02:12:35,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:12:52] 2025-06-05 02:12:35,880 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 04:12:52] 2025-06-05 02:12:35,881 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 04:12:52] 2025-06-05 02:12:35,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:12:52] 2025-06-05 02:12:35,881 | INFO     | will abort loop
[2025-06-05 04:12:52] 2025-06-05 02:12:35,918 | INFO     | all data control threads have been joined
[2025-06-05 04:12:52] 2025-06-05 02:12:36,297 | INFO     | all job control threads have been joined
[2025-06-05 04:12:52] 2025-06-05 02:12:36,436 | INFO     | all payload control threads have been joined
[2025-06-05 04:12:52] 2025-06-05 02:12:36,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:12:52] 2025-06-05 02:12:36,764 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:36,764 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:36,886 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:36,924 | INFO     | [data] control thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,014 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,303 | INFO     | [job] control thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,442 | INFO     | [payload] control thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,540 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,670 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:37,953 | INFO     | [job] validate thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:38,059 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:38,146 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:38,245 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:38,625 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:39,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:12:52] 2025-06-05 02:12:43,163 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:45,914 | INFO     | job.realtimelogging is not enabled
[2025-06-05 04:12:52] 2025-06-05 02:12:46,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:12:52] 2025-06-05 02:12:47,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920650159936)>', '<ExcThread(monitor, started 139920144320256)>']
[2025-06-05 04:12:52] 2025-06-05 02:12:47,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:12:52] 2025-06-05 02:12:47,824 | INFO     | [monitor] control thread has ended
[2025-06-05 04:12:52] 2025-06-05 02:12:52,446 | INFO     | all workflow threads have been joined
[2025-06-05 04:12:52] 2025-06-05 02:12:52,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:12:52] 2025-06-05 02:12:52,447 | INFO     | traces error code: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:52,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:12:52] 2025-06-05 02:12:52,518 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:12:52] 2025-06-05 02:12:52,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:12:52] 2025-06-05 02:12:52,526 [wrapper] pilotpid: 3799213
[2025-06-05 04:12:52] 2025-06-05 02:12:52,529 [wrapper] Pilot exit status: 0
[2025-06-05 04:12:52] 2025-06-05 02:12:52,540 [wrapper] pandaids: 6668231837
[2025-06-05 04:12:52] 2025-06-05 02:12:52,565 [wrapper] cleanup supervisor_pilot 3818216 3799214
[2025-06-05 04:12:52] 2025-06-05 02:12:52,568 [wrapper] Test setup, not cleaning
[2025-06-05 04:12:52] 2025-06-05 02:12:52,572 [wrapper] apfmon messages muted
[2025-06-05 04:12:52] 2025-06-05 02:12:52,575 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:12:52] 2025-06-05 02:12:52,579 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:12:52]  *** Error codes and diagnostics ***
[2025-06-05 04:12:52]     "exeErrorCode": 0,
[2025-06-05 04:12:52]     "exeErrorDiag": "",
[2025-06-05 04:12:52]     "pilotErrorCode": 0,
[2025-06-05 04:12:52]     "pilotErrorDiag": "",
[2025-06-05 04:12:52]  *** Listing of results directory ***
[2025-06-05 04:12:52] total 412700
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc    495897 May 28 10:01 pilot3.tar.gz
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc      5111 May 28 10:03 queuedata.json
[2025-06-05 04:12:52] -rwx------ 1 boinc boinc     37140 May 28 10:05 runpilot2-wrapper.sh
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc       100 Jun  5 02:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:12:52] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 02:41 run_atlas
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc       105 Jun  5 02:41 job.xml
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc 223186664 Jun  5 02:41 EVNT.44871834._003163.pool.root.1
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc      6854 Jun  5 02:41 init_data.xml
[2025-06-05 04:12:52] drwxrwx--x 2 boinc boinc      4096 Jun  5 02:41 shared
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc    508877 Jun  5 02:41 input.tar.gz
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc     15093 Jun  5 02:41 start_atlas.sh
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc         0 Jun  5 02:41 boinc_lockfile
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc      2558 Jun  5 02:41 pandaJob.out
[2025-06-05 04:12:52] -rw------- 1 boinc boinc    987117 Jun  5 02:41 agis_schedconf.cvmfs.json
[2025-06-05 04:12:52] -rw------- 1 boinc boinc   1598969 Jun  5 02:41 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:12:52] drwx------ 4 boinc boinc      4096 Jun  5 02:41 pilot3
[2025-06-05 04:12:52] -rw------- 1 boinc boinc        95 Jun  5 04:11 pilot_heartbeat.json
[2025-06-05 04:12:52] -rw------- 1 boinc boinc 194028103 Jun  5 04:12 HITS.44871837._081016.pool.root.1
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc       529 Jun  5 04:12 boinc_task_state.xml
[2025-06-05 04:12:52] -rw------- 1 boinc boinc      1024 Jun  5 04:12 memory_monitor_summary.json
[2025-06-05 04:12:52] -rw------- 1 boinc boinc    251801 Jun  5 04:12 log.44871837._081016.job.log.tgz.1
[2025-06-05 04:12:52] -rw------- 1 boinc boinc      7666 Jun  5 04:12 heartbeat.json
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc      8192 Jun  5 04:12 boinc_mmap_file
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc        27 Jun  5 04:12 wrapper_checkpoint.txt
[2025-06-05 04:12:52] -rw------- 1 boinc boinc      4738 Jun  5 04:12 pilotlog.txt
[2025-06-05 04:12:52] -rw------- 1 boinc boinc    526691 Jun  5 04:12 log.44871837._081016.job.log.1
[2025-06-05 04:12:52] -rw------- 1 boinc boinc       357 Jun  5 04:12 output.list
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc       620 Jun  5 04:12 runtime_log
[2025-06-05 04:12:52] -rw------- 1 boinc boinc    798720 Jun  5 04:12 result.tar.gz
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc      8738 Jun  5 04:12 runtime_log.err
[2025-06-05 04:12:52] -rw------- 1 boinc boinc       659 Jun  5 04:12 6KrNDmyxQe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNbbKDmn3UR6n.diag
[2025-06-05 04:12:52] -rw-r--r-- 1 boinc boinc     22551 Jun  5 04:12 stderr.txt
[2025-06-05 04:12:52] HITS file was successfully produced:
[2025-06-05 04:12:52] -rw------- 1 boinc boinc 194028103 Jun  5 04:12 shared/HITS.pool.root.1
[2025-06-05 04:12:52]  *** Contents of shared directory: ***
[2025-06-05 04:12:52] total 408744
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc 223186664 Jun  5 02:41 ATLAS.root_0
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc    508877 Jun  5 02:41 input.tar.gz
[2025-06-05 04:12:52] -rw-r--r-- 2 boinc boinc     15093 Jun  5 02:41 start_atlas.sh
[2025-06-05 04:12:52] -rw------- 1 boinc boinc 194028103 Jun  5 04:12 HITS.pool.root.1
[2025-06-05 04:12:52] -rw------- 1 boinc boinc    798720 Jun  5 04:12 result.tar.gz
04:12:54 (3795513): run_atlas exited; CPU time 20790.490303
04:12:54 (3795513): called boinc_finish(0)

</stderr_txt>
]]>

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